Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G900.40 Capsicum annuum HOM05D005747 ORTHO05D007159 7.2e-53 210.3 106 100.0
Solyc09g008140.3 Solanum lycopersicum HOM05D005747 ORTHO05D007159 3.4e-50 201.4 106 94.3
Sopen09g002940 Solanum pennellii HOM05D005747 ORTHO05D007159 3.4e-50 201.4 106 94.3
Peaxi162Scf00701g00029 Petunia axillaris HOM05D005747 ORTHO05D007159 2.0e-47 192.2 106 89.6
PGSC0003DMG400003860 Solanum tuberosum HOM05D005747 ORTHO05D007159 1.6e-44 182.6 134 73.9
Rhsim03G0092400 Rhododendron simsii HOM05D005747 ORTHO05D007159 1.5e-42 176.0 106 78.3
Actinidia28901 Actinidia chinensis HOM05D005747 ORTHO05D007159 9.8e-42 173.3 106 77.4
FAN05G2010 Fragaria x ananassa HOM05D005747 ORTHO05D007159 2.2e-41 172.2 102 79.4
Migut.L01698 Erythranthe guttata HOM05D005747 ORTHO05D007159 2.8e-41 171.8 106 76.4
FvH4_6g16280 Fragaria vesca HOM05D005747 ORTHO05D007159 3.7e-41 171.4 102 78.4
FAN02G1695 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.7e-41 171.4 102 78.4
FAN14G5754 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.7e-41 171.4 102 78.4
vmacro07288 Vaccinium macrocarpon HOM05D005747 ORTHO05D007159 4.9e-41 171.0 106 77.4
Glyma.19G183500 Glycine max HOM05D005747 ORTHO05D007159 8.3e-41 170.2 105 74.3
RcHm_v2.0_Chr3g0470141 Rosa chinensis HOM05D005747 ORTHO05D007159 1.4e-40 169.5 102 77.5
Haze_20124 Corylus avellana HOM05D005747 ORTHO05D007159 1.8e-40 169.1 105 75.2
Prupe.6G232700 Prunus persica HOM05D005747 ORTHO05D007159 1.8e-40 169.1 105 71.4
Glyma.13G143500 Glycine max HOM05D005747 ORTHO05D007159 2.4e-40 168.7 105 72.4
Actinidia08777 Actinidia chinensis HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 74.5
CSS0033757 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 3.1e-40 168.3 106 73.6
Cfa020071 Carpinus fangiana HOM05D005747 ORTHO05D007159 3.1e-40 168.3 105 73.3
Haze_20552 Corylus avellana HOM05D005747 ORTHO05D007159 3.1e-40 168.3 105 74.3
FAN09G1333 Fragaria x ananassa HOM05D005747 ORTHO05D007159 3.1e-40 168.3 102 77.5
Lj5g0010104 Lotus japonicus HOM05D005747 ORTHO05D007159 4.1e-40 167.9 104 74.0
arahy.Tifrunner.gnm1.ann1.548B55 Arachis hypogaea HOM05D005747 ORTHO05D007159 7.0e-40 167.2 105 74.3
Potri.006G125300 Populus trichocarpa HOM05D005747 ORTHO05D007159 7.0e-40 167.2 102 75.5
SGA_v2.0_scaffold75G24844 Striga asiatica HOM05D005747 ORTHO05D007159 7.0e-40 167.2 103 76.7
arahy.Tifrunner.gnm1.ann1.GC88CS Arachis hypogaea HOM05D005747 ORTHO05D007159 9.2e-40 166.8 105 73.3
Nitab4.5_0002632g0020 Nicotiana tabacum HOM05D005747 ORTHO05D007159 1.2e-39 166.4 106 81.1
arahy.Tifrunner.gnm1.ann1.47U1LD Arachis hypogaea HOM05D005747 ORTHO05D007159 1.6e-39 166.0 105 73.3
MSTRG.19175 Avicennia marina HOM05D005747 ORTHO05D007159 1.6e-39 166.0 106 73.6
Cc06_g04180 Coffea canephora HOM05D005747 ORTHO05D007159 2.0e-39 165.6 106 75.5
Duzib128G1360 Durio zibethinus HOM05D005747 ORTHO05D007159 2.0e-39 165.6 105 73.3
