Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G905.36 Capsicum annuum HOM05D005154 ORTHO05D006270 7.9e-172 607.1 316 100.0
PGSC0003DMG400016159 Solanum tuberosum HOM05D005154 ORTHO05D006270 1.0e-131 473.8 319 81.5
Sopen11g004840 Solanum pennellii HOM05D005154 ORTHO05D006270 1.8e-131 473.0 319 80.9
Solyc11g009070.2 Solanum lycopersicum HOM05D005154 ORTHO05D006270 2.8e-129 465.7 314 80.6
Peaxi162Scf00381g00914 Petunia axillaris HOM05D005154 ORTHO05D006270 3.1e-115 419.1 317 73.8
Nitab4.5_0004570g0010 Nicotiana tabacum HOM05D005154 ORTHO05D006270 1.9e-112 409.8 312 72.1
Cc07_g14830 Coffea canephora HOM05D005154 ORTHO05D006270 6.7e-70 268.5 337 49.3
MSTRG.3768 Avicennia marina HOM05D005154 ORTHO05D006270 4.3e-69 265.8 325 52.6
Dinv13215 Davidia involucrata HOM05D005154 ORTHO05D006270 8.1e-68 261.5 336 51.5
CSS0008069 Camellia sinensis var. sinensis HOM05D005154 ORTHO05D006270 5.3e-67 258.8 332 50.6
Thecc.01G097800 Theobroma cacao HOM05D005154 ORTHO05D006270 7.1e-64 248.4 328 50.6
COL.COLO4_27276 Corchorus olitorius HOM05D005154 ORTHO05D006270 7.9e-63 245.0 328 48.8
Eucgr.I00513 Eucalyptus grandis HOM05D005154 ORTHO05D006270 5.1e-62 242.3 291 50.9
Lsat_1_v5_gn_2_66460 Lactuca sativa HOM05D005154 ORTHO05D006270 8.7e-62 241.5 300 52.3
MSTRG.2575 Avicennia marina HOM05D005154 ORTHO05D006270 1.1e-59 234.6 237 55.7
Ciclev10026087m.g Citrus clementina HOM05D005154 ORTHO05D006270 1.1e-59 234.6 331 48.6
Cfa002623 Carpinus fangiana HOM05D005154 ORTHO05D006270 3.1e-59 233.0 319 48.9
Gorai.003G040700 Gossypium raimondii HOM05D005154 ORTHO05D006270 9.0e-59 231.5 324 47.5
HanXRQChr14g0445521 Helianthus annuus HOM05D005154 ORTHO05D006270 9.0e-59 231.5 292 50.7
Atru.chr3.1372 Acer truncatum HOM05D005154 ORTHO05D006270 1.5e-58 230.7 331 50.2
Manes.12G131800 Manihot esculenta HOM05D005154 ORTHO05D006270 1.5e-58 230.7 335 46.6
Actinidia28853 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.4e-58 229.6 281 50.5
Duzib187G0267 Durio zibethinus HOM05D005154 ORTHO05D006270 4.5e-58 229.2 324 47.5
Gohir.A02G128100 Gossypium hirsutum HOM05D005154 ORTHO05D006270 5.8e-58 228.8 324 48.1
Oeu001799.2 Olea europaea HOM05D005154 ORTHO05D006270 2.2e-57 226.9 384 42.4
vmacro18586 Vaccinium macrocarpon HOM05D005154 ORTHO05D006270 2.2e-57 226.9 323 45.2
TAR362G0353 Trochodendron aralioides HOM05D005154 ORTHO05D006270 3.8e-57 226.1 314 50.3
Hma1.2p1_0019F.1_g013610 Hydrangea macrophylla HOM05D005154 ORTHO05D006270 1.1e-56 224.6 301 48.8
Haze_24881 Corylus avellana HOM05D005154 ORTHO05D006270 1.9e-56 223.8 319 48.3
SGA_v2.0_scaffold335G49113 Striga asiatica HOM05D005154 ORTHO05D006270 1.9e-56 223.8 304 49.7
Haze_24872 Corylus avellana HOM05D005154 ORTHO05D006270 2.5e-56 223.4 319 48.3
Duzib147G1408 Durio zibethinus HOM05D005154 ORTHO05D006270 2.5e-56 223.4 304 49.7
Rhsim08G0012700 Rhododendron simsii HOM05D005154 ORTHO05D006270 3.2e-56 223.0 261 52.1
TAR633G1456 Trochodendron aralioides HOM05D005154 ORTHO05D006270 4.2e-56 222.6 289 50.9
Oeu032406.1 Olea europaea HOM05D005154 ORTHO05D006270 7.1e-56 221.9 392 40.3
QL06p048470 Quercus lobata HOM05D005154 ORTHO05D006270 7.1e-56 221.9 315 48.9
Potri.007G095600 Populus trichocarpa HOM05D005154 ORTHO05D006270 1.6e-55 220.7 275 50.9
