Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G906.5 Capsicum annuum HOM05D004543 ORTHO05D006042 0.0e+00 1433.7 745 100.0
PGSC0003DMG400026304 Solanum tuberosum HOM05D004543 ORTHO05D006042 0.0e+00 1251.1 750 86.0
Sopen08g002610 Solanum pennellii HOM05D004543 ORTHO05D006042 0.0e+00 1245.7 750 85.7
Nitab4.5_0001187g0130 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1204.9 756 81.6
Nitab4.5_0002497g0060 Nicotiana tabacum HOM05D004543 ORTHO05D006042 0.0e+00 1196.4 756 81.2
Peaxi162Scf00045g00192 Petunia axillaris HOM05D004543 ORTHO05D006042 0.0e+00 1142.1 762 78.6
CSS0037462 Camellia sinensis var. sinensis HOM05D004543 ORTHO05D006042 3.2e-296 1021.5 768 70.3
Dinv11159 Davidia involucrata HOM05D004543 ORTHO05D006042 1.6e-295 1019.2 766 70.2
Actinidia25587 Actinidia chinensis HOM05D004543 ORTHO05D006042 2.3e-291 1005.4 768 68.0
Lj9C477T19 Lonicera japonica HOM05D004543 ORTHO05D006042 4.4e-290 1001.1 801 67.8
vmacro19212 Vaccinium macrocarpon HOM05D004543 ORTHO05D006042 9.2e-288 993.4 769 67.6
Actinidia15838 Actinidia chinensis HOM05D004543 ORTHO05D006042 7.8e-287 990.3 777 67.7
Oeu056011.1 Olea europaea HOM05D004543 ORTHO05D006042 1.7e-286 989.2 756 67.3
Migut.I00508 Erythranthe guttata HOM05D004543 ORTHO05D006042 5.1e-286 987.6 750 68.4
Cc07_g18860 Coffea canephora HOM05D004543 ORTHO05D006042 2.8e-284 981.9 770 66.9
Haze_07231 Corylus avellana HOM05D004543 ORTHO05D006042 1.1e-283 979.9 751 67.9
Cfa018837 Carpinus fangiana HOM05D004543 ORTHO05D006042 4.0e-283 978.0 751 67.9
Ciclev10018979m.g Citrus clementina HOM05D004543 ORTHO05D006042 4.0e-283 978.0 751 67.2
Thecc.06G039500 Theobroma cacao HOM05D004543 ORTHO05D006042 4.0e-283 978.0 747 67.6
Manes.06G118300 Manihot esculenta HOM05D004543 ORTHO05D006042 4.9e-281 971.1 751 66.4
CiPaw.11G008900 Carya illinoinensis HOM05D004543 ORTHO05D006042 8.4e-281 970.3 750 67.6
GSVIVG01008523001 Vitis vinifera HOM05D004543 ORTHO05D006042 1.6e-279 966.1 749 66.5
COL.COLO4_26675 Corchorus olitorius HOM05D004543 ORTHO05D006042 2.1e-279 965.7 748 66.6
Duzib138G1537 Durio zibethinus HOM05D004543 ORTHO05D006042 1.1e-277 959.9 748 67.0
PGR083G0162 Punica granatum HOM05D004543 ORTHO05D006042 1.6e-276 956.1 751 65.6
VMungo1215G3183 Vigna mungo HOM05D004543 ORTHO05D006042 1.6e-276 956.1 751 66.0
Atru.chr9.1076 Acer truncatum HOM05D004543 ORTHO05D006042 2.4e-275 952.2 750 65.6
TWI23G0493 Tripterygium wilfordii HOM05D004543 ORTHO05D006042 2.4e-275 952.2 751 65.5
FAN13G0766 Fragaria x ananassa HOM05D004543 ORTHO05D006042 5.3e-275 951.0 746 67.4
Ca_00911_v3 Cicer arietinum L. HOM05D004543 ORTHO05D006042 9.0e-275 950.3 751 65.8
RcHm_v2.0_Chr7g0190411 Rosa chinensis HOM05D004543 ORTHO05D006042 9.0e-275 950.3 746 65.8
