Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G908.7 Capsicum annuum HOM05D009522 ORTHO05D009846 7.0e-208 727.2 420 100.0
Sopen08g022670 Solanum pennellii HOM05D009522 ORTHO05D009846 9.9e-138 494.2 430 73.3
PGSC0003DMG400029579 Solanum tuberosum HOM05D009522 ORTHO05D009846 6.0e-135 485.0 432 73.6
Solyc08g069020.1 Solanum lycopersicum HOM05D009522 ORTHO05D009846 1.5e-122 443.7 430 67.9
Peaxi162Scf00288g00084 Petunia axillaris HOM05D009522 ORTHO05D009846 2.0e-101 373.6 425 60.5
Nitab4.5_0002023g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.9e-89 333.2 436 56.9
Nitab4.5_0000502g0110 Nicotiana tabacum HOM05D009522 ORTHO05D009846 5.7e-85 318.9 427 55.5
Solyc12g096400.2 Solanum lycopersicum HOM05D009522 ORTHO05D009846 9.2e-51 205.3 488 42.6
PGSC0003DMG400029280 Solanum tuberosum HOM05D009522 ORTHO05D009846 4.6e-50 203.0 487 41.7
Nitab4.5_0010092g0020 Nicotiana tabacum HOM05D009522 ORTHO05D009846 1.7e-49 201.1 494 42.1
Nitab4.5_0001159g0190 Nicotiana tabacum HOM05D009522 ORTHO05D009846 2.0e-45 187.6 498 40.2
CAN.G566.64 Capsicum annuum HOM05D009522 ORTHO05D009846 2.1e-39 167.5 491 40.1
Peaxi162Scf00459g00082 Petunia axillaris HOM05D009522 ORTHO05D009846 2.0e-37 161.0 506 37.5
Sopen12g032250 Solanum pennellii HOM05D009522 ORTHO05D009846 3.2e-35 153.7 488 37.3
Oeu018569.1 Olea europaea HOM05D009522 ORTHO05D009846 3.8e-28 130.2 428 37.6
Nitab4.5_0004131g0040 Nicotiana tabacum HOM05D017514 ORTHO05D009846 2.4e-27 127.5 343 37.0
Nitab4.5_0000555g0230 Nicotiana tabacum HOM05D017514 ORTHO05D009846 7.1e-27 125.9 344 37.8
Cc00_g05330 Coffea canephora HOM05D009522 ORTHO05D009846 9.9e-21 105.5 450 34.0
Rhsim07G0169800 Rhododendron simsii HOM05D033576 ORTHO05D009846 6.0e-18 96.3 451 32.4
PGR031G3799 Punica granatum HOM05D009522 ORTHO05D009846 2.0e-13 81.3 442 30.8
SGA_v2.0_scaffold27G11671 Striga asiatica HOM05D009522 ORTHO05D009846 2.9e-12 77.4 429 30.1
CAN.G426.21 Capsicum annuum HOM05D002375 ORTHO05D002457 1.9e-11 74.7 53 81.1
MD09G1061400 Malus domestica HOM05D003021 ORTHO05D002235 6.0e-10 69.7 51 74.5
TWI34G1417 Tripterygium wilfordii HOM05D014278 ORTHO05D009846 7.9e-10 69.3 419 28.6
Prupe.3G258800 Prunus persica HOM05D003021 ORTHO05D002235 1.0e-09 68.9 51 72.5
TAR629G0828 Trochodendron aralioides HOM05D003021 ORTHO05D002235 1.0e-09 68.9 51 74.5
Duzib187G0754 Durio zibethinus HOM05D003021 ORTHO05D002235 1.8e-09 68.2 51 72.5
Duzib147G0806 Durio zibethinus HOM05D003021 ORTHO05D002235 2.3e-09 67.8 51 72.5
Gohir.D04G045100 Gossypium hirsutum HOM05D003021 ORTHO05D002235 2.3e-09 67.8 51 72.5
Gorai.012G050300 Gossypium raimondii HOM05D003021 ORTHO05D002235 2.3e-09 67.8 51 72.5
