Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 2.1e-266 921.8 461 100.0
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 3.6e-250 867.8 460 93.0
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 5.6e-243 844.0 460 91.1
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 8.9e-241 836.6 442 92.8
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 1.4e-222 776.2 460 84.8
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.7e-215 752.7 460 79.6
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 8.4e-215 750.4 451 80.7
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 3.2e-214 748.4 458 80.6
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 9.6e-211 736.9 458 79.0
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 1.4e-209 733.0 453 79.2
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 2.4e-209 732.3 454 79.3
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.1e-209 731.5 447 80.1
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 9.0e-209 730.3 445 80.0
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 1.2e-208 729.9 455 77.6
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 7.6e-208 727.2 446 78.9
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 1.0e-207 726.9 445 78.9
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.1e-205 719.2 453 79.5
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 4.6e-205 718.0 445 78.7
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.0e-204 716.8 444 79.3
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 2.3e-204 715.7 447 77.9
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 3.0e-204 715.3 452 77.2
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.9e-204 714.9 447 78.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.9e-204 714.9 447 78.1
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 5.1e-204 714.5 458 77.9
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 5.1e-204 714.5 447 78.1
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 6.7e-204 714.1 444 79.3
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-203 713.4 447 78.3
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 3.3e-203 711.8 442 77.6
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 7.4e-203 710.7 445 78.2
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 7.4e-203 710.7 448 77.7
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 1.6e-202 709.5 458 76.9
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 8.2e-202 707.2 445 78.7
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.8e-201 706.1 450 77.1
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.8e-201 706.1 449 77.1
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 1.8e-201 706.1 459 75.8
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 2.4e-201 705.7 452 76.8
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 3.1e-201 705.3 448 77.5
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 3.1e-201 705.3 449 76.8
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-200 703.0 449 76.6
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.4e-200 701.8 443 76.3
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 3.4e-200 701.8 460 76.3
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.3e-199 699.9 447 75.8
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 5.0e-199 698.0 454 75.1
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 6.5e-199 697.6 460 76.1
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 8.5e-199 697.2 443 76.1
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 2.5e-198 695.7 445 76.4
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-198 695.7 442 76.9
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-198 695.7 442 76.9
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 4.2e-198 694.9 458 75.3
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 9.4e-198 693.7 442 77.4
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 9.4e-198 693.7 422 78.7
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.1e-197 692.6 445 76.6
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.1e-197 692.6 440 76.1
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 3.6e-197 691.8 445 77.1
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 3.6e-197 691.8 447 75.6
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 4.6e-197 691.4 422 79.4
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 4.6e-197 691.4 450 75.1
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 7.9e-197 690.6 442 77.1
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 7.9e-197 690.6 442 77.1
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 7.9e-197 690.6 460 75.2
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 1.8e-196 689.5 442 76.9
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 3.9e-196 688.3 442 76.9
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 5.1e-196 688.0 435 78.2
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 5.1e-196 688.0 447 76.7
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 5.1e-196 688.0 442 76.9
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 5.1e-196 688.0 437 78.0
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 5.1e-196 688.0 460 73.0
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 1.1e-195 686.8 452 76.1
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 3.3e-195 685.3 446 73.8
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.3e-195 685.3 447 76.3
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 7.4e-195 684.1 445 74.4
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 9.7e-195 683.7 461 73.3
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 9.7e-195 683.7 447 74.7
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 1.7e-194 682.9 436 77.3
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.7e-194 682.9 445 76.4
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 2.8e-194 682.2 460 72.4
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 1.1e-193 680.2 446 76.5
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.4e-193 679.9 442 76.5
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.8e-193 679.5 453 73.7
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 2.4e-193 679.1 424 77.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 5.3e-193 677.9 565 62.7
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 4.5e-192 674.9 441 75.1
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 4.5e-192 674.9 454 75.1
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 5.9e-192 674.5 447 73.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 5.9e-192 674.5 453 73.3
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 1.3e-191 673.3 441 74.8
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-191 672.2 439 75.4
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 9.4e-190 667.2 449 73.3
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 2.1e-189 666.0 472 71.2
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 1.0e-188 663.7 470 70.6
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 1.8e-188 662.9 459 73.4
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-188 662.5 448 73.7
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 5.1e-188 661.4 449 71.9
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.0e-187 659.4 447 73.8
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 3.3e-187 658.7 459 73.0
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 3.7e-186 655.2 472 71.2
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.4e-185 653.3 459 71.2
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 1.8e-185 652.9 447 72.7
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 2.4e-185 652.5 456 71.5
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 2.0e-184 649.4 437 73.9
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.0e-184 649.4 374 86.9
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 2.6e-184 649.0 460 71.7
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 3.5e-184 648.7 485 67.0
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 5.9e-184 647.9 447 71.4
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 2.2e-183 646.0 459 71.5
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 6.5e-183 644.4 459 71.5
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 1.1e-182 643.7 455 70.3
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 1.1e-182 643.7 459 70.8
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.5e-182 642.5 453 73.5
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 1.0e-180 637.1 437 71.2
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 1.4e-180 636.7 459 70.8
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 6.7e-180 634.4 437 70.9
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.7e-175 619.8 446 69.7
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 1.7e-175 619.8 429 69.7
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 1.1e-174 617.1 389 76.3
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 2.6e-171 605.9 467 66.2
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.8e-169 599.7 447 67.3
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 2.2e-167 592.8 421 68.2
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 3.2e-166 589.0 451 66.1
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 4.7e-165 585.1 412 69.2
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 2.4e-161 572.8 458 66.4
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 1.4e-156 557.0 418 65.8
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 3.6e-149 532.3 364 72.3
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 8.9e-148 527.7 400 68.0
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 7.8e-144 514.6 433 59.6
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 3.0e-143 512.7 362 68.5
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 4.7e-141 505.4 438 59.1
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.0e-140 502.3 351 69.8
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.3e-138 497.3 422 60.4
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 4.9e-138 495.4 443 57.6
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 5.6e-134 481.9 422 58.3
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.1e-125 453.4 323 69.3
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 4.7e-125 452.2 394 59.4
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 6.9e-124 448.4 338 70.1
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 2.1e-104 383.6 302 62.9
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 3.2e-97 359.8 257 70.0
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 5.9e-91 339.0 207 78.7
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 1.0e-87 328.2 211 75.8
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 9.1e-84 315.1 256 64.1
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 9.4e-81 305.1 438 42.2
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 1.3e-77 294.7 197 72.6
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 3.3e-70 270.0 180 73.3
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 6.8e-55 219.2 154 71.4
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 7.0e-52 209.1 138 73.9
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 3.4e-38 163.7 212 44.3
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 3.5e-35 153.7 150 52.7
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 5.6e-33 146.4 149 53.7
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 2.6e-22 110.9 61 86.9
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 6.0e-11 73.2 56 64.3
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 5.8e-06 56.6 95 38.9


User provided reference genes

Program Settings