PGR004G1180 Punica granatum HOM05D005154 ORTHO05D006270 2.1e-55 220.3 248 56.0
SGA_v2.0_scaffold111G31501 Striga asiatica HOM05D005154 ORTHO05D006270 2.1e-55 220.3 325 46.2
Sabra05G0060000 Salix brachista HOM05D005154 ORTHO05D006270 2.7e-55 219.9 323 47.1
Potri.005G073500 Populus trichocarpa HOM05D005154 ORTHO05D006270 6.1e-55 218.8 274 51.5
Nn5g28615 Nelumbo nucifera HOM05D005154 ORTHO05D006270 1.8e-54 217.2 266 50.8
Actinidia20002 Actinidia chinensis HOM05D005154 ORTHO05D006270 3.0e-54 216.5 248 51.6
AUR62001985 Chenopodium quinoa HOM05D005154 ORTHO05D006270 1.1e-53 214.5 337 45.7
TWI77G0548 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 1.9e-53 213.8 293 47.8
Glyma.05G176600 Glycine max HOM05D005154 ORTHO05D006270 4.3e-53 212.6 221 59.3
MD00G1037300 Malus domestica HOM05D005154 ORTHO05D006270 9.7e-53 211.5 251 54.2
SalBow3G4482 Salvia bowleyana HOM05D005154 ORTHO05D006270 9.7e-53 211.5 255 51.8
SalBow3G3886 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.3e-52 211.1 255 51.8
Sabra07G0078700 Salix brachista HOM05D005154 ORTHO05D006270 1.6e-52 210.7 264 51.5
Nn1g06223 Nelumbo nucifera HOM05D005154 ORTHO05D006270 2.2e-52 210.3 223 54.7
RcHm_v2.0_Chr2g0112751 Rosa chinensis HOM05D005154 ORTHO05D006270 2.8e-52 209.9 263 51.0
EL10Ac6g15137 Beta vulgaris HOM05D005154 ORTHO05D006270 3.7e-52 209.5 328 44.5
Migut.L00147 Erythranthe guttata HOM05D005154 ORTHO05D006270 3.7e-52 209.5 214 57.9
VMungo0251G0355 Vigna mungo HOM05D005154 ORTHO05D006270 3.7e-52 209.5 213 60.1
CiPaw.03G144000 Carya illinoinensis HOM05D005154 ORTHO05D006270 8.2e-52 208.4 319 47.6
SalBow5G0552 Salvia bowleyana HOM05D005154 ORTHO05D006270 1.1e-51 208.0 306 46.7
TPR.G6195 Trifolium pratense HOM05D005154 ORTHO05D006270 5.3e-51 205.7 270 50.7
arahy.Tifrunner.gnm1.ann1.LGH16T Arachis hypogaea HOM05D005154 ORTHO05D006270 6.9e-51 205.3 254 53.5
C03p60830 Brassica napus HOM05D005154 ORTHO05D006270 6.9e-51 205.3 260 47.7
CARHR279200 Cardamine hirsuta HOM05D005154 ORTHO05D006270 9.0e-51 204.9 213 58.2
Migut.H02344 Erythranthe guttata HOM05D005154 ORTHO05D006270 9.0e-51 204.9 242 52.9
TWI53G2081 Tripterygium wilfordii HOM05D005154 ORTHO05D006270 9.0e-51 204.9 229 55.0
A06p32100 Brassica napus HOM05D005154 ORTHO05D006270 1.2e-50 204.5 267 47.6
BraA06t26139Z Brassica rapa HOM05D005154 ORTHO05D006270 1.2e-50 204.5 267 47.6
BolC3t18339H Brassica oleracea HOM05D002046 ORTHO05D002180 1.5e-50 204.1 260 47.7
Sp2g28350 Schrenkiella parvula HOM05D005154 ORTHO05D006270 1.5e-50 204.1 234 52.6
BcaC01g02761 Brassica carinata HOM05D005154 ORTHO05D006270 3.4e-50 203.0 260 47.3
Ca_17754_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 4.5e-50 202.6 201 58.7
FAN28G0994 Fragaria x ananassa HOM05D005154 ORTHO05D006270 5.9e-50 202.2 287 48.4
arahy.Tifrunner.gnm1.ann1.0B7H6P Arachis hypogaea HOM05D005154 ORTHO05D006270 7.7e-50 201.8 254 52.8
Phvul.002G257700 Phaseolus vulgaris HOM05D005154 ORTHO05D006270 1.3e-49 201.1 247 51.8
AL8G42810 Arabidopsis lyrata HOM05D005154 ORTHO05D006270 2.2e-49 200.3 206 56.8
Carub.0008s2612 Capsella rubella HOM05D005154 ORTHO05D006270 2.2e-49 200.3 208 57.2