Lj1g0027444 Lotus japonicus HOM05D013197 ORTHO05D009846 3.9e-09 67.0 503 28.4
TAR371G0449 Trochodendron aralioides HOM05D003021 ORTHO05D002235 3.9e-09 67.0 50 72.0
MSTRG.25778 Avicennia marina HOM05D009522 ORTHO05D009846 5.1e-09 66.6 490 29.4
Sabra18G0011200 Salix brachista HOM05D014278 ORTHO05D009846 5.1e-09 66.6 446 28.7
Thecc.04G090900 Theobroma cacao HOM05D003021 ORTHO05D002235 5.1e-09 66.6 51 70.6
CiPaw.03G091400 Carya illinoinensis HOM05D003021 ORTHO05D002235 6.7e-09 66.2 65 61.5
Sabra18G0013600 Salix brachista HOM05D014278 ORTHO05D009846 6.7e-09 66.2 446 28.7
CSS0009655 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 8.7e-09 65.9 51 70.6
CANSAT64G0795 Cannabis sativa HOM05D003021 ORTHO05D002235 8.7e-09 65.9 51 68.6
Dinv11486 Davidia involucrata HOM05D003021 ORTHO05D002235 8.7e-09 65.9 60 65.0
MBI14_g19445_MAGBIO Magnolia biondii HOM05D021794 ORTHO05D009846 8.7e-09 65.9 433 29.8
Nn3g17378 Nelumbo nucifera HOM05D003021 ORTHO05D002235 8.7e-09 65.9 77 57.1
TWI60G1604 Tripterygium wilfordii HOM05D003021 ORTHO05D002235 1.1e-08 65.5 51 68.6
Aqoxy3G03562 Aquilegia oxysepala HOM05D003021 ORTHO05D002235 1.5e-08 65.1 51 68.6
Oeu000855.1 Olea europaea HOM05D003021 ORTHO05D002235 1.5e-08 65.1 49 71.4
Zm00001eb400410 Zea mays HOM05D003021 ORTHO05D002235 1.5e-08 65.1 53 69.8
Ciclev10011360m.g Citrus clementina HOM05D003021 ORTHO05D002235 1.9e-08 64.7 78 56.4
Haze_14471 Corylus avellana HOM05D003021 ORTHO05D002235 1.9e-08 64.7 51 72.5
MELO3C022022.2 Cucumis melo HOM05D003021 ORTHO05D002235 1.9e-08 64.7 63 63.5
RcHm_v2.0_Chr2g0166531 Rosa chinensis HOM05D003021 ORTHO05D002235 1.9e-08 64.7 96 50.0
arahy.Tifrunner.gnm1.ann1.JN5ZJX Arachis hypogaea HOM05D003021 ORTHO05D002235 2.5e-08 64.3 51 70.6
Dinv10680 Davidia involucrata HOM05D003021 ORTHO05D002235 3.3e-08 63.9 65 60.0
Potri.017G090200 Populus trichocarpa HOM05D003021 ORTHO05D002235 3.3e-08 63.9 51 68.6
Rhsim08G0073600 Rhododendron simsii HOM05D003021 ORTHO05D002235 3.3e-08 63.9 82 52.4
SalBow1G6367 Salvia bowleyana HOM05D003021 ORTHO05D002235 3.3e-08 63.9 51 68.6
AUR62018150 Chenopodium quinoa HOM05D003021 ORTHO05D002235 4.3e-08 63.5 62 61.3
ECA232G0555 Erigeron canadensis HOM05D003021 ORTHO05D002235 4.3e-08 63.5 70 54.3
HanXRQChr15g0488721 Helianthus annuus HOM05D003021 ORTHO05D002235 4.3e-08 63.5 66 57.6
Actinidia09241 Actinidia chinensis HOM05D003021 ORTHO05D002235 5.6e-08 63.2 51 64.7
MBI16_g15533_MAGBIO Magnolia biondii HOM05D003021 ORTHO05D002235 5.6e-08 63.2 51 68.6
Ah.10g031940 Amaranthus hybridus HOM05D003021 ORTHO05D002235 7.4e-08 62.8 65 56.9
HanXRQChr09g0264151 Helianthus annuus HOM05D003021 ORTHO05D002235 7.4e-08 62.8 51 66.7
