Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 3.8e-48 194.5 99 100.0
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 1.9e-23 112.5 76 75.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.1e-22 109.0 61 86.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 2.8e-22 108.6 76 73.7
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 3.1e-21 105.1 76 71.1
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 5.8e-20 100.9 61 80.3
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 6.6e-16 87.4 61 72.1
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.5e-15 86.3 61 72.1
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 1.9e-15 85.9 61 68.9
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.9e-15 85.9 61 68.9
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 3.3e-15 85.1 76 60.5
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 7.3e-15 84.0 61 72.1
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 9.5e-15 83.6 61 70.5
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 9.5e-15 83.6 61 68.9
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 1.2e-14 83.2 82 54.9
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.2e-14 83.2 76 59.2
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 2.8e-14 82.0 76 59.2
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 8.1e-14 80.5 61 63.9
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 1.4e-13 79.7 61 63.9
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 1.4e-13 79.7 61 68.9
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.8e-13 79.3 61 65.6
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.3e-13 79.0 76 56.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 2.3e-13 79.0 61 65.6
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 2.3e-13 79.0 61 67.2
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 3.1e-13 78.6 61 67.2
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 3.1e-13 78.6 61 68.9
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.1e-13 78.6 82 53.7
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.1e-13 78.6 76 56.6
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 3.1e-13 78.6 76 56.6
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.0e-13 78.2 61 67.2
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 5.2e-13 77.8 61 65.6
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-13 77.8 61 68.9
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 5.2e-13 77.8 61 68.9
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 63.9
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 62.3
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 65.6
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 62.3
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 67.2
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.8e-13 77.4 61 67.2
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 8.9e-13 77.0 61 65.6
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.2e-12 76.6 85 55.3
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.5e-12 76.3 61 65.6
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 65.6
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 63.9
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 63.9
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 63.9
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 63.9
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 2.0e-12 75.9 82 51.2
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 2.0e-12 75.9 62 71.0
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 2.0e-12 75.9 61 65.6
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 2.6e-12 75.5 61 65.6
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 2.6e-12 75.5 61 63.9
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 2.6e-12 75.5 76 55.3
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 2.6e-12 75.5 82 51.2
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 2.6e-12 75.5 61 65.6
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 2.6e-12 75.5 82 51.2
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 3.4e-12 75.1 68 60.3
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 3.4e-12 75.1 68 60.3
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 63.9
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 63.9
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 63.9
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 65.6
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.4e-12 75.1 76 55.3
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 63.9
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 62.3
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.4e-12 75.1 61 63.9
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 4.4e-12 74.7 61 63.9
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 4.4e-12 74.7 61 63.9
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 4.4e-12 74.7 76 55.3
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 4.4e-12 74.7 61 62.3
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 4.4e-12 74.7 61 63.9
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 5.8e-12 74.3 82 51.2
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 5.8e-12 74.3 61 63.9
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 5.8e-12 74.3 82 53.7
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 63.9
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 63.9
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 63.9
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 62.3
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 62.3
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 62.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 65.6
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 7.5e-12 73.9 61 62.3
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 9.9e-12 73.6 61 63.9
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 9.9e-12 73.6 82 50.0
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.3e-11 73.2 61 65.6
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-11 73.2 61 63.9
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.3e-11 73.2 61 63.9
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.3e-11 73.2 82 50.0
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 1.3e-11 73.2 61 63.9
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 1.3e-11 73.2 61 63.9
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.7e-11 72.8 61 62.3
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 1.7e-11 72.8 61 63.9
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.2e-11 72.4 61 63.9
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.2e-11 72.4 61 63.9
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 2.9e-11 72.0 61 63.9
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 2.9e-11 72.0 61 63.9
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 3.7e-11 71.6 76 53.9
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 3.7e-11 71.6 61 60.7
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.9e-11 71.2 61 62.3
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 4.9e-11 71.2 61 60.7
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 4.9e-11 71.2 78 48.7
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 6.4e-11 70.9 61 60.7
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 8.3e-11 70.5 61 60.7
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 1.1e-10 70.1 76 52.6
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 1.1e-10 70.1 61 62.3
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-10 70.1 61 59.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 1.9e-10 69.3 82 48.8
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 2.4e-10 68.9 58 63.8
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 2.4e-10 68.9 61 59.0
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 4.1e-10 68.2 61 60.7
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 4.1e-10 68.2 62 61.3
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 4.1e-10 68.2 59 59.3
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 7.1e-10 67.4 61 57.4
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 7.1e-10 67.4 61 59.0
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 1.2e-09 66.6 62 58.1
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 1.2e-09 66.6 61 57.4
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.2e-09 66.6 67 56.7
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 2.1e-09 65.9 61 55.7
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 2.7e-09 65.5 61 54.1
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 3.5e-09 65.1 59 61.0
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 6.0e-09 64.3 83 49.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 1.5e-07 59.7 61 52.5
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.5e-07 58.9 56 53.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.1e-06 55.8 56 51.8
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 4.7e-06 54.7 61 52.5
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 6.2e-06 54.3 61 55.7


User provided reference genes

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