Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G905.37 Capsicum annuum HOM05D006096 ORTHO05D007775 2.2e-221 771.9 382 100.0
PGSC0003DMG400016160 Solanum tuberosum HOM05D006096 ORTHO05D007775 5.6e-180 634.4 362 87.6
Sopen11g004830 Solanum pennellii HOM05D006096 ORTHO05D007775 8.3e-176 620.5 362 85.4
Peaxi162Scf00381g01013 Petunia axillaris HOM05D006096 ORTHO05D007775 3.5e-166 588.6 371 77.6
Cc07_g14840 Coffea canephora HOM05D006096 ORTHO05D007775 1.7e-128 463.4 375 65.3
Nitab4.5_0004570g0020 Nicotiana tabacum HOM05D006096 ORTHO05D007775 2.5e-127 459.5 326 72.7
Solyc11g009060.2 Solanum lycopersicum HOM05D006096 ORTHO05D007775 4.3e-124 448.7 261 85.4
CSS0046442 Camellia sinensis var. sinensis HOM05D006096 ORTHO05D007775 7.4e-124 448.0 372 62.6
Oeu033049.1 Olea europaea HOM05D006096 ORTHO05D007775 2.8e-123 446.0 359 64.1
vmacro18587 Vaccinium macrocarpon HOM05D006096 ORTHO05D007775 1.7e-120 436.8 361 63.2
TAR625G1553 Trochodendron aralioides HOM05D006096 ORTHO05D007775 7.2e-119 431.4 361 62.9
Gorai.011G113400 Gossypium raimondii HOM05D006096 ORTHO05D007775 1.2e-118 430.6 370 61.6
Gohir.A10G085100 Gossypium hirsutum HOM05D006096 ORTHO05D007775 1.4e-117 427.2 370 61.4
Duzib187G1253 Durio zibethinus HOM05D006096 ORTHO05D007775 1.8e-117 426.8 366 61.7
Atru.chr3.1373 Acer truncatum HOM05D006096 ORTHO05D007775 3.0e-117 426.0 369 62.3
RcHm_v2.0_Chr2g0112761 Rosa chinensis HOM05D006096 ORTHO05D007775 2.2e-115 419.9 367 59.9
Potri.005G073600 Populus trichocarpa HOM05D006096 ORTHO05D007775 6.3e-115 418.3 371 60.9
TWI53G1189 Tripterygium wilfordii HOM05D006096 ORTHO05D007775 1.2e-113 414.1 371 60.4
Eucgr.H04751 Eucalyptus grandis HOM05D006096 ORTHO05D007775 7.7e-113 411.4 371 59.3
Cpa.g.sc55.89 Carica papaya HOM05D006096 ORTHO05D007775 1.0e-112 411.0 364 60.2
FvH4_1g20510 Fragaria vesca HOM05D006096 ORTHO05D007775 2.9e-112 409.5 368 59.0
MBI02_g02177_MAGBIO Magnolia biondii HOM05D006096 ORTHO05D007775 1.5e-111 407.1 371 57.7
Nn1g05418 Nelumbo nucifera HOM05D006096 ORTHO05D007775 1.9e-111 406.8 370 57.3
Actinidia28854 Actinidia chinensis HOM05D006096 ORTHO05D007775 5.5e-111 405.2 366 60.4
Sc16g0000180 Simmondsia chinensis HOM05D006096 ORTHO05D007775 5.5e-111 405.2 365 58.6
CANSAT01G2346 Cannabis sativa HOM05D006096 ORTHO05D007775 1.6e-110 403.7 361 59.3
MD01G1033500 Malus domestica HOM05D006096 ORTHO05D007775 2.1e-110 403.3 360 58.9
Prupe.6G191000 Prunus persica HOM05D006096 ORTHO05D007775 2.1e-110 403.3 362 58.6
C09p67070 Brassica napus HOM05D006096 ORTHO05D007775 1.5e-108 397.1 364 55.2
BcaC04g19312 Brassica carinata HOM05D006096 ORTHO05D007775 3.3e-108 396.0 370 55.7
BolC9t59480H Brassica oleracea HOM05D006096 ORTHO05D007775 3.3e-108 396.0 368 55.4