Hma1.2p1_1813F.1_g303770 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 7.4e-08 62.8 50 74.0
Hma1.2p1_3044F.1_g332070 Hydrangea macrophylla HOM05D003021 ORTHO05D002235 7.4e-08 62.8 50 74.0
Sabra17G0079400 Salix brachista HOM05D003021 ORTHO05D002235 7.4e-08 62.8 51 66.7
MSTRG.23902 Avicennia marina HOM05D003021 ORTHO05D002235 9.6e-08 62.4 51 66.7
Dinv38770 Davidia involucrata HOM05D003021 ORTHO05D002235 9.6e-08 62.4 51 62.7
Lj2g0010760 Lotus japonicus HOM05D003021 ORTHO05D002235 9.6e-08 62.4 70 55.7
Lalb_Chr06g0175101 Lupinus albus HOM05D003021 ORTHO05D002235 9.6e-08 62.4 51 66.7
MD14G1207900 Malus domestica HOM05D003021 ORTHO05D002235 9.6e-08 62.4 89 51.7
MD15G1107800 Malus domestica HOM05D013263 ORTHO05D009846 9.6e-08 62.4 456 30.0
Manes.01G099000 Manihot esculenta HOM05D003021 ORTHO05D002235 9.6e-08 62.4 70 52.9
Oeu062145.1 Olea europaea HOM05D003021 ORTHO05D002235 9.6e-08 62.4 62 61.3
TPR.G26183 Trifolium pratense HOM05D003021 ORTHO05D002235 9.6e-08 62.4 51 66.7
Glyma.13G058900 Glycine max HOM05D003021 ORTHO05D002235 1.3e-07 62.0 51 68.6
Manes.16G135600 Manihot esculenta HOM05D014278 ORTHO05D009846 1.3e-07 62.0 445 26.5
TPR.G33474 Trifolium pratense HOM05D003021 ORTHO05D002235 1.3e-07 62.0 51 64.7
A02p41540 Brassica napus HOM05D009040 ORTHO05D002235 1.6e-07 61.6 51 64.7
AUR62042563 Chenopodium quinoa HOM05D003021 ORTHO05D002235 1.6e-07 61.6 69 58.0
Migut.H00652 Erythranthe guttata HOM05D003021 ORTHO05D002235 1.6e-07 61.6 51 66.7
Lj1g0014126 Lotus japonicus HOM05D003021 ORTHO05D002235 1.6e-07 61.6 51 68.6
PGSC0003DMG400001352 Solanum tuberosum HOM05D003021 ORTHO05D002235 1.6e-07 61.6 65 58.5
unitig_744.g24000 Utricularia gibba HOM05D003021 ORTHO05D002235 1.6e-07 61.6 51 66.7
CsaV3_1G005770 Cucumis sativus L. HOM05D003021 ORTHO05D002235 2.1e-07 61.2 51 66.7
Eucgr.B00563 Eucalyptus grandis HOM05D003021 ORTHO05D002235 2.1e-07 61.2 51 62.7
Os03g0211400 Oryza sativa ssp. japonica HOM05D003021 ORTHO05D002235 2.1e-07 61.2 53 66.0
PSO013G0053 Papaver somniferum HOM05D003021 ORTHO05D002235 2.1e-07 61.2 77 49.4
Potri.018G005500 Populus trichocarpa HOM05D014278 ORTHO05D009846 2.1e-07 61.2 470 29.4
THA.LOC104822343 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 2.1e-07 61.2 53 67.9
FAN13G0757 Fragaria x ananassa HOM05D003021 ORTHO05D002235 2.8e-07 60.8 106 40.6
Oeu040384.1 Olea europaea HOM05D009522 ORTHO05D009846 2.8e-07 60.8 323 33.4
Peaxi162Scf00166g00071 Petunia axillaris HOM05D003021 ORTHO05D002235 2.8e-07 60.8 49 67.3
PGR083G2506 Punica granatum HOM05D003021 ORTHO05D002235 2.8e-07 60.8 51 66.7