ECA238G2162 Erigeron canadensis HOM05D005154 ORTHO05D001925 2.9e-49 199.9 163 66.3
FvH4_1g20490 Fragaria vesca HOM05D005154 ORTHO05D006270 2.9e-49 199.9 228 55.3
FAN23G2516 Fragaria x ananassa HOM05D005154 ORTHO05D006270 2.9e-49 199.9 228 55.3
Hund13599 Selenicereus undatus HOM05D005154 ORTHO05D006270 2.9e-49 199.9 333 44.4
Lj4g0010322 Lotus japonicus HOM05D005154 ORTHO05D006270 6.5e-49 198.7 215 56.7
Medtr8g089995 Medicago truncatula HOM05D005154 ORTHO05D006270 8.5e-49 198.4 215 56.3
BolC2t12462H Brassica oleracea HOM05D005154 ORTHO05D006270 1.1e-48 198.0 262 47.7
Gohir.D03G039500 Gossypium hirsutum HOM05D005154 ORTHO05D006270 1.1e-48 198.0 187 63.6
Lalb_Chr07g0185271 Lupinus albus HOM05D005154 ORTHO05D006270 1.1e-48 198.0 217 56.7
Thhalv10004756m.g Eutrema salsugineum HOM05D005154 ORTHO05D006270 1.4e-48 197.6 191 60.2
Aa31LG1G16710 Aethionema arabicum HOM05D005154 ORTHO05D006270 1.9e-48 197.2 235 52.3
MBI02_g02178_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 1.9e-48 197.2 285 47.0
A02p43800 Brassica napus HOM05D005154 ORTHO05D006270 7.2e-48 195.3 264 48.5
BraA02t09304Z Brassica rapa HOM05D005154 ORTHO05D006270 7.2e-48 195.3 264 48.5
CDE05G0874 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 9.4e-48 194.9 334 44.9
FAN19G2087 Fragaria x ananassa HOM05D005154 ORTHO05D006270 1.6e-47 194.1 238 53.4
MELO3C007745.2 Cucumis melo HOM05D005154 ORTHO05D006270 3.6e-47 193.0 199 56.8
PSO210G3532 Papaver somniferum HOM05D005154 ORTHO05D006270 4.6e-47 192.6 305 47.5
PSO447G0271 Papaver somniferum HOM05D005154 ORTHO05D006270 4.6e-47 192.6 305 46.6
Cpa.g.sc55.88 Carica papaya HOM05D005154 ORTHO05D006270 2.3e-46 190.3 166 66.9
CsaV3_6G045320 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.0e-46 189.9 290 43.8
Prupe.6G191100 Prunus persica HOM05D005154 ORTHO05D006270 3.9e-46 189.5 262 48.1
THA.LOC104798878 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 8.8e-46 188.3 192 57.8
Aqoxy6G00745 Aquilegia oxysepala HOM05D005154 ORTHO05D006270 4.3e-45 186.0 241 49.4
Lj4A897G79 Lonicera japonica HOM05D005154 ORTHO05D006270 2.8e-44 183.3 152 67.1
Sed0021389 Sechium edule HOM05D005154 ORTHO05D006270 6.3e-44 182.2 196 56.1
Sed0002157 Sechium edule HOM05D005154 ORTHO05D006270 1.4e-43 181.0 293 44.4
unitig_899.g14551 Utricularia gibba HOM05D005154 ORTHO05D006270 1.8e-43 180.6 264 45.1
C02p63960 Brassica napus HOM05D005154 ORTHO05D006270 2.4e-43 180.3 280 44.3
Ca_16517_v3 Cicer arietinum L. HOM05D005154 ORTHO05D006270 3.1e-43 179.9 231 51.5
THA.LOC104807680 Tarenaya hassleriana HOM05D005154 ORTHO05D006270 1.2e-42 177.9 266 45.5
AT5G65250 Arabidopsis thaliana HOM05D005154 ORTHO05D006270 2.2e-41 173.7 212 50.9
MELO3C017601.2 Cucumis melo HOM05D005154 ORTHO05D006270 2.2e-41 173.7 230 50.4
Medtr3g086990 Medicago truncatula HOM05D005154 ORTHO05D006270 2.2e-41 173.7 257 46.3
ClCG07G017400 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.8e-41 172.9 319 42.6
Glyma.08G134000 Glycine max HOM05D005154 ORTHO05D006270 5.0e-41 172.6 176 60.2
Sc03g0000070 Simmondsia chinensis HOM05D005154 ORTHO05D006270 1.1e-40 171.4 309 40.8
ATR1133G017 Amborella trichopoda HOM05D005154 ORTHO05D006270 2.5e-40 170.2 161 60.9
AUR62003820 Chenopodium quinoa HOM05D005154 ORTHO05D006270 2.5e-40 170.2 163 61.3