arahy.Tifrunner.gnm1.ann1.9QW7J0 Arachis hypogaea HOM05D004543 ORTHO05D006042 1.2e-274 949.9 747 65.6
arahy.Tifrunner.gnm1.ann1.28ZGNX Arachis hypogaea HOM05D004543 ORTHO05D006042 2.6e-274 948.7 747 65.5
Lalb_Chr07g0183361 Lupinus albus HOM05D004543 ORTHO05D006042 4.5e-274 948.0 751 66.0
MD06G1143400 Malus domestica HOM05D004543 ORTHO05D006042 5.8e-274 947.6 751 65.5
unitig_8.g3033 Utricularia gibba HOM05D004543 ORTHO05D006042 7.6e-274 947.2 748 65.1
Phvul.003G210200 Phaseolus vulgaris HOM05D004543 ORTHO05D006042 1.3e-273 946.4 751 64.8
Gorai.007G187600 Gossypium raimondii HOM05D004543 ORTHO05D006042 3.8e-273 944.9 748 65.4
FvH4_5g08050 Fragaria vesca HOM05D004543 ORTHO05D006042 4.9e-273 944.5 763 65.8
Glyma.17G129100 Glycine max HOM05D004543 ORTHO05D006042 6.4e-273 944.1 751 65.2
Eucgr.B00121 Eucalyptus grandis HOM05D004543 ORTHO05D006042 1.9e-272 942.6 750 66.0
FAN18G3295 Fragaria x ananassa HOM05D004543 ORTHO05D006042 1.9e-272 942.6 778 64.8
FAN04G2916 Fragaria x ananassa HOM05D004543 ORTHO05D006042 9.3e-272 940.3 752 66.5
QL10p004063 Quercus lobata HOM05D004543 ORTHO05D006042 9.3e-272 940.3 767 65.1
Glyma.05G047300 Glycine max HOM05D004543 ORTHO05D006042 2.1e-271 939.1 751 64.8
Nn3g16500 Nelumbo nucifera HOM05D004543 ORTHO05D006042 6.0e-271 937.6 743 65.4
Hund02429 Selenicereus undatus HOM05D004543 ORTHO05D006042 7.9e-271 937.2 751 64.2
Gohir.D11G175000 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.0e-270 936.8 748 65.1
Hma1.2p1_1271F.1_g271760 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-270 936.8 710 68.9
Gohir.A11G168800 Gossypium hirsutum HOM05D004543 ORTHO05D006042 1.8e-270 936.0 748 65.1
Potri.012G096100 Populus trichocarpa HOM05D004543 ORTHO05D006042 1.8e-270 936.0 747 65.7
MD14G1158600 Malus domestica HOM05D004543 ORTHO05D006042 2.3e-270 935.6 751 65.0
SGA_v2.0_scaffold161G37784 Striga asiatica HOM05D004543 ORTHO05D006042 2.3e-270 935.6 751 65.4
Aqoxy5G03415 Aquilegia oxysepala HOM05D004543 ORTHO05D006042 3.3e-269 931.8 743 64.7
CANSAT80G2145 Cannabis sativa HOM05D004543 ORTHO05D006042 7.4e-269 930.6 750 64.1
AUR62029871 Chenopodium quinoa HOM05D004543 ORTHO05D006042 1.3e-268 929.9 751 64.8
Migut.I00509 Erythranthe guttata HOM05D004543 ORTHO05D006042 6.2e-268 927.5 746 64.6
Lsat_1_v5_gn_4_76761 Lactuca sativa HOM05D004543 ORTHO05D006042 4.0e-267 924.9 773 62.5
Potri.015G094000 Populus trichocarpa HOM05D004543 ORTHO05D006042 6.9e-267 924.1 762 64.2
Prupe.5G152600 Prunus persica HOM05D004543 ORTHO05D006042 9.0e-267 923.7 753 64.3
Sabra15G0115500 Salix brachista HOM05D004543 ORTHO05D006042 2.6e-266 922.2 762 63.4
AL7G28340 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 4.5e-266 921.4 745 64.6
Medtr4g103610 Medicago truncatula HOM05D004543 ORTHO05D006042 9.9e-266 920.2 750 64.0