Solyc02g088580.1 Solanum lycopersicum HOM05D003021 ORTHO05D002235 2.8e-07 60.8 65 60.0
Sopen02g033310 Solanum pennellii HOM05D003021 ORTHO05D002235 2.8e-07 60.8 65 60.0
CAN.G206.199 Capsicum annuum HOM05D003021 ORTHO05D002235 3.7e-07 60.5 62 61.3
BcaB06g27294 Brassica carinata HOM05D003021 ORTHO05D002235 4.8e-07 60.1 51 70.6
C04p45710 Brassica napus HOM05D003021 ORTHO05D002235 4.8e-07 60.1 51 70.6
BolC4t26155H Brassica oleracea HOM05D003021 ORTHO05D002235 4.8e-07 60.1 51 70.6
Ciclev10010613m.g Citrus clementina HOM05D014278 ORTHO05D009846 4.8e-07 60.1 467 26.6
FAN08G3689 Fragaria x ananassa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 106 40.6
Lsat_1_v5_gn_4_170321 Lactuca sativa HOM05D003021 ORTHO05D002235 4.8e-07 60.1 70 52.9
Medtr4g109220 Medicago truncatula HOM05D014856 ORTHO05D002235 4.8e-07 60.1 47 68.1
PGR083G1105 Punica granatum HOM05D003021 ORTHO05D002235 4.8e-07 60.1 61 55.7
C02p61480 Brassica napus HOM05D009040 ORTHO05D002235 6.2e-07 59.7 85 47.1
BolC2t12199H Brassica oleracea HOM05D009040 ORTHO05D002235 6.2e-07 59.7 85 47.1
Cc07_g03910 Coffea canephora HOM05D003021 ORTHO05D002235 6.2e-07 59.7 71 50.7
Sopen03g034540 Solanum pennellii HOM05D003021 ORTHO05D022173 6.2e-07 59.7 49 63.3
HPP92_010149 Vanilla planifolia HOM05D040231 ORTHO05D002235 6.2e-07 59.7 49 63.3
Medtr7g012290 Medicago truncatula HOM05D003021 ORTHO05D002235 8.2e-07 59.3 76 51.3
Potri.006G274600 Populus trichocarpa HOM05D014278 ORTHO05D009846 8.2e-07 59.3 451 29.3
Potri.015G049600 Populus trichocarpa HOM05D003021 ORTHO05D002235 8.2e-07 59.3 81 50.6
VMungo0464G0637 Vigna mungo HOM05D003021 ORTHO05D002235 8.2e-07 59.3 36 86.1
BcaC06g32508 Brassica carinata HOM05D009040 ORTHO05D002235 1.1e-06 58.9 50 62.0
BcaC06g32509 Brassica carinata HOM05D009040 ORTHO05D002235 1.1e-06 58.9 50 62.0
Glyma.05G023500 Glycine max HOM05D014856 ORTHO05D002235 1.1e-06 58.9 47 68.1
Lj9P468T32 Lonicera japonica HOM05D003021 ORTHO05D002235 1.1e-06 58.9 120 41.7
MD06G1199300 Malus domestica HOM05D003021 ORTHO05D002235 1.1e-06 58.9 68 52.9
Nitab4.5_0008213g0010 Nicotiana tabacum HOM05D003021 ORTHO05D002235 1.1e-06 58.9 60 61.7
THA.LOC104802964 Tarenaya hassleriana HOM05D009950 ORTHO05D002235 1.1e-06 58.9 52 69.2
Aa31LG9G16610 Aethionema arabicum HOM05D003021 ORTHO05D002235 1.4e-06 58.5 71 54.9
MSTRG.15459 Avicennia marina HOM05D003021 ORTHO05D002235 1.4e-06 58.5 49 65.3
A04p12060 Brassica napus HOM05D003021 ORTHO05D002235 1.4e-06 58.5 36 86.1
BraA04t16870Z Brassica rapa HOM05D003021 ORTHO05D002235 1.4e-06 58.5 36 86.1
ClCG04G012000 Citrullus lanatus HOM05D003021 ORTHO05D002235 1.4e-06 58.5 122 42.6
