Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G90.3 Capsicum annuum HOM05D000692 ORTHO05D000533 3.0e-34 147.9 73 100.0
Sopen08g006950 Solanum pennellii HOM05D000692 ORTHO05D000533 7.0e-23 110.2 68 79.4
PGSC0003DMG400009652 Solanum tuberosum HOM05D000692 ORTHO05D000533 2.7e-22 108.2 68 77.9
Solyc08g016580.1 Solanum lycopersicum HOM05D000692 ORTHO05D000533 1.9e-20 102.1 68 75.0
Nitab4.5_0000420g0110 Nicotiana tabacum HOM05D000692 ORTHO05D000533 2.8e-19 98.2 68 70.6
Nitab4.5_0009189g0010 Nicotiana tabacum HOM05D000692 ORTHO05D000533 6.1e-19 97.1 68 70.6
Peaxi162Scf01211g00122 Petunia axillaris HOM05D000692 ORTHO05D000533 1.0e-18 96.3 55 80.0
MSTRG.16241 Avicennia marina HOM05D000692 ORTHO05D000533 3.2e-15 84.7 55 69.1
CAN.G702.37 Capsicum annuum HOM05D000692 ORTHO05D000533 2.0e-14 82.0 55 63.6
Nitab4.5_0002275g0010 Nicotiana tabacum HOM05D000692 ORTHO05D000533 2.0e-14 82.0 52 67.3
Peaxi162Scf00067g00193 Petunia axillaris HOM05D000692 ORTHO05D000533 2.0e-14 82.0 54 63.0
Nitab4.5_0012940g0030 Nicotiana tabacum HOM05D000692 ORTHO05D000533 2.7e-14 81.6 51 68.6
SalBow8G0770 Salvia bowleyana HOM05D000692 ORTHO05D000533 3.5e-14 81.3 55 67.3
Oeu042447.1 Olea europaea HOM05D000692 ORTHO05D000533 4.6e-14 80.9 55 63.6
PGSC0003DMG400021164 Solanum tuberosum HOM05D000692 ORTHO05D000533 4.6e-14 80.9 53 64.2
Sopen02g019590 Solanum pennellii HOM05D000692 ORTHO05D000533 5.9e-14 80.5 53 62.3
Cc09_g03380 Coffea canephora HOM05D000692 ORTHO05D000533 7.8e-14 80.1 55 61.8
Peaxi162Scf00443g00044 Petunia axillaris HOM05D000692 ORTHO05D000533 7.8e-14 80.1 57 66.7
Dinv30742 Davidia involucrata HOM05D000692 ORTHO05D000533 2.9e-13 78.2 55 65.5
Cc00_g12080 Coffea canephora HOM05D000692 ORTHO05D000533 8.6e-13 76.6 54 55.6
RhsimUnG0055300 Rhododendron simsii HOM05D000692 ORTHO05D000533 8.6e-13 76.6 72 55.6
Oeu052371.1 Olea europaea HOM05D000692 ORTHO05D000533 1.1e-12 76.3 55 61.8
MSTRG.7486 Avicennia marina HOM05D000692 ORTHO05D000533 2.5e-12 75.1 55 61.8
Sc05g0006210 Simmondsia chinensis HOM05D000692 ORTHO05D000533 2.5e-12 75.1 63 54.0
PSO675G5649 Papaver somniferum HOM05D000692 ORTHO05D000533 4.3e-12 74.3 55 61.8
GSVIVG01021449001 Vitis vinifera HOM05D000692 ORTHO05D000533 4.3e-12 74.3 55 61.8
AUR62031146 Chenopodium quinoa HOM05D000692 ORTHO05D000533 5.6e-12 73.9 66 50.0
SGA_v2.0_scaffold1G00172 Striga asiatica HOM05D000692 ORTHO05D000533 5.6e-12 73.9 55 58.2
Ah.09g233760 Amaranthus hybridus HOM05D000692 ORTHO05D000533 7.3e-12 73.6 55 58.2
CSS0022498 Camellia sinensis var. sinensis HOM05D000692 ORTHO05D000533 7.3e-12 73.6 54 59.3
EL10Ac4g09767 Beta vulgaris HOM05D000692 ORTHO05D000533 9.5e-12 73.2 66 53.0
Lj2P305T38 Lonicera japonica HOM05D000692 ORTHO05D000533 9.5e-12 73.2 55 65.5
Manes.15G121300 Manihot esculenta HOM05D000692 ORTHO05D000533 9.5e-12 73.2 67 49.3
PGR042G2765 Punica granatum HOM05D000692 ORTHO05D000533 1.2e-11 72.8 68 50.0
AUR62036557 Chenopodium quinoa HOM05D000692 ORTHO05D000533 1.6e-11 72.4 66 50.0
