Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G902.1 Capsicum annuum HOM05D003547 ORTHO05D004236 3.1e-69 265.0 132 100.0
Nitab4.5_0002234g0080 Nicotiana tabacum HOM05D003547 ORTHO05D004236 3.3e-39 165.2 96 85.4
PGSC0003DMG400022761 Solanum tuberosum HOM05D003547 ORTHO05D004236 2.8e-38 162.2 96 83.3
Solyc08g080340.3 Solanum lycopersicum HOM05D003547 ORTHO05D004236 3.7e-38 161.8 96 83.3
Sopen08g028680 Solanum pennellii HOM05D003547 ORTHO05D004236 3.7e-38 161.8 96 83.3
Peaxi162Scf00714g00618 Petunia axillaris HOM05D003547 ORTHO05D004236 7.6e-36 154.1 96 79.2
CAN.G981.33 Capsicum annuum HOM05D003547 ORTHO05D004236 2.2e-35 152.5 96 83.3
Nitab4.5_0002853g0090 Nicotiana tabacum HOM05D003547 ORTHO05D004236 2.5e-34 149.1 90 84.4
Cc08_g14010 Coffea canephora HOM05D003547 ORTHO05D004236 7.2e-34 147.5 96 77.1
Solyc12g056420.2 Solanum lycopersicum HOM05D003547 ORTHO05D004236 1.6e-33 146.4 96 76.0
Sopen12g029010 Solanum pennellii HOM05D003547 ORTHO05D004236 1.6e-33 146.4 96 76.0
PGSC0003DMG400004256 Solanum tuberosum HOM05D003547 ORTHO05D004236 1.6e-33 146.4 96 76.0
PGSC0003DMG400012528 Solanum tuberosum HOM05D003547 ORTHO05D004236 2.1e-33 146.0 96 76.0
MSTRG.1894 Avicennia marina HOM05D003547 ORTHO05D004236 7.9e-33 144.1 97 75.3
PSO782G0307 Papaver somniferum HOM05D003547 ORTHO05D004236 1.3e-32 143.3 96 74.0
SalBow6G6756 Salvia bowleyana HOM05D003547 ORTHO05D004236 2.3e-32 142.5 97 75.3
Nitab4.5_0002886g0010 Nicotiana tabacum HOM05D003547 ORTHO05D004236 3.0e-32 142.1 96 72.9
Oeu062362.1 Olea europaea HOM05D003547 ORTHO05D004236 3.0e-32 142.1 97 75.3
Solyc08g007860.4 Solanum lycopersicum HOM05D003547 ORTHO05D004236 3.0e-32 142.1 96 74.0
Sopen08g003790 Solanum pennellii HOM05D003547 ORTHO05D004236 3.0e-32 142.1 96 74.0
SGA_v2.0_scaffold286G47093 Striga asiatica HOM05D003547 ORTHO05D004236 3.0e-32 142.1 97 73.2
SGA_v2.0_scaffold343G49466 Striga asiatica HOM05D003547 ORTHO05D004236 3.0e-32 142.1 97 73.2
Migut.A00924 Erythranthe guttata HOM05D003547 ORTHO05D004236 3.9e-32 141.7 97 75.3
Peaxi162Scf00102g01431 Petunia axillaris HOM05D003547 ORTHO05D004236 3.9e-32 141.7 96 74.0
CAN.G26.30 Capsicum annuum HOM05D003547 ORTHO05D004236 5.1e-32 141.4 96 71.9
PSO478G4332 Papaver somniferum HOM05D003547 ORTHO05D004236 1.1e-31 140.2 96 72.9
GSVIVG01019857001 Vitis vinifera HOM05D003547 ORTHO05D004236 1.9e-31 139.4 96 72.9
unitig_22.g5475 Utricularia gibba HOM05D003547 ORTHO05D004236 2.5e-31 139.0 97 74.2
SalBow1G4609 Salvia bowleyana HOM05D003547 ORTHO05D004236 3.3e-31 138.7 97 72.2
MSTRG.25577 Avicennia marina HOM05D003547 ORTHO05D004236 7.4e-31 137.5 97 72.2
Migut.E01295 Erythranthe guttata HOM05D003547 ORTHO05D004236 7.4e-31 137.5 97 73.2
Potri.003G121700 Populus trichocarpa HOM05D003547 ORTHO05D004236 1.3e-30 136.7 96 71.9
Potri.001G110100 Populus trichocarpa HOM05D003547 ORTHO05D004236 1.4e-29 133.3 96 70.8
