Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 2.4e-40 168.3 80 100.0
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 9.4e-21 103.2 96 58.3
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.3e-19 98.6 96 56.2
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.5e-18 95.9 96 56.2
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.8e-16 89.0 95 53.7
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 7.0e-16 87.0 95 55.8
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 1.2e-15 86.3 96 51.0
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 4.5e-15 84.3 91 51.6
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 4.5e-15 84.3 93 53.8
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 4.5e-15 84.3 93 52.7
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 5.9e-15 84.0 94 52.1
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 5.9e-15 84.0 94 52.1
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 2.2e-14 82.0 94 52.1
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 2.9e-14 81.6 91 52.7
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 2.9e-14 81.6 79 57.0
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 5.0e-14 80.9 93 51.6
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 6.5e-14 80.5 101 46.5
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 6.5e-14 80.5 94 53.2
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.5e-14 80.5 94 53.2
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.5e-14 80.5 94 53.2
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 6.5e-14 80.5 94 53.2
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 6.5e-14 80.5 82 56.1
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.5e-14 80.5 93 53.8
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 6.5e-14 80.5 94 53.2
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.1e-13 79.7 96 47.9
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 1.1e-13 79.7 91 49.5
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.1e-13 79.7 94 48.9
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.1e-13 79.7 96 50.0
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 1.1e-13 79.7 96 49.0
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.9e-13 79.0 94 48.9
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 1.9e-13 79.0 85 54.1
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.9e-13 79.0 85 51.8
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.9e-13 79.0 93 49.5
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 1.9e-13 79.0 93 50.5
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 1.9e-13 79.0 96 47.9
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 2.5e-13 78.6 96 47.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 2.5e-13 78.6 96 45.8
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 2.5e-13 78.6 93 50.5
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.5e-13 78.6 85 51.8
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 3.2e-13 78.2 78 53.8
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 3.2e-13 78.2 96 47.9
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 3.2e-13 78.2 95 45.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 3.2e-13 78.2 90 47.8
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 3.2e-13 78.2 90 47.8
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 3.2e-13 78.2 90 47.8
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 4.2e-13 77.8 102 46.1
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 5.5e-13 77.4 102 46.1
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 5.5e-13 77.4 94 52.1
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 5.5e-13 77.4 93 50.5
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 5.5e-13 77.4 79 57.0
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 5.5e-13 77.4 96 49.0
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 7.2e-13 77.0 85 51.8
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.2e-13 77.0 93 50.5
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.2e-13 77.0 93 50.5
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 7.2e-13 77.0 93 50.5
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 7.2e-13 77.0 93 49.5
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 7.2e-13 77.0 100 47.0
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 7.2e-13 77.0 91 49.5
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 7.2e-13 77.0 103 47.6
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 9.4e-13 76.6 97 48.5
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 9.4e-13 76.6 77 55.8
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 9.4e-13 76.6 81 53.1
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 9.4e-13 76.6 91 51.6
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 9.4e-13 76.6 105 45.7
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 9.4e-13 76.6 79 57.0
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.2e-12 76.3 102 45.1
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 1.2e-12 76.3 103 45.6
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.2e-12 76.3 101 47.5
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 1.2e-12 76.3 85 52.9
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.2e-12 76.3 102 46.1
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.6e-12 75.9 78 53.8
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.6e-12 75.9 79 54.4
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 1.6e-12 75.9 79 54.4
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.6e-12 75.9 85 49.4
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.6e-12 75.9 82 53.7
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 2.1e-12 75.5 106 46.2
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 2.1e-12 75.5 91 48.4
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.1e-12 75.5 73 56.2
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 2.1e-12 75.5 93 49.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 2.1e-12 75.5 96 46.9
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 2.7e-12 75.1 107 45.8
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 2.7e-12 75.1 97 49.5
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.7e-12 75.1 73 56.2
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 2.7e-12 75.1 95 45.3
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.7e-12 75.1 96 45.8
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 2.7e-12 75.1 93 49.5
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 2.7e-12 75.1 103 46.6
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.6e-12 74.7 102 44.1
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.6e-12 74.7 73 56.2
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 3.6e-12 74.7 95 48.4
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 3.6e-12 74.7 96 49.0
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.6e-12 74.7 98 48.0
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 3.6e-12 74.7 77 53.2
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 3.6e-12 74.7 76 53.9
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 4.7e-12 74.3 105 45.7
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.7e-12 74.3 76 53.9
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 4.7e-12 74.3 76 53.9
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 4.7e-12 74.3 90 48.9
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 4.7e-12 74.3 86 51.2
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.1e-12 73.9 76 55.3
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 6.1e-12 73.9 76 55.3
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 6.1e-12 73.9 73 54.8
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 6.1e-12 73.9 77 53.2
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.1e-12 73.9 73 54.8
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 6.1e-12 73.9 73 54.8
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.1e-12 73.9 73 54.8
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 6.1e-12 73.9 73 54.8
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 6.1e-12 73.9 82 50.0
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 8.0e-12 73.6 73 54.8
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 8.0e-12 73.6 87 49.4
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 8.0e-12 73.6 73 54.8
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 8.0e-12 73.6 105 43.8
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 8.0e-12 73.6 105 43.8
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 8.0e-12 73.6 105 43.8
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 8.0e-12 73.6 105 43.8
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 8.0e-12 73.6 105 42.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 8.0e-12 73.6 70 57.1
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 8.0e-12 73.6 89 50.6
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.0e-12 73.6 77 54.5
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.0e-12 73.6 77 54.5
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 8.0e-12 73.6 87 51.7
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 8.0e-12 73.6 96 45.8
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 1.0e-11 73.2 73 54.8
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 1.0e-11 73.2 79 51.9
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.4e-11 72.8 94 45.7
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 1.8e-11 72.4 70 55.7
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 1.8e-11 72.4 79 53.2
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 1.8e-11 72.4 74 52.7
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.3e-11 72.0 69 56.5
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 3.0e-11 71.6 79 53.2
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 4.0e-11 71.2 76 52.6
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.0e-11 71.2 77 50.6
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.0e-11 71.2 87 46.0
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 5.2e-11 70.9 75 54.7
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 5.2e-11 70.9 93 47.3
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 6.7e-11 70.5 63 55.6
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 1.1e-10 69.7 58 62.1
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 1.1e-10 69.7 94 44.7
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.1e-10 69.7 72 55.6
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.5e-10 69.3 93 46.2
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.5e-10 69.3 78 51.3
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 4.4e-10 67.8 63 55.6
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 1.7e-09 65.9 75 50.7
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 6.3e-09 63.9 82 47.6
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 8.2e-09 63.5 101 43.6
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 1.1e-08 63.2 55 60.0
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.0e-07 58.9 88 44.3
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 2.0e-07 58.9 88 44.3
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.7e-06 55.8 65 46.2
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.8e-06 54.7 46 58.7


User provided reference genes

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