Nitab4.5_0000578g0140 Nicotiana tabacum HOM05D005747 ORTHO05D007159 2.0e-39 165.6 106 80.2
arahy.Tifrunner.gnm1.ann1.W5J3RK Arachis hypogaea HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 73.3
Manes.08G009800 Manihot esculenta HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 70.5
PGR004G0006 Punica granatum HOM05D005747 ORTHO05D007159 2.7e-39 165.2 105 73.3
Glyma.10G057000 Glycine max HOM05D005747 ORTHO05D007159 3.5e-39 164.9 105 69.5
Phvul.001G178800 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 5.9e-39 164.1 105 69.5
CANSAT80G0760 Cannabis sativa HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 73.3
Duzib093G2107 Durio zibethinus HOM05D005747 ORTHO05D007159 7.8e-39 163.7 105 70.5
Thecc.05G065200 Theobroma cacao HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 71.4
VMungo1383G0680 Vigna mungo HOM05D005747 ORTHO05D007159 1.0e-38 163.3 105 71.4
Medtr7g101880 Medicago truncatula HOM05D005747 ORTHO05D007159 1.3e-38 162.9 103 70.9
TAR369G0407 Trochodendron aralioides HOM05D005747 ORTHO05D007159 1.3e-38 162.9 105 71.4
Psat0s2933g0080 Pisum sativum HOM05D005747 ORTHO05D007159 2.3e-38 162.2 105 70.5
Atru.chr8.1820 Acer truncatum HOM05D005747 ORTHO05D007159 2.9e-38 161.8 105 70.5
PSO063G6473 Papaver somniferum HOM05D005747 ORTHO05D007159 2.9e-38 161.8 105 70.5
PSO339G2391 Papaver somniferum HOM05D005747 ORTHO05D007159 2.9e-38 161.8 105 70.5
Hma1.2p1_0205F.1_g087080 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 3.8e-38 161.4 104 73.1
QL07p043606 Quercus lobata HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 71.4
THA.LOC104826911 Tarenaya hassleriana HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 71.4
TPR.G9369 Trifolium pratense HOM05D005747 ORTHO05D007159 3.8e-38 161.4 105 71.4
EL10Ac1g00026 Beta vulgaris HOM05D005747 ORTHO05D007159 8.6e-38 160.2 105 69.5
Thhalv10015093m.g Eutrema salsugineum HOM05D005747 ORTHO05D007159 8.6e-38 160.2 103 71.8
MD12G1113800 Malus domestica HOM05D005747 ORTHO05D007159 8.6e-38 160.2 105 67.6
Eucgr.A01688 Eucalyptus grandis HOM05D005747 ORTHO05D007159 1.1e-37 159.8 105 68.6
CSS0022084 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.5e-37 159.5 106 71.7
Lalb_Chr02g0155891 Lupinus albus HOM05D005747 ORTHO05D007159 1.5e-37 159.5 104 70.2
Lalb_Chr20g0112621 Lupinus albus HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 68.6
MD04G1094200 Malus domestica HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 66.7
Psat6g073040 Pisum sativum HOM05D005747 ORTHO05D007159 1.5e-37 159.5 105 72.4
CSS0033637 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.9e-37 159.1 106 71.7
Dinv37311 Davidia involucrata HOM05D005747 ORTHO05D007159 1.9e-37 159.1 106 72.6
ClCG10G020160 Citrullus lanatus HOM05D005747 ORTHO05D007159 2.5e-37 158.7 105 68.6
MELO3C009353.2 Cucumis melo HOM05D005747 ORTHO05D007159 3.3e-37 158.3 105 68.6
TAR633G0139 Trochodendron aralioides HOM05D005747 ORTHO05D007159 4.3e-37 157.9 105 69.5