Lsat_1_v5_gn_5_34320 Lactuca sativa HOM05D006096 ORTHO05D007775 3.3e-108 396.0 361 57.9
Migut.H02345 Erythranthe guttata HOM05D006096 ORTHO05D007775 4.4e-108 395.6 354 59.9
Glyma.18G015800 Glycine max HOM05D006096 ORTHO05D007775 5.7e-108 395.2 367 59.1
Psat5g090600 Pisum sativum HOM05D006096 ORTHO05D007775 2.2e-107 393.3 366 57.9
ECA246G2908 Erigeron canadensis HOM05D006096 ORTHO05D007775 2.8e-107 392.9 394 55.1
AT5G10320 Arabidopsis thaliana HOM05D006096 ORTHO05D007775 8.2e-107 391.3 368 55.7
Aqoxy6G00746 Aquilegia oxysepala HOM05D006096 ORTHO05D007775 1.8e-106 390.2 365 56.7
BraA10t44776Z Brassica rapa HOM05D006096 ORTHO05D007775 2.4e-106 389.8 368 55.2
Medtr3g087010 Medicago truncatula HOM05D006096 ORTHO05D007775 3.1e-106 389.4 366 57.4
TPR.G15994 Trifolium pratense HOM05D006096 ORTHO05D007775 5.3e-106 388.7 372 57.3
PSO210G0897 Papaver somniferum HOM05D006096 ORTHO05D007775 7.0e-106 388.3 352 57.4
BcaB08g37116 Brassica carinata HOM05D006096 ORTHO05D007775 1.2e-105 387.5 375 55.5
EL10Ac6g15136 Beta vulgaris HOM05D006096 ORTHO05D007775 1.6e-105 387.1 390 55.1
A10p27260 Brassica napus HOM05D006096 ORTHO05D007775 1.6e-105 387.1 372 54.0
Phvul.001G253200 Phaseolus vulgaris HOM05D006096 ORTHO05D007775 2.6e-105 386.3 366 57.1
Glyma.11G241200 Glycine max HOM05D006096 ORTHO05D007775 3.5e-105 386.0 367 58.3
AUR62001986 Chenopodium quinoa HOM05D006096 ORTHO05D007775 5.9e-105 385.2 406 53.0
VMungo1383G2853 Vigna mungo HOM05D006096 ORTHO05D007775 5.9e-105 385.2 366 56.3
Lj6g0005810 Lotus japonicus HOM05D006096 ORTHO05D007775 1.3e-104 384.0 352 57.4
AL6G20820 Arabidopsis lyrata HOM05D006096 ORTHO05D007775 2.9e-104 382.9 371 54.2
Sed0027583 Sechium edule HOM05D006096 ORTHO05D007775 3.8e-104 382.5 375 56.3
ATR0684G225 Amborella trichopoda HOM05D006096 ORTHO05D007775 1.2e-102 377.5 361 53.5
Lalb_Chr19g0127391 Lupinus albus HOM05D006096 ORTHO05D007775 1.6e-102 377.1 358 57.5
COL.COLO4_27275 Corchorus olitorius HOM05D006096 ORTHO05D007775 3.6e-102 375.9 345 60.9
Rhsim08G0012600 Rhododendron simsii HOM05D006096 ORTHO05D007775 1.3e-99 367.5 364 55.2
arahy.Tifrunner.gnm1.ann1.C4UPUA Arachis hypogaea HOM05D006096 ORTHO05D007775 2.8e-99 366.3 375 54.9
arahy.Tifrunner.gnm1.ann1.DD3ZZY Arachis hypogaea HOM05D006096 ORTHO05D007775 4.8e-99 365.5 402 52.0
Aa31LG3G16830 Aethionema arabicum HOM05D006096 ORTHO05D007775 7.0e-98 361.7 380 52.4
Hund13600 Selenicereus undatus HOM05D006096 ORTHO05D007775 1.2e-97 360.9 434 49.3
QL06p048476 Quercus lobata HOM05D006096 ORTHO05D007775 5.9e-97 358.6 329 59.0
Os04g0451100 Oryza sativa ssp. japonica HOM05D006096 ORTHO05D007775 3.2e-95 352.8 377 52.5
BcaC04g19315 Brassica carinata HOM05D006096 ORTHO05D007775 2.7e-94 349.7 306 59.8
