Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G907.20 Capsicum annuum HOM05D004553 ORTHO05D005426 2.9e-35 151.4 77 100.0
CAN.G159.14 Capsicum annuum HOM05D004553 ORTHO05D005426 1.7e-19 99.0 61 83.6
CAN.G795.4 Capsicum annuum HOM05D004553 ORTHO05D005426 2.2e-14 82.0 63 69.8
Nitab4.5_0001839g0070 Nicotiana tabacum HOM05D004553 ORTHO05D005426 1.7e-11 72.4 40 85.0
Solyc08g077830.1 Solanum lycopersicum HOM05D004553 ORTHO05D005426 5.0e-11 70.9 40 87.5
Sopen08g026340 Solanum pennellii HOM05D004553 ORTHO05D005426 5.0e-11 70.9 40 87.5
CAN.G572.12 Capsicum annuum HOM05D004553 ORTHO05D005426 1.1e-10 69.7 40 85.0
Cc03_g10870 Coffea canephora HOM05D004553 ORTHO05D005426 1.4e-10 69.3 40 82.5
Atru.chr5.1915 Acer truncatum HOM05D004553 ORTHO05D005426 2.5e-10 68.6 40 80.0
Nitab4.5_0000500g0290 Nicotiana tabacum HOM05D004553 ORTHO05D005426 2.5e-10 68.6 40 82.5
PGSC0003DMG400026216 Solanum tuberosum HOM05D004553 ORTHO05D005426 2.5e-10 68.6 40 85.0
CANSAT21G2336 Cannabis sativa HOM05D004553 ORTHO05D005426 3.2e-10 68.2 40 77.5
Peaxi162Scf00324g00032 Petunia axillaris HOM05D004553 ORTHO05D005426 3.2e-10 68.2 40 80.0
arahy.Tifrunner.gnm1.ann1.1I5KFR Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-10 67.8 40 80.0
arahy.Tifrunner.gnm1.ann1.59X69N Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-10 67.8 40 80.0
arahy.Tifrunner.gnm1.ann1.9FA7V6 Arachis hypogaea HOM05D004553 ORTHO05D005426 4.2e-10 67.8 40 80.0
Cpa.g.sc50.47 Carica papaya HOM05D004553 ORTHO05D005426 4.2e-10 67.8 40 80.0
TPR.G18834 Trifolium pratense HOM05D004553 ORTHO05D005426 4.2e-10 67.8 40 77.5
AUR62011903 Chenopodium quinoa HOM05D004553 ORTHO05D005426 7.2e-10 67.0 49 67.3
Hund09587 Selenicereus undatus HOM05D004553 ORTHO05D005426 1.2e-09 66.2 40 75.0
EL10Ac5g10427 Beta vulgaris HOM05D004553 ORTHO05D005426 1.6e-09 65.9 40 75.0
COL.COLO4_05596 Corchorus olitorius HOM05D004553 ORTHO05D005426 1.6e-09 65.9 40 77.5
Oeu025823.1 Olea europaea HOM05D004553 ORTHO05D005426 1.6e-09 65.9 40 82.5
arahy.Tifrunner.gnm1.ann1.6P10V3 Arachis hypogaea HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Carub.0005s2503 Capsella rubella HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Duzib138G1605 Durio zibethinus HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Glyma.03G161100 Glycine max HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 77.5
Gohir.A07G211100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Gohir.D07G217100 Gossypium hirsutum HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Gorai.001G251500 Gossypium raimondii HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Prupe.8G227700 Prunus persica HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Thecc.01G262600 Theobroma cacao HOM05D004553 ORTHO05D005426 2.1e-09 65.5 40 75.0
Actinidia21228 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.7e-09 65.1 40 77.5
Actinidia23392 Actinidia chinensis HOM05D004553 ORTHO05D005426 2.7e-09 65.1 40 77.5
TAR636G3311 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.7e-09 65.1 40 75.0
AUR62024744 Chenopodium quinoa HOM05D004553 ORTHO05D005426 3.6e-09 64.7 49 65.3
TPR.G5760 Trifolium pratense HOM05D004553 ORTHO05D005426 3.6e-09 64.7 40 75.0
HanXRQChr10g0281111 Helianthus annuus HOM05D004553 ORTHO05D005426 4.6e-09 64.3 40 75.0
Hma1.2p1_0273F.1_g109950 Hydrangea macrophylla HOM05D004553 ORTHO05D005426 4.6e-09 64.3 40 77.5
Dinv34597 Davidia involucrata HOM05D004553 ORTHO05D005426 6.1e-09 63.9 40 75.0
MD05G1201100 Malus domestica HOM05D004553 ORTHO05D005426 6.1e-09 63.9 40 72.5
Manes.05G087500 Manihot esculenta HOM05D004553 ORTHO05D005426 6.1e-09 63.9 40 75.0
