Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 4.7e-175 617.8 331 100.0
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 2.2e-76 290.0 285 61.1
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-65 254.6 253 62.5
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 2.5e-35 153.7 246 45.1
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 2.3e-33 147.1 170 57.1
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 6.8e-33 145.6 100 77.0
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 6.8e-33 145.6 246 44.3
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 2.0e-32 144.1 229 45.4
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 3.4e-32 143.3 246 44.3
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 7.5e-32 142.1 229 45.0
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.4e-30 137.9 246 41.9
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 9.2e-30 135.2 245 41.2
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 5.6e-27 125.9 234 38.9
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 5.2e-25 119.4 237 37.6
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 3.4e-24 116.7 240 36.7
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 4.4e-24 116.3 221 38.0
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 4.4e-24 116.3 231 35.9
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 5.8e-24 115.9 221 37.6
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 7.6e-24 115.5 248 37.1
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 7.6e-24 115.5 240 36.7
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 9.9e-24 115.2 223 38.1
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 9.9e-24 115.2 231 36.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 1.3e-23 114.8 243 35.0
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 1.3e-23 114.8 221 37.1
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 1.3e-23 114.8 223 37.7
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 1.3e-23 114.8 228 36.8
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 1.7e-23 114.4 245 35.5
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 1.7e-23 114.4 229 37.1
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 2.2e-23 114.0 225 36.4
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 2.9e-23 113.6 229 37.1
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 3.8e-23 113.2 223 37.7
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 4.9e-23 112.8 225 36.0
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 4.9e-23 112.8 225 36.0
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 4.9e-23 112.8 228 36.8
Sopen02g005760 Solanum pennellii HOM05D000017 ORTHO05D000013 4.9e-23 112.8 143 44.1
Sopen03g035430 Solanum pennellii HOM05D000017 ORTHO05D000013 4.9e-23 112.8 143 44.1
Sopen04g025960 Solanum pennellii HOM05D000017 ORTHO05D000013 4.9e-23 112.8 143 44.1
Sopen08g018320 Solanum pennellii HOM05D000017 ORTHO05D000013 4.9e-23 112.8 143 44.1
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 4.9e-23 112.8 241 37.3
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 4.9e-23 112.8 228 36.4
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 6.4e-23 112.5 223 36.8
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 8.4e-23 112.1 246 35.0
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 1.4e-22 111.3 248 35.1
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 1.4e-22 111.3 231 37.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 1.4e-22 111.3 231 37.2
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 1.9e-22 110.9 256 36.3
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 1.9e-22 110.9 242 36.4
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.4e-22 110.5 248 34.3
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 2.4e-22 110.5 247 35.6
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.4e-22 110.5 247 35.6
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.4e-22 110.5 247 35.6
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 2.4e-22 110.5 247 35.6
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 2.4e-22 110.5 230 36.5
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 2.4e-22 110.5 247 35.6
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 2.4e-22 110.5 241 34.9
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 3.2e-22 110.2 227 35.7
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 3.2e-22 110.2 230 36.5
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 3.2e-22 110.2 230 37.0
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 3.2e-22 110.2 249 35.7
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 3.2e-22 110.2 227 35.7
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 4.1e-22 109.8 225 35.1
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 4.1e-22 109.8 225 35.1
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 4.1e-22 109.8 225 35.1
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 4.1e-22 109.8 230 36.1
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 5.4e-22 109.4 230 35.2
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 7.1e-22 109.0 227 35.2
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 7.1e-22 109.0 227 36.6
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 9.2e-22 108.6 228 36.8
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 9.2e-22 108.6 279 33.7
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 1.2e-21 108.2 248 34.7
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 1.2e-21 108.2 228 36.4
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 1.2e-21 108.2 247 36.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 1.2e-21 108.2 243 37.0
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 1.6e-21 107.8 227 35.2
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 1.6e-21 107.8 228 36.4
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 1.6e-21 107.8 247 34.8
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 2.1e-21 107.5 245 34.3
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 2.1e-21 107.5 227 35.7
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 2.7e-21 107.1 227 34.8
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 4.6e-21 106.3 245 33.9
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 4.6e-21 106.3 228 36.4
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 6.0e-21 105.9 228 34.6
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 7.8e-21 105.5 228 35.1
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 1.7e-20 104.4 249 34.1
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 3.0e-20 103.6 245 33.5
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 3.9e-20 103.2 264 33.0
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 3.9e-20 103.2 249 33.7
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 6.6e-20 102.4 228 34.6
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 6.6e-20 102.4 245 33.5
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 6.6e-20 102.4 228 35.1
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 1.1e-19 101.7 247 32.8
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 1.1e-19 101.7 270 32.6
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 1.1e-19 101.7 247 35.6
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 1.1e-19 101.7 240 33.3
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 1.5e-19 101.3 245 33.9
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 1.9e-19 100.9 270 31.9
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 5.6e-19 99.4 249 34.5
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 9.6e-19 98.6 228 34.2
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 1.2e-18 98.2 231 34.2
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 2.1e-18 97.4 245 33.1
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 2.8e-18 97.1 228 34.2
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 3.6e-18 96.7 228 33.8
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 1.1e-17 95.1 226 34.5
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 1.8e-17 94.4 230 32.2
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 2.4e-17 94.0 363 29.2
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 4.0e-17 93.2 232 32.8
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 9.9e-16 88.6 233 32.2
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 9.9e-16 88.6 235 32.3
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 1.3e-15 88.2 234 32.5
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 4.9e-15 86.3 243 34.2
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 6.4e-15 85.9 220 31.8
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 6.4e-15 85.9 223 31.4
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 1.1e-14 85.1 81 58.0
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 2.4e-14 84.0 75 62.7
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 4.2e-14 83.2 117 47.9
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 9.3e-14 82.0 75 60.0
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 1.2e-13 81.6 75 60.0
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 1.6e-13 81.3 59 72.9
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 1.7e-12 77.8 64 62.5
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.3e-12 77.4 109 46.8
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 6.6e-12 75.9 68 57.4
Sopen04g018620 Solanum pennellii HOM05D000017 ORTHO05D000013 8.7e-12 75.5 84 51.2
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 3.6e-10 70.1 64 57.8
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 6.2e-10 69.3 64 62.5
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 1.1e-09 68.6 132 37.1
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 1.5e-08 64.7 76 48.7
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 3.4e-08 63.5 63 49.2
Solyc02g030247.1 Solanum lycopersicum HOM05D000176 ORTHO05D000106 4.5e-08 63.2 93 41.9
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 7.6e-08 62.4 155 31.0
CAN.G407.125 Capsicum annuum HOM05D000017 ORTHO05D000013 9.9e-08 62.0 146 32.2
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.7e-07 61.2 101 40.6
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.7e-07 61.2 81 42.0


User provided reference genes

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