TWI60G0357 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 1.4e-29 133.3 96 69.8
MBI04_g02076_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 1.8e-29 132.9 97 70.1
MBI04_g45341_MAGBIO Magnolia biondii HOM05D003547 ORTHO05D004236 1.8e-29 132.9 97 70.1
QL12p017284 Quercus lobata HOM05D003547 ORTHO05D004236 2.4e-29 132.5 96 68.8
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 3.1e-29 132.1 96 71.9
HanXRQChr02g0048801 Helianthus annuus HOM05D003547 ORTHO05D004236 3.1e-29 132.1 97 68.0
Sabra03G0085900 Salix brachista HOM05D003547 ORTHO05D004236 4.1e-29 131.7 96 68.8
Aqoxy7G00440 Aquilegia oxysepala HOM05D003547 ORTHO05D004236 6.9e-29 131.0 97 66.0
TWI15G0596 Tripterygium wilfordii HOM05D003547 ORTHO05D004236 6.9e-29 131.0 96 68.8
Manes.02G027500 Manihot esculenta HOM05D003547 ORTHO05D004236 1.5e-28 129.8 96 66.7
Gohir.A06G201800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 2.0e-28 129.4 96 67.7
Gorai.010G246400 Gossypium raimondii HOM05D003547 ORTHO05D004236 2.0e-28 129.4 96 67.7
CDE11G0458 Ceratophyllum demersum HOM05D003547 ORTHO05D004236 3.4e-28 128.6 96 67.7
MD06G1073000 Malus domestica HOM05D003547 ORTHO05D004236 3.4e-28 128.6 96 67.7
TAR629G0482 Trochodendron aralioides HOM05D003547 ORTHO05D004236 3.4e-28 128.6 96 68.8
CANSAT54G2270 Cannabis sativa HOM05D003547 ORTHO05D004236 4.5e-28 128.3 96 67.7
MELO3C014054.2 Cucumis melo HOM05D003547 ORTHO05D004236 4.5e-28 128.3 96 65.6
CsaV3_3G003720 Cucumis sativus L. HOM05D003547 ORTHO05D004236 4.5e-28 128.3 96 65.6
Sabra01G0083300 Salix brachista HOM05D003547 ORTHO05D004236 4.5e-28 128.3 96 66.7
ClCG00G000880 Citrullus lanatus HOM05D003547 ORTHO05D004236 5.9e-28 127.9 96 65.6
ClCG10G003720 Citrullus lanatus HOM05D003547 ORTHO05D004236 5.9e-28 127.9 96 65.6
Manes.01G066800 Manihot esculenta HOM05D003547 ORTHO05D004236 5.9e-28 127.9 96 66.7
Cfa012105 Carpinus fangiana HOM05D003547 ORTHO05D004236 7.7e-28 127.5 96 69.8
Duzib160G0880 Durio zibethinus HOM05D003547 ORTHO05D004236 7.7e-28 127.5 96 65.6
ClCG10G003730 Citrullus lanatus HOM05D003547 ORTHO05D004236 1.0e-27 127.1 93 67.7
CiPaw.11G141000 Carya illinoinensis HOM05D003547 ORTHO05D004236 1.3e-27 126.7 96 67.7
Duzib192G0273 Durio zibethinus HOM05D003547 ORTHO05D004236 1.3e-27 126.7 96 67.7
COL.COLO4_31135 Corchorus olitorius HOM05D003547 ORTHO05D004236 1.7e-27 126.3 96 66.7
Dinv39008 Davidia involucrata HOM05D003547 ORTHO05D004236 1.7e-27 126.3 97 70.1
Lsat_1_v5_gn_6_7220 Lactuca sativa HOM05D003547 ORTHO05D004236 1.7e-27 126.3 97 66.0
THA.LOC104818214 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 1.7e-27 126.3 96 64.6
Ciclev10020062m.g Citrus clementina HOM05D003547 ORTHO05D004236 2.2e-27 125.9 96 66.7
HanXRQChr13g0416721 Helianthus annuus HOM05D003547 ORTHO05D004236 2.2e-27 125.9 95 67.4
Lalb_Chr05g0225061 Lupinus albus HOM05D003547 ORTHO05D004236 2.2e-27 125.9 96 65.6