PGR044G0761 Punica granatum HOM05D004553 ORTHO05D005426 6.1e-09 63.9 40 72.5
Ca_02526_v3 Cicer arietinum L. HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
Eucgr.K03287 Eucalyptus grandis HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 77.5
FvH4_2g22010 Fragaria vesca HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
FAN15G2654 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
FAN20G1146 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
FAN24G1077 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
FAN27G3448 Fragaria x ananassa HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
Psat0s2087g0120 Pisum sativum HOM05D004553 ORTHO05D005426 7.9e-09 63.5 50 64.0
RcHm_v2.0_Chr6g0288871 Rosa chinensis HOM05D004553 ORTHO05D005426 7.9e-09 63.5 40 72.5
AL5G39880 Arabidopsis lyrata HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
AT3G58180 Arabidopsis thaliana HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
BcaC07g40268 Brassica carinata HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
C08p33760 Brassica napus HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
BolC8t50975H Brassica oleracea HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
Ciclev10021217m.g Citrus clementina HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
Medtr7g096510 Medicago truncatula HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 70.0
Psat0s2088g0080 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 75.0
Psat0s2295g0120 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
Psat3g059120 Pisum sativum HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
Sp5g04540 Schrenkiella parvula HOM05D004553 ORTHO05D005426 1.0e-08 63.2 40 72.5
A07p23970 Brassica napus HOM05D004553 ORTHO05D005426 1.4e-08 62.8 40 72.5
CiPaw.03G261300 Carya illinoinensis HOM05D004553 ORTHO05D005426 1.4e-08 62.8 40 72.5
DCAR_012530 Daucus carota HOM05D004553 ORTHO05D005426 1.4e-08 62.8 40 72.5
Lsat_1_v5_gn_9_9101 Lactuca sativa HOM05D004553 ORTHO05D005426 1.4e-08 62.8 40 70.0
MD10G1187900 Malus domestica HOM05D004553 ORTHO05D005426 1.8e-08 62.4 40 70.0
PSO541G5588 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-08 62.4 40 75.0
PSO675G7515 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-08 62.4 40 75.0
PSO832G2284 Papaver somniferum HOM05D004553 ORTHO05D005426 1.8e-08 62.4 40 75.0
Aa31LG10G12900 Aethionema arabicum HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 72.5
BcaB02g07544 Brassica carinata HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
BcaC07g40188 Brassica carinata HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
A09p50940 Brassica napus HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
BraA07t30048Z Brassica rapa HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
BraA09t40540Z Brassica rapa HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
Cfa002394 Carpinus fangiana HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 72.5
Haze_24589 Corylus avellana HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 72.5
Haze_24593 Corylus avellana HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 72.5
THA.LOC104802841 Tarenaya hassleriana HOM05D004553 ORTHO05D005426 2.3e-08 62.0 40 70.0
Ah.02g111810 Amaranthus hybridus HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 70.0
BcaC08g44904 Brassica carinata HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 70.0
C06p25240 Brassica napus HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 70.0
BolC6t37683H Brassica oleracea HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 70.0