Carub.0007s1621 Capsella rubella HOM05D004543 ORTHO05D006042 8.4e-265 917.1 745 64.0
ClCG11G005570 Citrullus lanatus HOM05D004543 ORTHO05D006042 5.5e-264 914.4 770 63.2
CsaV3_6G002430 Cucumis sativus L. HOM05D004543 ORTHO05D006042 5.5e-264 914.4 768 63.2
HanXRQChr09g0273071 Helianthus annuus HOM05D004543 ORTHO05D006042 1.2e-263 913.3 770 62.6
EL10As4g23416 Beta vulgaris HOM05D004543 ORTHO05D006042 6.0e-263 911.0 752 64.4
Lj4g0012876 Lotus japonicus HOM05D004543 ORTHO05D006042 3.0e-262 908.7 751 63.4
Sed0023388 Sechium edule HOM05D004543 ORTHO05D006042 1.1e-261 906.7 768 62.9
Sed0026192 Sechium edule HOM05D004543 ORTHO05D006042 1.3e-260 903.3 750 63.5
THA.LOC104811593 Tarenaya hassleriana HOM05D004543 ORTHO05D006042 3.7e-260 901.7 750 62.8
MELO3C025044.2 Cucumis melo HOM05D004543 ORTHO05D006042 1.5e-258 896.3 768 62.5
ECA232G1394 Erigeron canadensis HOM05D004543 ORTHO05D006042 1.5e-258 896.3 745 62.7
PSO782G5417 Papaver somniferum HOM05D004543 ORTHO05D006042 2.0e-258 896.0 749 61.4
AT4G24840 Arabidopsis thaliana HOM05D004543 ORTHO05D006042 3.4e-258 895.2 745 62.8
PSO063G5574 Papaver somniferum HOM05D004543 ORTHO05D006042 4.9e-257 891.3 749 61.3
Cpa.g.sc13.138 Carica papaya HOM05D004543 ORTHO05D006042 3.2e-256 888.6 750 63.2
Thhalv10024490m.g Eutrema salsugineum HOM05D004543 ORTHO05D006042 1.6e-255 886.3 746 61.5
BcaC06g32853 Brassica carinata HOM05D004543 ORTHO05D006042 3.5e-255 885.2 746 62.3
BolC7t45874H Brassica oleracea HOM05D004543 ORTHO05D006042 3.5e-255 885.2 746 62.3
C01p20140 Brassica napus HOM05D004543 ORTHO05D006042 6.7e-254 880.9 746 61.4
BolC1t01943H Brassica oleracea HOM05D004543 ORTHO05D006042 6.7e-254 880.9 746 61.4
Sp7g22830 Schrenkiella parvula HOM05D004543 ORTHO05D006042 1.9e-253 879.4 748 61.4
A01p16150 Brassica napus HOM05D004543 ORTHO05D006042 4.3e-253 878.2 746 61.1
BraA01t01551Z Brassica rapa HOM05D004543 ORTHO05D006042 4.3e-253 878.2 746 61.1
C07p53840 Brassica napus HOM05D004543 ORTHO05D006042 7.4e-253 877.5 746 61.7
A03p55600 Brassica napus HOM05D004543 ORTHO05D006042 7.6e-250 867.5 746 61.1
BraA03t14627Z Brassica rapa HOM05D004543 ORTHO05D006042 7.6e-250 867.5 746 61.1
Carub.0003s0428 Capsella rubella HOM05D004543 ORTHO05D006042 2.9e-249 865.5 747 60.9
Aa31LG7G11000 Aethionema arabicum HOM05D004543 ORTHO05D006042 1.9e-248 862.8 772 59.6
AL3G15410 Arabidopsis lyrata HOM05D004543 ORTHO05D006042 5.5e-248 861.3 741 60.7
Solyc08g006660.2 Solanum lycopersicum HOM05D004543 ORTHO05D006042 7.4e-245 850.9 531 83.1
Sp6g25960 Schrenkiella parvula HOM05D004543 ORTHO05D006042 3.7e-244 848.6 728 60.3
FAN08G2446 Fragaria x ananassa HOM05D004543 ORTHO05D006042 2.1e-239 832.8 760 60.1
TAR622G0482 Trochodendron aralioides HOM05D004543 ORTHO05D006042 1.0e-238 830.5 679 64.7