Eucgr.E00532 Eucalyptus grandis HOM05D003547 ORTHO05D004236 2.9e-27 125.6 96 66.7
MD04G1067300 Malus domestica HOM05D003547 ORTHO05D004236 5.0e-27 124.8 96 65.6
Ca_20247_v3 Cicer arietinum L. HOM05D003547 ORTHO05D004236 6.5e-27 124.4 96 64.6
DCAR_008422 Daucus carota HOM05D003547 ORTHO05D004236 6.5e-27 124.4 97 66.0
Lsat_1_v5_gn_6_87800 Lactuca sativa HOM05D003547 ORTHO05D004236 6.5e-27 124.4 95 67.4
Lj8A238G58 Lonicera japonica HOM05D003547 ORTHO05D004236 6.5e-27 124.4 97 64.9
Atru.chr9.1544 Acer truncatum HOM05D003547 ORTHO05D004236 8.5e-27 124.0 107 62.6
ECA233G1009 Erigeron canadensis HOM05D003547 ORTHO05D004236 8.5e-27 124.0 97 66.0
Gorai.005G120200 Gossypium raimondii HOM05D003547 ORTHO05D004236 8.5e-27 124.0 96 67.7
Nn1g01365 Nelumbo nucifera HOM05D003547 ORTHO05D004236 8.5e-27 124.0 96 67.7
Sed0023323 Sechium edule HOM05D003547 ORTHO05D004236 8.5e-27 124.0 96 64.6
TAR162G0002 Trochodendron aralioides HOM05D003547 ORTHO05D004236 8.5e-27 124.0 96 64.6
FvH4_5g01510 Fragaria vesca HOM05D003547 ORTHO05D004236 1.1e-26 123.6 96 64.6
FAN18G3487 Fragaria x ananassa HOM05D003547 ORTHO05D004236 1.1e-26 123.6 96 64.6
Gohir.D02G105800 Gossypium hirsutum HOM05D003547 ORTHO05D004236 1.1e-26 123.6 96 67.7
Hma1.2p1_0514F.1_g170080 Hydrangea macrophylla HOM05D003547 ORTHO05D004236 1.1e-26 123.6 97 64.9
FAN04G0150 Fragaria x ananassa HOM05D003547 ORTHO05D004236 1.4e-26 123.2 96 64.6
Thecc.06G017300 Theobroma cacao HOM05D003547 ORTHO05D004236 1.4e-26 123.2 96 63.5
Phvul.003G212400 Phaseolus vulgaris HOM05D003547 ORTHO05D004236 1.9e-26 122.9 96 63.5
RcHm_v2.0_Chr7g0199181 Rosa chinensis HOM05D003547 ORTHO05D004236 1.9e-26 122.9 96 63.5
Sc07g0009550 Simmondsia chinensis HOM05D003547 ORTHO05D004236 1.9e-26 122.9 97 62.9
PGR042G3585 Punica granatum HOM05D003547 ORTHO05D004236 2.5e-26 122.5 96 62.5
arahy.Tifrunner.gnm1.ann1.M5YJKY Arachis hypogaea HOM05D003547 ORTHO05D004236 3.2e-26 122.1 96 65.6
FAN13G0583 Fragaria x ananassa HOM05D003547 ORTHO05D004236 3.2e-26 122.1 96 64.6
AL1G24100 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 4.2e-26 121.7 96 64.6
Glyma.17G131500 Glycine max HOM05D003547 ORTHO05D004236 4.2e-26 121.7 96 61.5
ATR0757G074 Amborella trichopoda HOM05D003547 ORTHO05D004236 5.5e-26 121.3 96 65.6
THA.LOC104823570 Tarenaya hassleriana HOM05D003547 ORTHO05D004236 5.5e-26 121.3 96 62.5
arahy.Tifrunner.gnm1.ann1.Z37SN9 Arachis hypogaea HOM05D003547 ORTHO05D004236 7.2e-26 120.9 96 65.6
Lsat_1_v5_gn_3_5440 Lactuca sativa HOM05D003547 ORTHO05D004236 7.2e-26 120.9 97 61.9
Aa31LG2G540 Aethionema arabicum HOM05D003547 ORTHO05D004236 9.4e-26 120.6 96 62.5
Carub.0001s1233 Capsella rubella HOM05D003547 ORTHO05D004236 9.4e-26 120.6 96 63.5
FAN08G0461 Fragaria x ananassa HOM05D003547 ORTHO05D004236 9.4e-26 120.6 96 63.5