Sabra05G0060100 Salix brachista HOM05D006096 ORTHO05D007775 2.3e-93 346.7 365 54.0
SGA_v2.0_scaffold111G31503 Striga asiatica HOM05D006096 ORTHO05D007775 2.3e-93 346.7 374 53.5
FAN23G0863 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.6e-92 343.2 368 51.4
Zm00001eb081250 Zea mays HOM05D006096 ORTHO05D007775 3.4e-92 342.8 285 62.8
CARHR202970 Cardamine hirsuta HOM05D006096 ORTHO05D007775 7.7e-89 331.6 293 57.3
ClCG07G017370 Citrullus lanatus HOM05D006096 ORTHO05D007775 7.7e-89 331.6 275 63.3
Nitab4.5_0000743g0130 Nicotiana tabacum HOM05D006096 ORTHO05D007775 7.7e-89 331.6 375 50.9
CARHR202960 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.8e-88 329.3 301 55.1
PSO447G0355 Papaver somniferum HOM05D006096 ORTHO05D007775 6.6e-88 328.6 356 50.6
Thhalv10013818m.g Eutrema salsugineum HOM05D006096 ORTHO05D007775 9.5e-87 324.7 377 49.3
SalBow3G4176 Salvia bowleyana HOM05D006096 ORTHO05D007775 2.1e-86 323.6 397 48.4
HPP92_011214 Vanilla planifolia HOM05D006096 ORTHO05D007775 1.2e-84 317.8 386 46.9
CsaV3_4G004600 Cucumis sativus L. HOM05D006096 ORTHO05D007775 7.0e-82 308.5 308 55.2
Dinv08841 Davidia involucrata HOM05D006096 ORTHO05D007775 7.0e-82 308.5 266 59.8
FAN19G2919 Fragaria x ananassa HOM05D006096 ORTHO05D007775 9.2e-82 308.1 370 48.9
unitig_899.g14550 Utricularia gibba HOM05D006096 ORTHO05D007775 1.7e-80 303.9 349 50.7
CsaV3_UNG122970 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.8e-77 293.9 332 51.2
Haze_24882 Corylus avellana HOM05D006096 ORTHO05D007775 5.2e-77 292.4 429 44.3
Pp3c26_3770 Physcomitrium patens HOM05D006096 ORTHO05D007775 4.4e-76 289.3 293 51.9
Ciclev10026196m.g Citrus clementina HOM05D006096 ORTHO05D007775 3.2e-74 283.1 270 55.9
Gohir.D10G103900 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.0e-74 282.0 271 56.5
AUR62003818 Chenopodium quinoa HOM05D006096 ORTHO05D007775 1.2e-73 281.2 276 55.8
Manes.13G095500 Manihot esculenta HOM05D006096 ORTHO05D007775 2.0e-73 280.4 281 54.1
Cfa002624 Carpinus fangiana HOM05D006096 ORTHO05D007775 1.7e-72 277.3 279 53.8
Thecc.01G097900 Theobroma cacao HOM05D006096 ORTHO05D007775 2.3e-72 276.9 271 56.1
Pp3c3_14090 Physcomitrium patens HOM05D006096 ORTHO05D007775 3.9e-72 276.2 261 53.6
CiPaw.03G143900 Carya illinoinensis HOM05D006096 ORTHO05D007775 2.5e-71 273.5 294 52.0
QL06p048506 Quercus lobata HOM05D006096 ORTHO05D007775 2.1e-70 270.4 300 50.3
Mapoly0077s0016 Marchantia polymorpha HOM05D006096 ORTHO05D007775 8.3e-67 258.5 322 45.0
Sp6g33110 Schrenkiella parvula HOM05D006096 ORTHO05D007775 2.4e-66 256.9 277 49.5
CBR_g26374 Chara braunii HOM05D006096 ORTHO05D007775 2.1e-65 253.8 337 43.3