AUR62025843 Chenopodium quinoa HOM05D004543 ORTHO05D006042 2.0e-234 816.2 662 64.4
Zm00001eb210790 Zea mays HOM05D004543 ORTHO05D006042 2.6e-234 815.8 740 58.4
Os03g0849600 Oryza sativa ssp. japonica HOM05D004543 ORTHO05D006042 4.5e-234 815.1 750 57.7
A03p08790 Brassica napus HOM05D004543 ORTHO05D006042 5.9e-234 814.7 729 58.8
CDE05G1945 Ceratophyllum demersum HOM05D004543 ORTHO05D006042 8.5e-233 810.8 747 58.1
ATR0561G088 Amborella trichopoda HOM05D004543 ORTHO05D006042 2.1e-231 806.2 742 57.8
BcaNung06004 Brassica carinata HOM05D004543 ORTHO05D006042 1.8e-230 803.1 694 61.1
C03p10280 Brassica napus HOM05D004543 ORTHO05D006042 6.7e-230 801.2 730 58.6
BraA03t10204Z Brassica rapa HOM05D004543 ORTHO05D006042 6.7e-230 801.2 730 58.6
SEGI_19802 Sequoiadendron giganteum HOM05D004543 ORTHO05D006042 1.4e-227 793.5 751 55.4
SHI28598 Sapria himalayana HOM05D004543 ORTHO05D006042 5.9e-226 788.1 814 54.4
BolC3t13508H Brassica oleracea HOM05D004543 ORTHO05D006042 7.7e-226 787.7 729 57.5
Dinv04875 Davidia involucrata HOM05D004543 ORTHO05D006042 1.7e-225 786.6 527 75.3
Psat0s3466g0040 Pisum sativum HOM05D004543 ORTHO05D006042 1.9e-224 783.1 626 64.7
BcaB01g05188 Brassica carinata HOM05D004543 ORTHO05D006042 1.8e-222 776.5 711 57.8
Rhsim08G0188800 Rhododendron simsii HOM05D004543 ORTHO05D006042 1.2e-213 747.3 530 71.7
Mapoly0003s0046 Marchantia polymorpha HOM05D004543 ORTHO05D006042 2.1e-207 726.5 752 52.5
Sc04g0000730 Simmondsia chinensis HOM05D004543 ORTHO05D006042 1.4e-206 723.8 535 68.4
TPR.G19235 Trifolium pratense HOM05D004543 ORTHO05D006042 2.2e-196 689.9 644 58.5
CARHR232260 Cardamine hirsuta HOM05D004543 ORTHO05D006042 3.7e-196 689.1 534 65.5
HPP92_007000 Vanilla planifolia HOM05D004543 ORTHO05D006042 8.3e-196 688.0 768 50.7
BcaNung04937 Brassica carinata HOM05D004543 ORTHO05D006042 5.4e-195 685.3 693 54.1
AagrBONN_evm.TU.Sc2ySwM_344.2190 Anthoceros agrestis HOM05D004543 ORTHO05D006042 2.5e-192 676.4 739 49.5
Pp3c17_20170 Physcomitrium patens HOM05D004543 ORTHO05D006042 2.8e-191 672.9 745 49.8
Pp3c14_17740 Physcomitrium patens HOM05D004543 ORTHO05D006042 1.2e-189 667.5 752 49.9
SMO347G0349 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 2.3e-182 643.3 728 46.7
DCAR_026221 Daucus carota HOM05D004543 ORTHO05D006042 1.9e-155 553.9 751 45.1
CBR_g49627 Chara braunii HOM05D004543 ORTHO05D006042 5.1e-145 519.2 606 47.9
Sabra12G0070400 Salix brachista HOM05D004543 ORTHO05D006042 1.4e-129 468.0 393 64.6
Manes.14G052401 Manihot esculenta HOM05D004543 ORTHO05D006042 5.9e-125 452.6 346 65.3
PRCOL_00002621 Prasinoderma coloniale HOM05D004543 ORTHO05D006042 1.8e-118 431.0 705 36.7
Zm00001eb064480 Zea mays HOM05D004543 ORTHO05D006042 1.1e-112 411.8 370 58.9
Medtr3g105000 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-102 378.3 474 48.5