Potri.004G064700 Populus trichocarpa HOM05D000692 ORTHO05D000533 2.1e-11 72.0 55 56.4
Nn5g26740 Nelumbo nucifera HOM05D000692 ORTHO05D000533 2.8e-11 71.6 55 56.4
PSO170G5810 Papaver somniferum HOM05D000692 ORTHO05D000533 2.8e-11 71.6 55 54.5
AUR62030202 Chenopodium quinoa HOM05D000692 ORTHO05D000533 3.6e-11 71.2 66 50.0
Atru.chr10.1236 Acer truncatum HOM05D000692 ORTHO05D000533 4.7e-11 70.9 55 56.4
Hma1.2p1_0286F.1_g113980 Hydrangea macrophylla HOM05D000692 ORTHO05D000533 4.7e-11 70.9 55 54.5
TAR627G1120 Trochodendron aralioides HOM05D000692 ORTHO05D000533 4.7e-11 70.9 55 58.2
Carub.0008s0168 Capsella rubella HOM05D000692 ORTHO05D000533 8.0e-11 70.1 56 58.9
DCAR_002175 Daucus carota HOM05D000692 ORTHO05D000533 1.0e-10 69.7 53 52.8
MBI07_g26353_MAGBIO Magnolia biondii HOM05D000692 ORTHO05D000533 1.0e-10 69.7 55 49.1
HanXRQChr15g0486521 Helianthus annuus HOM05D000692 ORTHO05D000533 1.4e-10 69.3 55 56.4
PSO407G0267 Papaver somniferum HOM05D000692 ORTHO05D000533 1.4e-10 69.3 55 54.5
Aqoxy1G01710 Aquilegia oxysepala HOM05D000692 ORTHO05D000533 2.3e-10 68.6 54 53.7
Sabra04G0043000 Salix brachista HOM05D000692 ORTHO05D000533 3.1e-10 68.2 55 52.7
Eucgr.E02409 Eucalyptus grandis HOM05D000692 ORTHO05D000533 4.0e-10 67.8 55 50.9
QL05p058278 Quercus lobata HOM05D000692 ORTHO05D000533 4.0e-10 67.8 55 54.5
Zm00001eb298810 Zea mays HOM05D000692 ORTHO05D000533 4.0e-10 67.8 55 49.1
THA.LOC104806126 Tarenaya hassleriana HOM05D000692 ORTHO05D000533 5.2e-10 67.4 54 55.6
Nn3g20771 Nelumbo nucifera HOM05D000692 ORTHO05D000533 6.8e-10 67.0 55 52.7
Os07g0119800 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 6.8e-10 67.0 55 49.1
TAR624G0093 Trochodendron aralioides HOM05D000692 ORTHO05D000533 6.8e-10 67.0 55 50.9
PSO407G0262 Papaver somniferum HOM05D000692 ORTHO05D000533 8.9e-10 66.6 55 52.7
AL8G12230 Arabidopsis lyrata HOM05D000692 ORTHO05D000533 1.2e-09 66.2 56 55.4
AT5G46230 Arabidopsis thaliana HOM05D000692 ORTHO05D000533 1.2e-09 66.2 56 55.4
Thhalv10001128m.g Eutrema salsugineum HOM05D000692 ORTHO05D000533 1.5e-09 65.9 56 55.4
Zm00001eb067850 Zea mays HOM05D000692 ORTHO05D000533 1.5e-09 65.9 55 50.9
Zm00001eb067860 Zea mays HOM05D000692 ORTHO05D000533 1.5e-09 65.9 55 50.9
MBI10_g32109_MAGBIO Magnolia biondii HOM05D000692 ORTHO05D000533 2.6e-09 65.1 55 50.9
Ciclev10017099m.g Citrus clementina HOM05D000692 ORTHO05D000533 3.4e-09 64.7 52 53.8
Aa31LG9G6640 Aethionema arabicum HOM05D000692 ORTHO05D000533 4.4e-09 64.3 56 51.8
Cfa000948 Carpinus fangiana HOM05D000692 ORTHO05D000533 4.4e-09 64.3 55 50.9
Sp2g11090 Schrenkiella parvula HOM05D000692 ORTHO05D000533 5.8e-09 63.9 56 53.6
TAR626G1531 Trochodendron aralioides HOM05D000692 ORTHO05D000533 5.8e-09 63.9 55 45.5
ATR0044G031 Amborella trichopoda HOM05D000692 ORTHO05D000533 7.5e-09 63.5 56 57.1
Eucgr.E02382 Eucalyptus grandis HOM05D000692 ORTHO05D000533 7.5e-09 63.5 55 47.3