HanXRQChr02g0032011 Helianthus annuus HOM05D006096 ORTHO05D007775 3.5e-65 253.1 273 52.0
DCAR_014211 Daucus carota HOM05D006096 ORTHO05D007775 5.6e-63 245.7 245 53.1
Haze_24873 Corylus avellana HOM05D006096 ORTHO05D007775 1.8e-61 240.7 402 41.0
FAN28G1526 Fragaria x ananassa HOM05D006096 ORTHO05D007775 2.9e-59 233.4 374 42.8
MELO3C017606.2 Cucumis melo HOM05D006096 ORTHO05D007775 1.2e-57 228.0 533 33.2
CsaV3_UNG160190 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.2e-57 228.0 157 71.3
HanXRQChr15g0477621 Helianthus annuus HOM05D006096 ORTHO05D007775 5.1e-56 222.6 295 46.1
Carub.0006s0879 Capsella rubella HOM05D006096 ORTHO05D007775 8.6e-56 221.9 256 48.0
CBR_g53530 Chara braunii HOM05D006096 ORTHO05D007775 1.7e-51 207.6 266 41.0
SMO301G0024 Selaginella moellendorffii HOM05D006096 ORTHO05D007775 1.9e-50 204.1 185 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1220 Anthoceros agrestis HOM05D006096 ORTHO05D007775 2.3e-48 197.2 277 43.7
Ca_16518_v3 Cicer arietinum L. HOM05D006096 ORTHO05D007775 7.6e-44 182.2 275 40.7
CARHR202980 Cardamine hirsuta HOM05D006096 ORTHO05D007775 3.9e-40 169.9 227 42.7
MSTRG.23356 Avicennia marina HOM05D006096 ORTHO05D007775 1.5e-39 167.9 247 42.9
CsaV3_UNG223570 Cucumis sativus L. HOM05D006096 ORTHO05D007775 1.6e-38 164.5 239 41.8
GSVIVG01006632001 Vitis vinifera HOM05D006096 ORTHO05D007775 7.6e-36 155.6 105 71.4
QL06p048511 Quercus lobata HOM05D006096 ORTHO05D007775 2.2e-35 154.1 99 77.8
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 1.4e-34 151.4 293 35.2
Cre17.g719050 Chlamydomonas reinhardtii HOM05D006096 ORTHO05D007775 4.3e-31 139.8 285 34.4
Carub.0006s0878 Capsella rubella HOM05D006096 ORTHO05D007775 7.1e-26 122.5 85 68.2
Gohir.D10G103800 Gossypium hirsutum HOM05D006096 ORTHO05D007775 7.1e-26 122.5 83 72.3
BcaB02g08416 Brassica carinata HOM05D006096 ORTHO05D007775 1.4e-21 108.2 78 67.9
SEGI_01830 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 1.3e-19 101.7 116 46.6
Cc03_g11790 Coffea canephora HOM05D006096 ORTHO05D007775 5.5e-18 96.3 86 58.1
HanXRQChr02g0032001 Helianthus annuus HOM05D006096 ORTHO05D007775 1.2e-17 95.1 69 69.6
Ah.02g123840 Amaranthus hybridus HOM05D006096 ORTHO05D007775 1.3e-16 91.7 67 67.2
Actinidia28243 Actinidia chinensis HOM05D006096 ORTHO05D009823 6.3e-14 82.8 253 31.6
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.1e-13 82.0 54 72.2
Nitab4.5_0004570g0030 Nicotiana tabacum HOM05D006096 ORTHO05D007775 1.0e-11 75.5 45 73.3
SEGI_02986 Sequoiadendron giganteum HOM05D006096 ORTHO05D007775 2.9e-11 73.9 61 57.4
CsaV3_UNG160180 Cucumis sativus L. HOM05D006096 ORTHO05D007775 6.7e-08 62.8 87 41.4


User provided reference genes

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