CsaV3_3G035950 Cucumis sativus L. HOM05D005747 ORTHO05D007159 5.6e-37 157.5 105 68.6
Aqoxy1G01163 Aquilegia oxysepala HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 68.6
TWI74G1168 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 7.3e-37 157.1 105 71.4
Gohir.D09G143100 Gossypium hirsutum HOM05D005747 ORTHO05D007159 2.1e-36 155.6 105 69.5
Gorai.006G164600 Gossypium raimondii HOM05D005747 ORTHO05D007159 2.1e-36 155.6 105 69.5
TPR.G25697 Trifolium pratense HOM05D005747 ORTHO05D007159 2.1e-36 155.6 99 72.7
AL6G12680 Arabidopsis lyrata HOM05D005747 ORTHO05D007159 3.6e-36 154.8 103 69.9
Potri.016G091900 Populus trichocarpa HOM05D005747 ORTHO05D007159 3.6e-36 154.8 102 70.6
Sed0019850 Sechium edule HOM05D005747 ORTHO05D007159 3.6e-36 154.8 105 68.6
SalBow5G0179 Salvia bowleyana HOM05D005747 ORTHO05D007159 4.7e-36 154.5 106 67.9
SalBow5G1412 Salvia bowleyana HOM05D005747 ORTHO05D007159 4.7e-36 154.5 106 67.9
C02p00970 Brassica napus HOM05D001005 ORTHO05D000836 6.1e-36 154.1 103 69.9
Nn7g38309 Nelumbo nucifera HOM05D005747 ORTHO05D007159 6.1e-36 154.1 105 67.6
CARHR210000 Cardamine hirsuta HOM05D005747 ORTHO05D007159 8.0e-36 153.7 103 68.9
Ciclev10013173m.g Citrus clementina HOM05D005747 ORTHO05D007159 8.0e-36 153.7 105 65.7
BcaC03g13014 Brassica carinata HOM05D005747 ORTHO05D007159 1.0e-35 153.3 103 69.9
Gohir.A09G147500 Gossypium hirsutum HOM05D005747 ORTHO05D007159 1.0e-35 153.3 105 68.6
TWI77G0618 Tripterygium wilfordii HOM05D005747 ORTHO05D007159 1.0e-35 153.3 105 70.5
Aa31LG3G2310 Aethionema arabicum HOM05D005747 ORTHO05D007159 1.4e-35 152.9 105 65.7
AT5G03345 Arabidopsis thaliana HOM05D005747 ORTHO05D007159 1.8e-35 152.5 103 68.9
Ca_11494_v3 Cicer arietinum L. HOM05D005747 ORTHO05D007159 1.8e-35 152.5 105 70.5
GSVIVG01025728001 Vitis vinifera HOM05D005747 ORTHO05D007159 1.8e-35 152.5 105 66.7
Medtr1g063370 Medicago truncatula HOM05D005747 ORTHO05D007159 1.2e-34 149.8 105 67.6
Sp6g39390 Schrenkiella parvula HOM05D005747 ORTHO05D007159 1.2e-34 149.8 103 66.0
Phvul.007G149300 Phaseolus vulgaris HOM05D005747 ORTHO05D007159 1.5e-34 149.4 104 65.4
Zm00001eb028740 Zea mays HOM05D005747 ORTHO05D007159 1.5e-34 149.4 105 62.9
Carub.0006s0216 Capsella rubella HOM05D005747 ORTHO05D007159 2.0e-34 149.1 103 66.0
Zm00001eb136890 Zea mays HOM05D005747 ORTHO05D007159 2.6e-34 148.7 104 63.5
Sc02g0001670 Simmondsia chinensis HOM05D005747 ORTHO05D007159 5.7e-34 147.5 106 67.9
Manes.09G066900 Manihot esculenta HOM05D005747 ORTHO05D007159 7.5e-34 147.1 104 63.5
Os12g0566400 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 1.3e-33 146.4 105 61.0
Lsat_1_v5_gn_6_25181 Lactuca sativa HOM05D005747 ORTHO05D007159 2.9e-33 145.2 102 69.6
Ah.05g172440 Amaranthus hybridus HOM05D005747 ORTHO05D007159 4.9e-33 144.4 105 62.9
unitig_578.g16384 Utricularia gibba HOM05D005747 ORTHO05D007159 8.3e-33 143.7 99 65.7
