Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G906.10 Capsicum annuum HOM05D007008 ORTHO05D008622 2.5e-53 211.8 105 100.0
Solyc08g006700.3 Solanum lycopersicum HOM05D007008 ORTHO05D008622 6.1e-52 207.2 104 98.1
PGSC0003DMG400026283 Solanum tuberosum HOM05D007008 ORTHO05D008622 6.1e-52 207.2 104 98.1
MSTRG.13965 Avicennia marina HOM05D007008 ORTHO05D008622 8.2e-49 196.8 100 95.0
CDE05G1515 Ceratophyllum demersum HOM05D007008 ORTHO05D008622 3.1e-48 194.9 105 88.6
Nn2g14020 Nelumbo nucifera HOM05D007008 ORTHO05D008622 6.9e-48 193.7 100 93.0
CANSAT25G2981 Cannabis sativa HOM05D007008 ORTHO05D008622 9.0e-48 193.4 100 91.0
Thecc.09G014400 Theobroma cacao HOM05D007008 ORTHO05D008622 1.2e-47 193.0 100 92.0
Migut.A00362 Erythranthe guttata HOM05D007008 ORTHO05D008622 1.5e-47 192.6 100 92.0
QL02p018585 Quercus lobata HOM05D007008 ORTHO05D008622 1.5e-47 192.6 100 92.0
Sopen08g002640 Solanum pennellii HOM05D007008 ORTHO05D008622 2.0e-47 192.2 96 99.0
Ciclev10009999m.g Citrus clementina HOM05D007008 ORTHO05D008622 2.6e-47 191.8 100 92.0
Manes.03G007600 Manihot esculenta HOM05D007008 ORTHO05D008622 2.6e-47 191.8 100 91.0
Nn8g40044 Nelumbo nucifera HOM05D007008 ORTHO05D008622 2.6e-47 191.8 100 92.0
Rhsim02G0211800 Rhododendron simsii HOM05D007008 ORTHO05D008622 3.4e-47 191.4 100 90.0
TWI34G0293 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 4.5e-47 191.0 101 91.1
CiPaw.08G005100 Carya illinoinensis HOM05D007008 ORTHO05D008622 7.7e-47 190.3 100 91.0
Manes.16G130900 Manihot esculenta HOM05D007008 ORTHO05D008622 1.0e-46 189.9 100 90.0
Duzib187G1435 Durio zibethinus HOM05D007008 ORTHO05D008622 1.3e-46 189.5 100 89.0
Gohir.D06G104200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 1.3e-46 189.5 100 89.0
FvH4_2g41220 Fragaria vesca HOM05D007008 ORTHO05D008622 1.7e-46 189.1 100 90.0
Oeu048545.1 Olea europaea HOM05D007008 ORTHO05D008622 1.7e-46 189.1 101 89.1
Prupe.1G395400 Prunus persica HOM05D007008 ORTHO05D008622 2.2e-46 188.7 100 89.0
Duzib168G0569 Durio zibethinus HOM05D007008 ORTHO05D008622 2.9e-46 188.3 100 89.0
Gohir.A06G102300 Gossypium hirsutum HOM05D007008 ORTHO05D008622 2.9e-46 188.3 100 89.0
Oeu006861.2 Olea europaea HOM05D007008 ORTHO05D008622 2.9e-46 188.3 101 88.1
MSTRG.11785 Avicennia marina HOM05D007008 ORTHO05D008622 3.8e-46 188.0 100 90.0
FAN15G2831 Fragaria x ananassa HOM05D000756 ORTHO05D008622 5.0e-46 187.6 100 89.0
FAN27G1693 Fragaria x ananassa HOM05D007008 ORTHO05D008622 5.0e-46 187.6 100 89.0
MD15G1042200 Malus domestica HOM05D007008 ORTHO05D008622 5.0e-46 187.6 100 88.0
RcHm_v2.0_Chr6g0299291 Rosa chinensis HOM05D007008 ORTHO05D008622 5.0e-46 187.6 100 89.0
SGA_v2.0_scaffold4G02166 Striga asiatica HOM05D007008 ORTHO05D008622 5.0e-46 187.6 100 90.0
