Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 6.5e-90 334.0 159 100.0
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-26 123.6 75 80.0
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 8.6e-26 120.9 68 79.4
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 1.1e-25 120.6 76 71.1
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 1.5e-25 120.2 67 80.6
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.5e-25 120.2 71 77.5
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-25 119.8 68 79.4
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-25 119.8 68 79.4
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.9e-25 119.8 68 79.4
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 4.3e-25 118.6 67 79.1
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 4.3e-25 118.6 105 56.2
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 4.3e-25 118.6 64 87.5
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 5.6e-25 118.2 71 76.1
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 5.6e-25 118.2 67 79.1
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 5.6e-25 118.2 67 79.1
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 9.6e-25 117.5 67 77.6
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 9.6e-25 117.5 67 77.6
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.6e-25 117.5 67 76.1
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 9.6e-25 117.5 67 79.1
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 9.6e-25 117.5 68 79.4
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.2e-24 117.1 68 79.4
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 1.6e-24 116.7 71 74.6
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 1.6e-24 116.7 67 77.6
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 2.1e-24 116.3 67 77.6
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 2.1e-24 116.3 74 71.6
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 2.8e-24 115.9 67 77.6
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 2.8e-24 115.9 67 77.6
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 2.8e-24 115.9 67 77.6
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 2.8e-24 115.9 67 76.1
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 3.6e-24 115.5 67 76.1
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 3.6e-24 115.5 67 76.1
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 3.6e-24 115.5 68 75.0
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 3.6e-24 115.5 68 75.0
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 3.6e-24 115.5 68 75.0
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.7e-24 115.2 74 68.9
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 77.6
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 4.7e-24 115.2 79 69.6
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 4.7e-24 115.2 67 76.1
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 6.2e-24 114.8 67 74.6
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 76.1
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 74.6
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 74.6
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 74.6
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 74.6
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 76.1
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 8.1e-24 114.4 67 74.6
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 74.6
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.1e-23 114.0 67 76.1
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.4e-23 113.6 67 76.1
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.8e-23 113.2 67 74.6
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 1.8e-23 113.2 67 76.1
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 2.4e-23 112.8 67 74.6
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 2.4e-23 112.8 75 70.7
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 2.4e-23 112.8 67 74.6
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 2.4e-23 112.8 67 74.6
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 3.1e-23 112.5 67 73.1
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 3.1e-23 112.5 67 74.6
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.1e-23 112.5 67 73.1
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.1e-23 112.5 67 73.1
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 3.1e-23 112.5 67 74.6
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 3.1e-23 112.5 66 74.2
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 73.1
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 73.1
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.0e-23 112.1 74 68.9
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 74.6
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 74.6
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 74.6
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.0e-23 112.1 67 74.6
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 5.2e-23 111.7 67 71.6
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 5.2e-23 111.7 67 74.6
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 5.2e-23 111.7 68 72.1
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 5.2e-23 111.7 67 74.6
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 71.6
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 73.1
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 73.1
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 73.1
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 73.1
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 6.8e-23 111.3 67 73.1
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 8.9e-23 110.9 67 73.1
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 8.9e-23 110.9 68 73.5
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.2e-22 110.5 67 74.6
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 1.2e-22 110.5 68 72.1
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 1.2e-22 110.5 68 72.1
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 1.2e-22 110.5 67 73.1
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.5e-22 110.2 67 71.6
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.5e-22 110.2 67 71.6
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.0e-22 109.8 68 72.1
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 2.0e-22 109.8 65 72.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.0e-22 109.8 67 71.6
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 2.6e-22 109.4 67 71.6
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.6e-22 109.4 67 73.1
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 2.6e-22 109.4 67 71.6
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 2.6e-22 109.4 67 71.6
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 2.6e-22 109.4 67 73.1
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.4e-22 109.0 68 72.1
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 4.4e-22 108.6 67 73.1
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 4.4e-22 108.6 68 70.6
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 5.8e-22 108.2 67 70.1
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 5.8e-22 108.2 67 70.1
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 5.8e-22 108.2 67 70.1
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 5.8e-22 108.2 67 70.1
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 5.8e-22 108.2 67 71.6
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 7.6e-22 107.8 67 71.6
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 9.9e-22 107.5 65 72.3
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 9.9e-22 107.5 67 71.6
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 9.9e-22 107.5 67 71.6
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 1.3e-21 107.1 67 70.1
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 1.3e-21 107.1 67 71.6
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.7e-21 106.7 67 70.1
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.7e-21 106.7 65 70.8
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 1.7e-21 106.7 68 70.6
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 2.2e-21 106.3 65 70.8
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-21 105.9 71 66.2
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 3.8e-21 105.5 67 70.1
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 3.8e-21 105.5 68 67.6
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 3.8e-21 105.5 68 67.6
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 4.9e-21 105.1 68 67.6
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 4.9e-21 105.1 68 67.6
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 8.4e-21 104.4 68 67.6
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 2.4e-20 102.8 67 67.2
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 4.2e-20 102.1 68 66.2
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 4.2e-20 102.1 68 66.2
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 4.2e-20 102.1 68 66.2
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 4.2e-20 102.1 68 66.2
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 4.2e-20 102.1 68 66.2
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 4.2e-20 102.1 62 72.6
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 5.4e-20 101.7 68 69.1
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 2.1e-19 99.8 68 64.7
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.5e-19 99.0 95 51.6
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 3.5e-19 99.0 65 66.2
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 7.8e-19 97.8 71 63.4
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.3e-18 97.1 96 51.0
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 6.6e-18 94.7 67 67.2
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 1.1e-17 94.0 71 62.0
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 7.3e-17 91.3 48 87.5
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 89.4 53 75.5
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 89.4 53 75.5
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 89.4 53 75.5
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.8e-16 89.4 53 75.5
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 6.2e-16 88.2 58 70.7
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 1.5e-14 83.6 67 59.7
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 2.0e-14 83.2 41 85.4
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 5.8e-14 81.6 49 71.4
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 1.9e-12 76.6 48 70.8
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 2.4e-12 76.3 56 60.7
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 4.2e-12 75.5 67 56.7
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 5.4e-12 75.1 68 48.5
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 5.4e-12 75.1 49 71.4
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.6e-11 73.6 49 65.3
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.0e-10 69.3 49 63.3
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 2.1e-08 63.2 69 53.6
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 3.4e-06 55.8 45 55.6


User provided reference genes

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