MBI02_g27971_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 2.7e-39 166.8 309 43.4
Os08g0484800 Oryza sativa ssp. japonica HOM05D005154 ORTHO05D006270 1.4e-38 164.5 177 54.2
unitig_748.g8652 Utricularia gibba HOM05D005154 ORTHO05D006270 2.3e-38 163.7 270 41.9
GSVIVG01006633001 Vitis vinifera HOM05D005154 ORTHO05D006270 3.0e-38 163.3 142 66.2
DCAR_014210 Daucus carota HOM05D005154 ORTHO05D006270 1.1e-37 161.4 166 54.2
BcaB07g34227 Brassica carinata HOM05D005154 ORTHO05D006270 3.3e-37 159.8 108 79.6
ClCG01G018660 Citrullus lanatus HOM05D005154 ORTHO05D006270 3.1e-35 153.3 284 39.8
Psat5g090640 Pisum sativum HOM05D005154 ORTHO05D006270 3.1e-35 153.3 214 47.2
Sed0027637 Sechium edule HOM05D005154 ORTHO05D006270 3.1e-35 153.3 199 46.7
HPP92_016780 Vanilla planifolia HOM05D005154 ORTHO05D006270 7.0e-35 152.1 141 62.4
SEGI_40329 Sequoiadendron giganteum HOM05D005154 ORTHO05D006270 1.5e-34 151.0 237 41.8
Lj2C542T5 Lonicera japonica HOM05D005154 ORTHO05D006270 1.5e-32 144.4 222 46.4
PGR102G1872 Punica granatum HOM05D005154 ORTHO05D006270 1.8e-30 137.5 110 71.8
Psat7g056800 Pisum sativum HOM05D005154 ORTHO05D006270 6.7e-30 135.6 147 55.8
CsaV3_UNG158170 Cucumis sativus L. HOM05D001364 ORTHO05D006270 3.3e-29 133.3 192 49.5
BcaNung07054 Brassica carinata HOM05D005154 ORTHO05D006270 1.4e-27 127.9 86 80.2
CDE05G3641 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.7e-25 120.9 225 40.4
CiPaw.04G102700 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.1e-24 118.2 258 38.8
MD01G1033600 Malus domestica HOM05D005154 ORTHO05D006270 1.5e-24 117.9 136 58.1
Nitab4.5_0000743g0090 Nicotiana tabacum HOM05D005154 ORTHO05D006270 5.5e-24 115.9 114 59.6
CsaV3_4G004630 Cucumis sativus L. HOM05D005154 ORTHO05D006270 2.7e-23 113.6 107 63.6
CDE03G0147 Ceratophyllum demersum HOM05D005154 ORTHO05D006270 1.7e-20 104.4 103 55.3
Lj2C542T6 Lonicera japonica HOM05D005154 ORTHO05D006270 1.1e-19 101.7 102 58.8
CBR_g50776 Chara braunii HOM05D002289 ORTHO05D004369 7.7e-18 95.5 121 44.6
Pp3c10_24690 Physcomitrium patens HOM05D005154 ORTHO05D006270 1.7e-17 94.4 145 40.7
CsaV3_UNG129000 Cucumis sativus L. HOM05D005154 ORTHO05D006270 6.5e-17 92.4 90 62.2
CiPaw.11G071200 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.5e-16 91.3 61 82.0
Mapoly0112s0020 Marchantia polymorpha HOM05D005154 ORTHO05D006270 3.2e-16 90.1 99 53.5
SMO171G0129 Selaginella moellendorffii HOM05D005154 ORTHO05D006270 1.6e-15 87.8 119 44.5
AagrBONN_evm.TU.Sc2ySwM_344.1569 Anthoceros agrestis HOM05D005154 ORTHO05D006270 5.2e-14 82.8 147 37.4
CsaV3_UNG223540 Cucumis sativus L. HOM05D005154 ORTHO05D006270 3.4e-13 80.1 105 54.3
Actinidia28244 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.2e-10 71.6 111 47.7
CiPaw.02G062100 Carya illinoinensis HOM05D005154 ORTHO05D006270 1.2e-10 71.6 46 84.8
MBI02_g48054_MAGBIO Magnolia biondii HOM05D005154 ORTHO05D006270 4.5e-10 69.7 49 79.6
Actinidia30832 Actinidia chinensis HOM05D005154 ORTHO05D006270 1.6e-07 61.2 225 30.2
CDE06G0254 Ceratophyllum demersum HOM05D006096 ORTHO05D007775 2.1e-07 60.8 179 26.8


User provided reference genes

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