Atru.chr7.2552 Acer truncatum HOM05D007008 ORTHO05D008622 6.5e-46 187.2 100 89.0
SGA_v2.0_scaffold169G38605 Striga asiatica HOM05D007008 ORTHO05D008622 6.5e-46 187.2 101 87.1
Aqoxy7G03348 Aquilegia oxysepala HOM05D007008 ORTHO05D008622 8.5e-46 186.8 104 84.6
Eucgr.C04041 Eucalyptus grandis HOM05D007008 ORTHO05D008622 8.5e-46 186.8 100 87.0
Phvul.001G040900 Phaseolus vulgaris HOM05D007008 ORTHO05D008622 1.1e-45 186.4 100 90.0
Duzib150G0558 Durio zibethinus HOM05D007008 ORTHO05D008622 1.4e-45 186.0 100 87.0
MD08G1054800 Malus domestica HOM05D007008 ORTHO05D008622 1.4e-45 186.0 100 87.0
AUR62024793 Chenopodium quinoa HOM05D007008 ORTHO05D008622 2.5e-45 185.3 99 88.9
THA.LOC104799029 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 2.5e-45 185.3 100 88.0
TWI32G0141 Tripterygium wilfordii HOM05D007008 ORTHO05D008622 3.2e-45 184.9 101 86.1
TAR626G0196 Trochodendron aralioides HOM05D007008 ORTHO05D008622 3.2e-45 184.9 101 87.1
Potri.018G017300 Populus trichocarpa HOM05D007008 ORTHO05D008622 9.4e-45 183.3 100 88.0
Glyma.17G224100 Glycine max HOM05D007008 ORTHO05D008622 1.2e-44 183.0 100 87.0
Rhsim02G0210500 Rhododendron simsii HOM05D007008 ORTHO05D008622 1.2e-44 183.0 109 82.6
arahy.Tifrunner.gnm1.ann1.ENRJ0V Arachis hypogaea HOM05D007008 ORTHO05D008622 1.6e-44 182.6 100 87.0
Glyma.14G101000 Glycine max HOM05D007008 ORTHO05D008622 1.6e-44 182.6 100 88.0
Potri.006G265600 Populus trichocarpa HOM05D007008 ORTHO05D008622 1.6e-44 182.6 100 88.0
Gohir.A07G033600 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.6e-44 181.4 100 88.0
Gohir.D07G037200 Gossypium hirsutum HOM05D007008 ORTHO05D008622 3.6e-44 181.4 100 88.0
Gorai.001G038800 Gossypium raimondii HOM05D007008 ORTHO05D008622 3.6e-44 181.4 100 88.0
Lj5g0019856 Lotus japonicus HOM05D007008 ORTHO05D008622 4.6e-44 181.0 99 87.9
Sabra06G0208200 Salix brachista HOM05D007008 ORTHO05D008622 6.1e-44 180.6 102 84.3
EL10Ac2g02486 Beta vulgaris HOM05D007008 ORTHO05D008622 7.9e-44 180.3 99 85.9
Sed0015687 Sechium edule HOM05D007008 ORTHO05D008622 1.0e-43 179.9 100 84.0
Sabra18G0020700 Salix brachista HOM05D007008 ORTHO05D008622 1.4e-43 179.5 104 85.6
THA.LOC104824959 Tarenaya hassleriana HOM05D007008 ORTHO05D008622 1.4e-43 179.5 100 84.0
Lalb_Chr22g0361631 Lupinus albus HOM05D007008 ORTHO05D008622 1.8e-43 179.1 99 85.9
PSO170G4073 Papaver somniferum HOM05D007008 ORTHO05D008622 1.8e-43 179.1 100 85.0
PSO357G0206 Papaver somniferum HOM05D007008 ORTHO05D008622 1.8e-43 179.1 100 85.0
Sed0013935 Sechium edule HOM05D007008 ORTHO05D008622 2.3e-43 178.7 100 82.0
HanXRQChr03g0081451 Helianthus annuus HOM05D007008 ORTHO05D008622 3.0e-43 178.3 100 84.0
Hund02976 Selenicereus undatus HOM05D007008 ORTHO05D008622 3.9e-43 177.9 101 83.2