Hma1.2p1_0140F.1_g063450 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.6e-85 321.6 324 54.6
MCO07G105 Micromonas commoda HOM05D004543 ORTHO05D006042 1.5e-83 315.1 750 28.8
Cre09.g402750 Chlamydomonas reinhardtii HOM05D004543 ORTHO05D006042 1.6e-82 311.6 844 30.9
HPP92_006979 Vanilla planifolia HOM05D004543 ORTHO05D006042 2.3e-65 254.6 534 36.7
Sc04g0000720 Simmondsia chinensis HOM05D004543 ORTHO05D006042 6.4e-55 219.9 213 55.4
TPR.G18590 Trifolium pratense HOM05D001327 ORTHO05D002270 5.1e-36 157.1 124 61.3
Lsat_1_v5_gn_5_92440 Lactuca sativa HOM05D004543 ORTHO05D006042 9.0e-33 146.4 154 51.9
Hma1.2p1_0140F.1_g063430 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 1.0e-31 142.9 214 45.8
TPR.G34490 Trifolium pratense HOM05D004543 ORTHO05D006042 2.2e-31 141.7 102 63.7
Medtr7g104380 Medicago truncatula HOM05D004543 ORTHO05D006042 4.6e-29 134.0 175 48.0
SEGI_01008 Sequoiadendron giganteum HOM05D004543 ORTHO05D037602 1.3e-28 132.5 113 61.1
PSO675G5444 Papaver somniferum HOM05D004543 ORTHO05D010954 2.4e-25 121.7 216 39.4
Medtr3g105005 Medicago truncatula HOM05D004543 ORTHO05D006042 3.1e-25 121.3 163 44.8
Rhsim02G0055400 Rhododendron simsii HOM05D004543 ORTHO05D006042 6.5e-23 113.6 93 61.3
vmacro20276 Vaccinium macrocarpon HOM05D004543 ORTHO05D037602 9.3e-22 109.8 81 69.1
SMO117G0159 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 1.4e-17 95.9 98 50.0
SMO301G0055 Selaginella moellendorffii HOM05D004543 ORTHO05D000231 3.1e-17 94.7 299 25.1
Rhsim05G0168000 Rhododendron simsii HOM05D003391 ORTHO05D005563 6.9e-17 93.6 81 56.8
Lsat_1_v5_gn_3_118241 Lactuca sativa HOM05D004543 ORTHO05D001664 2.0e-16 92.0 112 46.4
Rhsim04G0209800 Rhododendron simsii HOM05D004543 ORTHO05D006042 7.7e-16 90.1 81 55.6
TPR.G22932 Trifolium pratense HOM05D004543 ORTHO05D037602 3.8e-15 87.8 92 52.2
Hma1.2p1_0140F.1_g063440 Hydrangea macrophylla HOM05D004543 ORTHO05D006042 4.2e-14 84.3 64 62.5
Manes.14G052501 Manihot esculenta HOM05D004543 ORTHO05D006042 5.5e-14 84.0 193 37.8
Medtr1g076750 Medicago truncatula HOM05D004543 ORTHO05D006042 7.4e-11 73.6 79 53.2
Medtr6g087290 Medicago truncatula HOM05D004543 ORTHO05D006042 1.4e-09 69.3 101 41.6
SMO250G0003 Selaginella moellendorffii HOM05D004543 ORTHO05D006042 3.1e-09 68.2 65 50.8
Medtr0004s0190 Medicago truncatula HOM05D004543 ORTHO05D260927 4.5e-08 64.3 67 53.7
TPR.G19226 Trifolium pratense HOM05D004543 ORTHO05D006042 7.7e-08 63.5 56 58.9
FAN08G3116 Fragaria x ananassa HOM05D003545 ORTHO05D004720 4.2e-06 57.8 63 47.6
FAN06G0151 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.5e-06 57.4 63 47.6
FAN06G1316 Fragaria x ananassa HOM05D004543 ORTHO05D022695 5.5e-06 57.4 63 47.6


User provided reference genes

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