Gohir.A03G086500 Gossypium hirsutum HOM05D003547 ORTHO05D004236 1.2e-25 120.2 96 66.7
BcaC04g22467 Brassica carinata HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
C09p18950 Brassica napus HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
BolC9t54799H Brassica oleracea HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
BraA09t37214Z Brassica rapa HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
CSS0039885 Camellia sinensis var. sinensis HOM05D003547 ORTHO05D004236 1.6e-25 119.8 97 63.9
Duzib160G0138 Durio zibethinus HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
Lj4g0016141 Lotus japonicus HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 62.5
VMungo1215G1357 Vigna mungo HOM05D003547 ORTHO05D004236 1.6e-25 119.8 96 61.5
Actinidia14524 Actinidia chinensis HOM05D003547 ORTHO05D004236 2.1e-25 119.4 97 66.0
Dinv37691 Davidia involucrata HOM05D003547 ORTHO05D004236 2.1e-25 119.4 97 66.0
Medtr4g102750 Medicago truncatula HOM05D003547 ORTHO05D004236 2.1e-25 119.4 96 62.5
AL1G23990 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 2.7e-25 119.0 96 62.5
AT1G12640 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 2.7e-25 119.0 96 63.5
SEGI_17211 Sequoiadendron giganteum HOM05D003547 ORTHO05D004236 2.7e-25 119.0 96 63.5
AL2G12540 Arabidopsis lyrata HOM05D003547 ORTHO05D004236 3.6e-25 118.6 96 61.5
Actinidia05228 Actinidia chinensis HOM05D003547 ORTHO05D004236 4.7e-25 118.2 97 67.0
BcaB07g31380 Brassica carinata HOM05D003547 ORTHO05D004236 4.7e-25 118.2 96 60.4
BolC5t29805H Brassica oleracea HOM05D003547 ORTHO05D004236 4.7e-25 118.2 96 61.5
BraA06t24092Z Brassica rapa HOM05D003547 ORTHO05D004236 6.1e-25 117.9 96 61.5
AUR62021233 Chenopodium quinoa HOM05D003547 ORTHO05D004236 6.1e-25 117.9 96 61.5
A06p09030 Brassica napus HOM05D003547 ORTHO05D004236 7.9e-25 117.5 96 61.5
Thhalv10007564m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 7.9e-25 117.5 96 61.5
Glyma.05G049500 Glycine max HOM05D003547 ORTHO05D004236 7.9e-25 117.5 96 61.5
BcaC05g25124 Brassica carinata HOM05D003547 ORTHO05D004236 1.0e-24 117.1 96 61.5
Sed0008694 Sechium edule HOM05D003547 ORTHO05D004236 1.4e-24 116.7 96 62.5
AT1G63050 Arabidopsis thaliana HOM05D003547 ORTHO05D004236 1.8e-24 116.3 96 59.4
Sp1g11230 Schrenkiella parvula HOM05D003547 ORTHO05D004236 1.8e-24 116.3 96 60.4
A09p15710 Brassica napus HOM05D003547 ORTHO05D004236 2.3e-24 115.9 96 60.4
Psat4g067160 Pisum sativum HOM05D003547 ORTHO05D004236 2.3e-24 115.9 96 62.5
Sp2g01520 Schrenkiella parvula HOM05D003547 ORTHO05D004236 3.0e-24 115.5 96 59.4
CARHR048570 Cardamine hirsuta HOM05D003547 ORTHO05D004236 3.9e-24 115.2 96 59.4
HPP92_002471 Vanilla planifolia HOM05D003547 ORTHO05D004236 5.1e-24 114.8 96 62.5
Lj2A195T69 Lonicera japonica HOM05D003547 ORTHO05D004236 6.7e-24 114.4 97 63.9
BcaC05g25169 Brassica carinata HOM05D003547 ORTHO05D004236 8.8e-24 114.0 96 59.4