Eucgr.L00629 Eucalyptus grandis HOM05D007008 ORTHO05D008622 5.1e-43 177.6 111 78.4
HanXRQChr17g0538991 Helianthus annuus HOM05D007008 ORTHO05D008622 5.1e-43 177.6 100 84.0
CARHR202480 Cardamine hirsuta HOM05D007008 ORTHO05D008622 8.8e-43 176.8 100 82.0
arahy.Tifrunner.gnm1.ann1.K1H867 Arachis hypogaea HOM05D007008 ORTHO05D008622 1.1e-42 176.4 100 81.0
Glyma.06G060700 Glycine max HOM05D007008 ORTHO05D008622 2.0e-42 175.6 100 84.0
TAR383G0422 Trochodendron aralioides HOM05D007008 ORTHO05D008622 2.0e-42 175.6 101 80.2
Zm00001eb184500 Zea mays HOM05D007008 ORTHO05D008622 3.3e-42 174.9 102 80.4
AT5G10810 Arabidopsis thaliana HOM05D007008 ORTHO05D008622 5.7e-42 174.1 101 78.2
Aa31LG3G16290 Aethionema arabicum HOM05D007008 ORTHO05D008622 1.3e-41 172.9 101 76.2
Carub.0006s0932 Capsella rubella HOM05D007008 ORTHO05D008622 1.3e-41 172.9 100 77.0
Glyma.04G060200 Glycine max HOM05D007008 ORTHO05D008622 1.7e-41 172.6 99 82.8
GSVIVG01035984001 Vitis vinifera HOM05D007008 ORTHO05D008622 1.7e-41 172.6 92 87.0
AL6G21390 Arabidopsis lyrata HOM05D007008 ORTHO05D008622 2.8e-41 171.8 101 76.2
ECA240G3080 Erigeron canadensis HOM05D007008 ORTHO05D008622 3.7e-41 171.4 99 83.8
Thhalv10016011m.g Eutrema salsugineum HOM05D007008 ORTHO05D008622 3.7e-41 171.4 100 78.0
Cc11_g00350 Coffea canephora HOM05D007008 ORTHO05D008622 6.3e-41 170.6 92 89.1
BcaB08g37301 Brassica carinata HOM05D000238 ORTHO05D008622 1.4e-40 169.5 102 75.5
A02p00680 Brassica napus HOM05D000653 ORTHO05D002177 1.8e-40 169.1 99 76.8
C02p04680 Brassica napus HOM05D000653 ORTHO05D002177 1.8e-40 169.1 99 76.8
BolC2t06426H Brassica oleracea HOM05D000238 ORTHO05D001043 1.8e-40 169.1 99 76.8
BraA02t05052Z Brassica rapa HOM05D000238 ORTHO05D001043 1.8e-40 169.1 99 76.8
BraA10t44733Z Brassica rapa HOM05D000238 ORTHO05D002998 2.4e-40 168.7 102 75.5
PGR044G1005 Punica granatum HOM05D007008 ORTHO05D008622 3.1e-40 168.3 99 81.8
Lsat_1_v5_gn_5_62001 Lactuca sativa HOM05D007008 ORTHO05D008622 4.1e-40 167.9 91 87.9
Zm00001eb078360 Zea mays HOM05D007008 ORTHO05D008622 5.3e-40 167.5 102 73.5
BolC9t59417H Brassica oleracea HOM05D000238 ORTHO05D001043 9.1e-40 166.8 102 74.5
Medtr1g014230 Medicago truncatula HOM05D007008 ORTHO05D008622 9.1e-40 166.8 99 78.8
BcaNung06639 Brassica carinata HOM05D000653 ORTHO05D008622 1.2e-39 166.4 99 74.7
BcaC03g13334 Brassica carinata HOM05D000653 ORTHO05D002177 1.5e-39 166.0 99 75.8
Mapoly0112s0015 Marchantia polymorpha HOM05D007008 ORTHO05D008622 3.4e-39 164.9 102 74.5
C09p65940 Brassica napus HOM05D007008 ORTHO05D008622 4.5e-39 164.5 102 72.5
TPR.G38860 Trifolium pratense HOM05D007008 ORTHO05D008622 1.0e-38 163.3 99 75.8
AagrBONN_evm.TU.Sc2ySwM_344.3123 Anthoceros agrestis HOM05D007008 ORTHO05D008622 6.7e-35 150.6 102 70.6
CBR_g34568 Chara braunii HOM05D007008 ORTHO05D008622 2.0e-34 149.1 94 71.3
