Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.7e-302 1042.0 558 100.0
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 1.8e-235 819.3 541 84.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 2.4e-232 808.9 543 83.8
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 8.3e-225 783.9 626 73.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 2.0e-218 762.7 532 77.1
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 3.4e-202 708.8 555 71.2
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 1.3e-145 520.8 550 55.8
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 5.7e-141 505.4 542 55.4
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 1.8e-139 500.4 579 52.8
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.2e-135 487.6 552 54.3
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 3.0e-134 483.0 533 54.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 1.2e-130 471.1 594 50.0
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.3e-129 466.8 536 53.7
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 6.6e-129 465.3 545 53.6
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 9.5e-128 461.5 543 53.0
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 3.6e-127 459.5 525 54.3
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.2e-126 455.7 544 50.0
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 6.8e-126 455.3 540 53.5
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 6.8e-126 455.3 549 51.4
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.7e-124 450.7 549 53.2
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.9e-124 449.9 553 52.3
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 4.9e-124 449.1 533 50.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.3e-124 448.7 548 54.0
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 9.2e-123 444.9 570 51.6
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.0e-121 441.4 550 51.3
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 1.7e-121 440.7 550 51.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 1.7e-121 440.7 549 50.5
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 5.0e-121 439.1 527 51.2
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 8.6e-121 438.3 549 51.5
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 1.1e-120 438.0 574 47.2
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 1.5e-120 437.6 557 51.2
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-120 436.4 559 50.4
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.3e-120 436.0 539 52.3
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 1.2e-119 434.5 547 53.0
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 1.4e-118 431.0 531 50.8
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 1.2e-117 427.9 540 50.6
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 9.8e-117 424.9 576 49.0
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.9e-116 422.5 561 49.4
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 6.4e-116 422.2 547 51.0
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 6.4e-116 422.2 566 50.4
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 6.4e-116 422.2 540 52.6
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 3.2e-115 419.9 558 48.6
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 9.2e-115 418.3 546 49.3
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 3.5e-114 416.4 548 51.3
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 7.8e-114 415.2 574 47.9
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 3.9e-113 412.9 550 49.5
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.5e-112 411.0 562 48.8
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 1.5e-112 411.0 536 49.6
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 1.6e-111 407.5 552 47.3
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 3.4e-109 399.8 576 46.4
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 5.8e-109 399.1 591 47.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 4.9e-108 396.0 542 48.5
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 2.4e-107 393.7 558 47.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 9.2e-107 391.7 544 47.6
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 1.2e-106 391.3 531 48.4
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 6.0e-106 389.0 578 45.2
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.7e-105 387.5 542 47.0
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 3.9e-105 386.3 555 47.2
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 6.6e-105 385.6 530 47.7
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 4.3e-104 382.9 548 47.1
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 1.6e-103 380.9 549 46.3
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 5.2e-102 375.9 487 51.3
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 8.9e-102 375.2 601 45.9
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 5.8e-101 372.5 567 45.3
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 1.3e-100 371.3 560 45.2
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 2.9e-100 370.2 553 45.4
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 1.9e-99 367.5 556 45.5
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 2.1e-98 364.0 547 47.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.0e-97 361.7 553 45.8
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 6.6e-97 359.0 528 43.9
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 1.9e-96 357.5 506 48.2
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 5.6e-96 355.9 544 46.0
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 4.7e-95 352.8 551 45.6
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 6.2e-95 352.4 536 44.8
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 4.0e-94 349.7 545 44.2
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 8.9e-94 348.6 542 44.8
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.0e-93 347.4 578 45.2
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 5.8e-93 345.9 544 42.6
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.9e-91 340.9 537 44.5
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 7.1e-91 339.0 533 44.7
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 9.3e-91 338.6 581 43.4
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.1e-90 337.4 549 43.7
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 6.0e-90 335.9 460 49.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 1.7e-89 334.3 556 41.0
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.9e-88 330.9 533 43.7
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-88 330.1 463 47.3
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 1.6e-87 327.8 546 42.5
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 1.6e-87 327.8 535 44.3
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 4.8e-87 326.2 535 44.3
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.4e-86 324.7 337 54.6
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 3.8e-84 316.6 533 42.6
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 5.4e-83 312.8 539 41.6
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 7.1e-83 312.4 528 40.5
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.7e-82 310.5 546 41.8
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 2.5e-80 303.9 542 40.8
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.4e-78 297.4 491 44.0
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 9.0e-78 295.4 564 38.7
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 3.8e-76 290.0 481 42.6
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 4.9e-76 289.7 553 41.2
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 6.4e-76 289.3 548 41.4
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 2.4e-75 287.3 474 44.5
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 3.2e-75 287.0 585 38.8
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 6.0e-74 282.7 541 38.8
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 7.9e-74 282.3 306 52.6
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 7.4e-72 275.8 534 39.1
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 3.7e-71 273.5 493 41.4
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 3.7e-71 273.5 493 41.4
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.0e-70 270.0 294 53.1
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.1e-59 235.3 285 48.4
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 5.1e-57 226.5 484 36.8
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 1.2e-50 205.3 385 42.3
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 1.3e-47 195.3 410 36.8
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 1.7e-47 194.9 456 38.6
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.2e-47 194.5 456 39.0
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 8.2e-47 192.6 324 40.1
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 8.5e-44 182.6 561 28.9
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 8.8e-41 172.6 381 37.8
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 1.7e-39 168.3 575 28.9
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 1.3e-36 158.7 530 27.7
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 2.9e-36 157.5 246 39.8
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 2.9e-28 131.0 268 41.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 3.8e-28 130.6 182 38.5
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 8.3e-23 112.8 120 57.5
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 3.5e-21 107.5 213 35.7
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 4.2e-19 100.5 247 32.4
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 5.5e-19 100.1 127 52.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 9.4e-19 99.4 100 59.0
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 3.4e-16 90.9 212 35.4
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 2.8e-15 87.8 125 33.6
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 2.4e-14 84.7 206 32.0
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 2.7e-13 81.3 188 33.0
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.0e-12 79.3 68 52.9
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 2.5e-11 74.7 143 36.4
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 4.3e-11 73.9 99 44.4
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 4.7e-10 70.5 239 25.5
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 4.7e-10 70.5 95 43.2
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 5.7e-08 63.5 37 78.4
DCAR_032089 Daucus carota HOM05D002452 ORTHO05D006766 8.3e-07 59.7 58 62.1


User provided reference genes

Program Settings