FvH4_5g14370 Fragaria vesca HOM05D003021 ORTHO05D002235 1.4e-06 58.5 107 43.0
RcHm_v2.0_Chr7g0182331 Rosa chinensis HOM05D003021 ORTHO05D002235 1.4e-06 58.5 44 70.5
AL7G50940 Arabidopsis lyrata HOM05D003021 ORTHO05D002235 1.8e-06 58.2 68 58.8
CAN.G606.81 Capsicum annuum HOM05D003021 ORTHO05D002235 1.8e-06 58.2 60 61.7
Gohir.D09G010600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 1.8e-06 58.2 52 59.6
MSTRG.1612 Avicennia marina HOM05D036756 ORTHO05D009846 2.4e-06 57.8 453 29.4
A10p28700 Brassica napus HOM05D009040 ORTHO05D002235 2.4e-06 57.8 50 60.0
BraA10t44917Z Brassica rapa HOM05D009040 ORTHO05D002235 2.4e-06 57.8 50 60.0
CARHR205360 Cardamine hirsuta HOM05D009040 ORTHO05D002235 2.4e-06 57.8 50 60.0
Prupe.5G200000 Prunus persica HOM05D003021 ORTHO05D002235 2.4e-06 57.8 65 53.8
SGA_v2.0_scaffold121G33031 Striga asiatica HOM05D009522 ORTHO05D009846 2.4e-06 57.8 41 70.7
Carub.0007s3655 Capsella rubella HOM05D003021 ORTHO05D002235 3.1e-06 57.4 68 58.8
CARHR263020 Cardamine hirsuta HOM05D003021 ORTHO05D002235 3.1e-06 57.4 49 69.4
Gohir.A09G011600 Gossypium hirsutum HOM05D003021 ORTHO05D002235 3.1e-06 57.4 52 59.6
Gorai.006G012200 Gossypium raimondii HOM05D003021 ORTHO05D002235 3.1e-06 57.4 52 57.7
Sc04g0002990 Simmondsia chinensis HOM05D003021 ORTHO05D002235 3.1e-06 57.4 103 44.7
A03p03480 Brassica napus HOM05D009040 ORTHO05D002235 4.0e-06 57.0 50 58.0
BraA03t09698Z Brassica rapa HOM05D009040 ORTHO05D002235 4.0e-06 57.0 50 58.0
CSS0009260 Camellia sinensis var. sinensis HOM05D003021 ORTHO05D002235 4.0e-06 57.0 36 83.3
CAN.G638.53 Capsicum annuum HOM05D003021 ORTHO05D002235 4.0e-06 57.0 60 61.7
Nitab4.5_0001211g0040 Nicotiana tabacum HOM05D003021 ORTHO05D022173 4.0e-06 57.0 49 61.2
Nitab4.5_0002881g0010 Nicotiana tabacum HOM05D003021 ORTHO05D022173 4.0e-06 57.0 51 58.8
PGSC0003DMG400024656 Solanum tuberosum HOM05D003021 ORTHO05D022173 4.0e-06 57.0 49 61.2
BolC3t12928H Brassica oleracea HOM05D009040 ORTHO05D002235 5.3e-06 56.6 50 58.0
CANSAT80G0381 Cannabis sativa HOM05D003021 ORTHO05D002235 5.3e-06 56.6 43 72.1
CiPaw.07G212500 Carya illinoinensis HOM05D013263 ORTHO05D009846 5.3e-06 56.6 398 31.9
Duzib187G1602 Durio zibethinus HOM05D019025 ORTHO05D009846 6.9e-06 56.2 441 27.4
Lalb_Chr23g0269121 Lupinus albus HOM05D013197 ORTHO05D012811 6.9e-06 56.2 471 29.5
Peaxi162Scf00045g01739 Petunia axillaris HOM05D017514 ORTHO05D009846 6.9e-06 56.2 452 30.3
THA.LOC104801387 Tarenaya hassleriana HOM05D009040 ORTHO05D002235 6.9e-06 56.2 113 41.6
TPR.G1990 Trifolium pratense HOM05D014856 ORTHO05D002235 6.9e-06 56.2 48 68.8


User provided reference genes

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