Phvul.001G159000 Phaseolus vulgaris HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 72.5
Sed0016387 Sechium edule HOM05D004553 ORTHO05D005426 3.0e-08 61.6 49 63.3
VMungo1383G1775 Vigna mungo HOM05D004553 ORTHO05D005426 3.0e-08 61.6 40 72.5
Aqoxy5G00280 Aquilegia oxysepala HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 75.0
Migut.D00406 Erythranthe guttata HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 75.0
Thhalv10006107m.g Eutrema salsugineum HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 70.0
Nn3g19599 Nelumbo nucifera HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 75.0
Nitab4.5_0009451g0050 Nicotiana tabacum HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 77.5
QL09p037745 Quercus lobata HOM05D004553 ORTHO05D005426 3.9e-08 61.2 49 61.2
Sed0015397 Sechium edule HOM05D004553 ORTHO05D005426 3.9e-08 61.2 40 72.5
DCAR_009311 Daucus carota HOM05D004553 ORTHO05D005426 5.1e-08 60.8 40 67.5
MBI17_g17502_MAGBIO Magnolia biondii HOM05D004553 ORTHO05D005426 5.1e-08 60.8 40 72.5
GSVIVG01028297001 Vitis vinifera HOM05D004553 ORTHO05D005426 6.7e-08 60.5 40 70.0
ECA247G2484 Erigeron canadensis HOM05D004553 ORTHO05D005426 8.8e-08 60.1 40 70.0
Lalb_Chr20g0107851 Lupinus albus HOM05D004553 ORTHO05D005426 8.8e-08 60.1 40 72.5
Os12g0626100 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 8.8e-08 60.1 40 67.5
Zm00001eb259150 Zea mays HOM05D004553 ORTHO05D005426 8.8e-08 60.1 40 67.5
ClCG09G008080 Citrullus lanatus HOM05D004553 ORTHO05D005426 1.1e-07 59.7 40 70.0
MELO3C012740.2 Cucumis melo HOM05D004553 ORTHO05D005426 1.1e-07 59.7 40 70.0
Potri.002G041400 Populus trichocarpa HOM05D004553 ORTHO05D005426 1.1e-07 59.7 49 57.1
CARHR168560 Cardamine hirsuta HOM05D004553 ORTHO05D005426 1.5e-07 59.3 51 54.9
Sabra02G0033000 Salix brachista HOM05D004553 ORTHO05D005426 1.5e-07 59.3 49 57.1
TWI18G0975 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 1.5e-07 59.3 40 72.5
TWI12G0019 Tripterygium wilfordii HOM05D004553 ORTHO05D005426 2.0e-07 58.9 40 72.5
TAR365G0062 Trochodendron aralioides HOM05D004553 ORTHO05D005426 2.0e-07 58.9 40 70.0
Sc05g0000780 Simmondsia chinensis HOM05D004553 ORTHO05D005426 2.6e-07 58.5 38 65.8
CsaV3_7G026990 Cucumis sativus L. HOM05D004553 ORTHO05D005426 3.3e-07 58.2 40 67.5
Rhsim01G0266400 Rhododendron simsii HOM05D004553 ORTHO05D005426 3.3e-07 58.2 40 72.5
AagrBONN_evm.TU.Sc2ySwM_117.1472 Anthoceros agrestis HOM05D004553 ORTHO05D005426 4.4e-07 57.8 59 54.2
CDE04G1470 Ceratophyllum demersum HOM05D004553 ORTHO05D005426 4.4e-07 57.8 40 75.0
AagrBONN_evm.TU.Sc2ySwM_228.3863 Anthoceros agrestis HOM05D004553 ORTHO05D005426 5.7e-07 57.4 59 54.2
Lj1A269G34 Lonicera japonica HOM05D004553 ORTHO05D005426 5.7e-07 57.4 40 67.5
SGA_v2.0_scaffold31G12652 Striga asiatica HOM05D004553 ORTHO05D005426 5.7e-07 57.4 40 70.0
unitig_8.g3887 Utricularia gibba HOM05D004553 ORTHO05D005426 5.7e-07 57.4 40 70.0
vmacro03822 Vaccinium macrocarpon HOM05D004553 ORTHO05D005426 5.7e-07 57.4 40 70.0
MSTRG.3646 Avicennia marina HOM05D004553 ORTHO05D005426 9.7e-07 56.6 40 75.0
Mapoly0065s0014 Marchantia polymorpha HOM05D004553 ORTHO05D005426 9.7e-07 56.6 40 62.5
Potri.005G221700 Populus trichocarpa HOM05D004553 ORTHO05D005426 9.7e-07 56.6 40 62.5
Glyma.19G162800 Glycine max HOM05D001448 ORTHO05D005781 1.3e-06 56.2 38 68.4
Os12g0163300 Oryza sativa ssp. japonica HOM05D004553 ORTHO05D005426 2.8e-06 55.1 40 62.5
AagrBONN_evm.TU.Sc2ySwM_228.2479 Anthoceros agrestis HOM05D004553 ORTHO05D005426 3.7e-06 54.7 40 65.0


User provided reference genes

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