Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 2.0e-96 355.9 198 100.0
Sopen01g009470 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-25 119.0 72 81.9
Sopen01g031800 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-25 119.0 72 81.9
Sopen05g030490 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-25 119.0 72 81.9
Sopen09g011150 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-25 119.0 72 81.9
Sopen09g015540 Solanum pennellii HOM05D000002 ORTHO05D000001 4.1e-25 119.0 72 81.9
Sopen08g007360 Solanum pennellii HOM05D000002 ORTHO05D000001 9.1e-25 117.9 72 80.6
Sopen07g017640 Solanum pennellii HOM05D000002 ORTHO05D000001 7.7e-24 114.8 72 77.8
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 1.7e-23 113.6 63 90.5
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 1.7e-23 113.6 63 90.5
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 2.9e-23 112.8 63 90.5
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.9e-23 112.8 62 91.9
Sopen03g023860 Solanum pennellii HOM05D000002 ORTHO05D000001 5.0e-23 112.1 72 77.8
Sopen03g020200 Solanum pennellii HOM05D000002 ORTHO05D000001 1.5e-22 110.5 72 76.4
Sopen10g015690 Solanum pennellii HOM05D000002 ORTHO05D000001 2.5e-22 109.8 72 76.4
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 1.2e-21 107.5 62 87.1
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 6.1e-21 105.1 63 84.1
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 2.0e-19 100.1 63 81.0
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 2.6e-19 99.8 63 79.4
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 3.7e-18 95.9 63 73.0
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 3.1e-17 92.8 76 64.5
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 7.0e-17 91.7 63 73.0
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 1.2e-16 90.9 63 76.2
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.6e-16 90.5 63 71.4
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-16 90.5 63 71.4
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 2.7e-16 89.7 56 80.4
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 4.5e-16 89.0 63 71.4
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 4.5e-16 89.0 63 73.0
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 5.9e-16 88.6 63 71.4
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.0e-15 87.8 63 71.4
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 2.2e-15 86.7 62 71.0
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 2.2e-15 86.7 63 69.8
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 2.9e-15 86.3 63 69.8
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 2.9e-15 86.3 63 71.4
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.9e-15 86.3 63 71.4
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.9e-15 86.3 63 71.4
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 2.9e-15 86.3 63 63.5
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 5.0e-15 85.5 63 66.7
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 6.5e-15 85.1 56 75.0
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 6.5e-15 85.1 56 75.0
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 6.5e-15 85.1 63 61.9
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 6.5e-15 85.1 63 63.5
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.5e-15 84.7 56 73.2
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 8.5e-15 84.7 56 73.2
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 8.5e-15 84.7 56 75.0
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 1.1e-14 84.3 55 74.5
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.1e-14 84.3 76 61.8
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 1.5e-14 84.0 63 63.5
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.5e-14 84.0 63 61.9
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 1.5e-14 84.0 63 65.1
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 1.9e-14 83.6 63 66.7
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 3.2e-14 82.8 63 66.7
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 3.2e-14 82.8 56 73.2
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 3.2e-14 82.8 56 73.2
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 3.2e-14 82.8 63 60.3
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 4.2e-14 82.4 63 63.5
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 4.2e-14 82.4 63 63.5
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 4.2e-14 82.4 63 68.3
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 4.2e-14 82.4 63 65.1
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 5.5e-14 82.0 63 65.1
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 9.4e-14 81.3 63 66.7
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 9.4e-14 81.3 76 55.3
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 9.4e-14 81.3 56 71.4
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 1.2e-13 80.9 76 55.3
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 1.2e-13 80.9 63 65.1
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-13 80.5 63 66.7
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.6e-13 80.5 63 60.3
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 2.1e-13 80.1 62 61.3
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 2.1e-13 80.1 63 61.9
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 3.6e-13 79.3 54 68.5
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 3.6e-13 79.3 58 69.0
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 4.7e-13 79.0 76 55.3
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 6.1e-13 78.6 62 64.5
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 8.0e-13 78.2 63 58.7
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 8.0e-13 78.2 63 61.9
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 8.0e-13 78.2 62 64.5
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 8.0e-13 78.2 62 64.5
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 8.0e-13 78.2 52 73.1
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 8.0e-13 78.2 83 51.8
Sopen01g049130 Solanum pennellii HOM05D006380 ORTHO05D008400 8.0e-13 78.2 47 80.9
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 1.0e-12 77.8 52 71.2
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.0e-12 77.8 76 55.3
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.4e-12 77.4 72 55.6
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 1.4e-12 77.4 71 57.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.4e-12 77.4 65 61.5
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 1.4e-12 77.4 63 61.9
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 1.8e-12 77.0 58 67.2
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 2.3e-12 76.6 63 60.3
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 2.3e-12 76.6 52 71.2
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 2.3e-12 76.6 63 58.7
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 3.0e-12 76.3 52 69.2
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 3.0e-12 76.3 53 73.6
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 4.0e-12 75.9 54 66.7
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 4.0e-12 75.9 63 60.3
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 4.0e-12 75.9 63 60.3
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 4.0e-12 75.9 63 60.3
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 4.0e-12 75.9 63 57.1
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 5.2e-12 75.5 63 57.1
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.2e-12 75.5 65 60.0
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 5.2e-12 75.5 51 70.6
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.8e-12 75.1 63 57.1
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 6.8e-12 75.1 63 58.7
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 55.6
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 8.8e-12 74.7 63 58.7
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 8.8e-12 74.7 52 65.4
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 61.9
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 55.6
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 57.1
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 1.2e-11 74.3 63 58.7
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.2e-11 74.3 52 69.2
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 1.5e-11 73.9 52 67.3
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 3.4e-11 72.8 53 67.9
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 4.4e-11 72.4 63 54.0
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 4.4e-11 72.4 65 56.9
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 9.8e-11 71.2 63 55.6
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.3e-10 70.9 64 54.7
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 1.7e-10 70.5 63 57.1
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 2.8e-10 69.7 50 70.0
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 8.3e-10 68.2 63 57.1
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.4e-09 67.4 56 58.9
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.8e-09 67.0 85 49.4
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 3.1e-09 66.2 50 66.0
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.6e-08 63.9 59 59.3
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 2.0e-08 63.5 74 48.6
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 7.7e-08 61.6 65 52.3
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.3e-07 60.8 50 60.0
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 3.8e-07 59.3 76 44.7
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.0e-07 58.9 53 50.9
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 5.0e-07 58.9 63 50.8
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 5.0e-07 58.9 63 50.8
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 6.6e-07 58.5 50 56.0


User provided reference genes

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