C05p10630 Brassica napus HOM05D003547 ORTHO05D004236 8.8e-24 114.0 96 59.4
EL10Ac3g05697 Beta vulgaris HOM05D003547 ORTHO05D004236 1.1e-23 113.6 129 50.4
CARHR012930 Cardamine hirsuta HOM05D003547 ORTHO05D004236 1.5e-23 113.2 94 60.6
Carub.0002s0195 Capsella rubella HOM05D003547 ORTHO05D004236 2.0e-23 112.8 94 60.6
Thhalv10023446m.g Eutrema salsugineum HOM05D003547 ORTHO05D004236 2.0e-23 112.8 96 59.4
HanXRQChr17g0533761 Helianthus annuus HOM05D003547 ORTHO05D004236 2.6e-23 112.5 97 60.8
AUR62016028 Chenopodium quinoa HOM05D003547 ORTHO05D004236 3.3e-23 112.1 96 58.3
SHI20220 Sapria himalayana HOM05D003547 ORTHO05D004236 4.4e-23 111.7 84 64.3
Ah.13g068290 Amaranthus hybridus HOM05D003547 ORTHO05D004236 5.7e-23 111.3 96 59.4
arahy.Tifrunner.gnm1.ann1.CHY9ZA Arachis hypogaea HOM05D003547 ORTHO05D004236 1.3e-22 110.2 96 57.3
Lalb_Chr09g0321171 Lupinus albus HOM05D003547 ORTHO05D004236 1.7e-22 109.8 96 56.2
arahy.Tifrunner.gnm1.ann1.Y3YVB2 Arachis hypogaea HOM05D003547 ORTHO05D004236 2.2e-22 109.4 96 57.3
arahy.Tifrunner.gnm1.ann1.HG54ZH Arachis hypogaea HOM05D003547 ORTHO05D004236 2.8e-22 109.0 96 58.3
Os02g0676000 Oryza sativa ssp. japonica HOM05D003547 ORTHO05D004236 2.8e-22 109.0 96 59.4
arahy.Tifrunner.gnm1.ann1.Q80APQ Arachis hypogaea HOM05D003547 ORTHO05D004236 3.7e-22 108.6 96 57.3
Zm00001eb250480 Zea mays HOM05D003547 ORTHO05D004236 4.8e-22 108.2 96 60.4
Mapoly0004s0125 Marchantia polymorpha HOM05D003547 ORTHO05D004236 1.8e-21 106.3 90 61.1
TPR.G19221 Trifolium pratense HOM05D003547 ORTHO05D004236 5.3e-21 104.8 83 62.7
Nitab4.5_0001200g0130 Nicotiana tabacum HOM05D003547 ORTHO05D004236 2.0e-20 102.8 69 75.4
arahy.Tifrunner.gnm1.ann1.BX3ZCH Arachis hypogaea HOM05D003547 ORTHO05D004236 4.5e-20 101.7 96 53.1
DCAR_004677 Daucus carota HOM05D003547 ORTHO05D004236 5.9e-20 101.3 97 56.7
Ah.07g208970 Amaranthus hybridus HOM05D003547 ORTHO05D004236 7.7e-20 100.9 97 53.6
Gohir.D06G220000 Gossypium hirsutum HOM05D003547 ORTHO05D004236 3.6e-17 92.0 72 62.5
Pp3c7_18310 Physcomitrium patens HOM05D003547 ORTHO05D004236 2.3e-16 89.4 92 47.8
Pp3c7_18311 Physcomitrium patens HOM05D003547 ORTHO05D004236 2.3e-16 89.4 92 47.8
Hund11772 Selenicereus undatus HOM05D003547 ORTHO05D004236 3.0e-16 89.0 97 48.5
Pp3c11_9320 Physcomitrium patens HOM05D003547 ORTHO05D004236 3.3e-15 85.5 92 45.7
vmacro22743 Vaccinium macrocarpon HOM05D003547 ORTHO05D004236 3.3e-15 85.5 62 67.7
Gohir.A10G000050 Gossypium hirsutum HOM05D003547 ORTHO05D004236 8.2e-14 80.9 60 65.0
ECA246G0929 Erigeron canadensis HOM05D003547 ORTHO05D004236 2.6e-12 75.9 69 56.5
AagrBONN_evm.TU.Sc2ySwM_117.4088 Anthoceros agrestis HOM05D003547 ORTHO05D004236 3.5e-12 75.5 94 44.7
CBR_g78882 Chara braunii HOM05D003547 ORTHO05D004236 1.0e-11 73.9 95 42.1


User provided reference genes

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