SMO367G1120 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 2.0e-34 149.1 100 66.0
Pp3c15_19100 Physcomitrium patens HOM05D007008 ORTHO05D008622 1.8e-32 142.5 100 65.0
Pp3c9_4080 Physcomitrium patens HOM05D007008 ORTHO05D008622 4.1e-32 141.4 98 65.3
CSS0004043 Camellia sinensis var. sinensis HOM05D007008 ORTHO05D008622 5.3e-32 141.0 73 93.2
MCO13G493 Micromonas commoda HOM05D007008 ORTHO05D008622 5.3e-32 141.0 101 57.4
MELO3C030305.2 Cucumis melo HOM05D007008 ORTHO05D008622 9.1e-32 140.2 73 91.8
COL.COLO4_18962 Corchorus olitorius HOM05D002170 ORTHO05D005003 5.9e-31 137.5 73 87.7
Gorai.010G119400 Gossypium raimondii HOM05D007008 ORTHO05D008622 7.7e-31 137.1 73 87.7
CiPaw.07G231200 Carya illinoinensis HOM05D007008 ORTHO05D008622 1.7e-30 136.0 69 91.3
AUR62032427 Chenopodium quinoa HOM05D007008 ORTHO05D008622 1.1e-29 133.3 71 88.7
Ah.12g060690 Amaranthus hybridus HOM05D007008 ORTHO05D008622 5.5e-29 131.0 71 87.3
SMO197G0113 Selaginella moellendorffii HOM05D007008 ORTHO05D008622 1.2e-28 129.8 101 52.5
Hund25613 Selenicereus undatus HOM05D007008 ORTHO05D008622 2.1e-28 129.0 72 86.1
HPP92_017465 Vanilla planifolia HOM05D007008 ORTHO05D008622 2.1e-28 129.0 74 79.7
arahy.Tifrunner.gnm1.ann1.T6XV8N Arachis hypogaea HOM05D007008 ORTHO05D008622 3.6e-28 128.3 80 72.5
PRCOL_00001314 Prasinoderma coloniale HOM05D007008 ORTHO05D008622 8.0e-28 127.1 101 55.4
Psat6g026400 Pisum sativum HOM05D007008 ORTHO05D008622 1.8e-27 125.9 72 80.6
Sp6g32640 Schrenkiella parvula HOM05D000653 ORTHO05D002177 1.8e-27 125.9 73 79.5
SEGI_13302 Sequoiadendron giganteum HOM05D007008 ORTHO05D008622 7.5e-26 120.6 69 79.7
Os04g0499200 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 1.7e-25 119.4 78 65.4
Thecc.02G190100 Theobroma cacao HOM05D007008 ORTHO05D008622 3.8e-22 108.2 103 58.3
Thecc.02G024500 Theobroma cacao HOM05D007008 ORTHO05D008622 5.5e-21 104.4 64 79.7
Thecc.01G194900 Theobroma cacao HOM05D007008 ORTHO05D008622 1.0e-19 100.1 64 79.7
Os02g0611450 Oryza sativa ssp. japonica HOM05D007008 ORTHO05D008622 5.5e-13 77.8 54 63.0
MBI15_g08395_MAGBIO Magnolia biondii HOM05D007008 ORTHO05D008622 3.7e-09 65.1 33 93.9
Thecc.10G152400 Theobroma cacao HOM05D007008 ORTHO05D008622 4.9e-09 64.7 40 75.0
CsaV3_2G032520 Cucumis sativus L. HOM05D000653 ORTHO05D002177 2.4e-08 62.4 33 87.9
Thecc.05G179000 Theobroma cacao HOM05D000477 ORTHO05D000338 4.1e-08 61.6 42 69.0
arahy.Tifrunner.gnm1.ann1.6H1017 Arachis hypogaea HOM05D007008 ORTHO05D008622 4.5e-07 58.2 31 87.1
A10p26800 Brassica napus HOM05D007008 ORTHO05D008622 2.3e-06 55.8 39 66.7
Atru.chr12.1662 Acer truncatum HOM05D000384 ORTHO05D000468 3.8e-06 55.1 33 78.8


User provided reference genes

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