ECA233G4120 Erigeron canadensis HOM05D005747 ORTHO05D007159 5.4e-32 141.0 102 66.7
Glyma.03G182900 Glycine max HOM05D005747 ORTHO05D007159 7.0e-32 140.6 134 53.7
HanXRQChr13g0401071 Helianthus annuus HOM05D005747 ORTHO05D007159 1.6e-31 139.4 106 61.3
HPP92_009808 Vanilla planifolia HOM05D005747 ORTHO05D007159 3.3e-29 131.7 92 66.3
Mapoly0011s0153 Marchantia polymorpha HOM05D005747 ORTHO05D007159 4.3e-29 131.3 103 59.2
HanXRQChr02g0051611 Helianthus annuus HOM05D005747 ORTHO05D007159 9.5e-29 130.2 106 59.4
Gorai.006G061900 Gossypium raimondii HOM05D005747 ORTHO05D007159 3.6e-28 128.3 107 59.8
CDE06G0870 Ceratophyllum demersum HOM05D005747 ORTHO05D007159 1.0e-27 126.7 94 61.7
SEGI_15519 Sequoiadendron giganteum HOM05D005747 ORTHO05D007159 2.0e-26 122.5 93 59.1
SMO137G0056 Selaginella moellendorffii HOM05D005747 ORTHO05D007159 2.6e-26 122.1 91 60.4
Oeu053677.1 Olea europaea HOM05D005747 ORTHO05D007159 5.8e-26 120.9 78 74.4
Hund20347 Selenicereus undatus HOM05D005747 ORTHO05D007159 2.9e-25 118.6 77 70.1
Pp3c5_16080 Physcomitrium patens HOM05D005747 ORTHO05D007159 1.9e-24 115.9 95 60.0
Hma1.2p1_0205F.1_g087090 Hydrangea macrophylla HOM05D005747 ORTHO05D007159 2.4e-24 115.5 76 72.4
Lj2A1109T71 Lonicera japonica HOM05D005747 ORTHO05D007159 9.2e-24 113.6 91 57.1
AagrBONN_evm.TU.Sc2ySwM_362.1648 Anthoceros agrestis HOM05D005747 ORTHO05D007159 2.0e-23 112.5 90 56.7
Pp3c6_8930 Physcomitrium patens HOM05D005747 ORTHO05D007159 4.6e-23 111.3 91 58.2
Oeu045224.1 Olea europaea HOM05D005747 ORTHO05D007159 6.0e-23 110.9 86 64.0
CSS0043170 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 1.0e-22 110.2 70 74.3
DCAR_020822 Daucus carota HOM05D005747 ORTHO05D007159 1.7e-22 109.4 76 69.7
Sabra16G0097500 Salix brachista HOM05D005747 ORTHO05D007159 2.3e-22 109.0 73 68.5
CSS0041044 Camellia sinensis var. sinensis HOM05D005747 ORTHO05D007159 8.6e-22 107.1 70 72.9
CiPaw.09G219400 Carya illinoinensis HOM05D005747 ORTHO05D007159 1.5e-21 106.3 98 57.1
AUR62023620 Chenopodium quinoa HOM05D005747 ORTHO05D007159 9.5e-21 103.6 113 50.4
AUR62004704 Chenopodium quinoa HOM05D005747 ORTHO05D007159 1.4e-19 99.8 105 49.5
Sed0003931 Sechium edule HOM05D005747 ORTHO05D007159 2.6e-18 95.5 66 60.6
ATR0104G002 Amborella trichopoda HOM05D005747 ORTHO05D007159 2.2e-17 92.4 77 55.8
Dinv35784 Davidia involucrata HOM05D005747 ORTHO05D007159 1.3e-14 83.2 49 83.7
Lalb_Chr02g0156001 Lupinus albus HOM05D005747 ORTHO05D007159 4.7e-12 74.7 79 51.9
COL.COLO4_26972 Corchorus olitorius HOM05D005747 ORTHO05D007159 4.4e-10 68.2 45 62.2
Lalb_Chr25g0289001 Lupinus albus HOM05D005747 ORTHO05D007159 2.2e-09 65.9 50 64.0
MCO03G507 Micromonas commoda HOM05D005747 ORTHO05D007159 8.4e-09 63.9 84 39.3
Cre03.g183050 Chlamydomonas reinhardtii HOM05D005747 ORTHO05D007159 4.6e-07 58.2 99 30.3
Os11g0568633 Oryza sativa ssp. japonica HOM05D005747 ORTHO05D007159 7.8e-07 57.4 42 52.4


User provided reference genes

Program Settings