CiPaw.09G123900 Carya illinoinensis HOM05D000692 ORTHO05D000533 9.8e-09 63.2 55 50.9
Haze_05592 Corylus avellana HOM05D000692 ORTHO05D000533 9.8e-09 63.2 55 50.9
Os07g0120500 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 1.3e-08 62.8 55 49.1
Os07g0118200 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 1.7e-08 62.4 55 50.9
Os07g0120300 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 1.7e-08 62.4 55 49.1
CDE06G1749 Ceratophyllum demersum HOM05D000692 ORTHO05D000533 2.2e-08 62.0 55 47.3
Os07g0120100 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 2.2e-08 62.0 55 49.1
A06p46060 Brassica napus HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 51.8
C07p29460 Brassica napus HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 51.8
BolC7t43495H Brassica oleracea HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 51.8
BraA06t27471Z Brassica rapa HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 51.8
CDE02G0707 Ceratophyllum demersum HOM05D000692 ORTHO05D000533 2.9e-08 61.6 55 47.3
Sp2g11100 Schrenkiella parvula HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 53.6
Thecc.06G151100 Theobroma cacao HOM05D000692 ORTHO05D000533 2.9e-08 61.6 54 48.1
Zm00001eb067870 Zea mays HOM05D000692 ORTHO05D000533 2.9e-08 61.6 56 50.0
TWI09G0372 Tripterygium wilfordii HOM05D000692 ORTHO05D000533 3.7e-08 61.2 56 51.8
HPP92_026581 Vanilla planifolia HOM05D000692 ORTHO05D000533 3.7e-08 61.2 55 45.5
Zm00001eb067840 Zea mays HOM05D000692 ORTHO05D000533 3.7e-08 61.2 56 48.2
Lj2P306T19 Lonicera japonica HOM05D000692 ORTHO05D000533 4.9e-08 60.8 54 46.3
BcaB07g30847 Brassica carinata HOM05D000692 ORTHO05D000533 8.3e-08 60.1 54 48.1
Cpa.g.sc166.9 Carica papaya HOM05D000692 ORTHO05D000533 8.3e-08 60.1 54 50.0
Sc17g0004920 Simmondsia chinensis HOM05D000692 ORTHO05D000533 8.3e-08 60.1 63 42.9
HPP92_026584 Vanilla planifolia HOM05D000692 ORTHO05D000533 8.3e-08 60.1 55 45.5
Gohir.D06G142400 Gossypium hirsutum HOM05D000692 ORTHO05D000533 1.1e-07 59.7 55 47.3
HPP92_002849 Vanilla planifolia HOM05D000692 ORTHO05D000533 1.1e-07 59.7 52 48.1
BcaC03g16840 Brassica carinata HOM05D000692 ORTHO05D000533 1.4e-07 59.3 56 53.6
BcaC06g31488 Brassica carinata HOM05D000692 ORTHO05D000533 1.4e-07 59.3 54 44.4
C02p47190 Brassica napus HOM05D000692 ORTHO05D000533 1.4e-07 59.3 56 53.6
BolC2t10763H Brassica oleracea HOM05D000692 ORTHO05D000533 1.4e-07 59.3 56 53.6
Thhalv10001064m.g Eutrema salsugineum HOM05D000692 ORTHO05D000533 1.4e-07 59.3 56 51.8
Os07g0120650 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 1.4e-07 59.3 55 45.5
RcHm_v2.0_Chr5g0014081 Rosa chinensis HOM05D000692 ORTHO05D000533 1.4e-07 59.3 54 48.1
Thecc.06G151000 Theobroma cacao HOM05D000692 ORTHO05D000533 1.4e-07 59.3 55 45.5
HPP92_013388 Vanilla planifolia HOM05D000692 ORTHO05D000533 1.4e-07 59.3 55 45.5
HPP92_026587 Vanilla planifolia HOM05D000692 ORTHO05D000533 1.4e-07 59.3 55 43.6
Zm00001eb067880 Zea mays HOM05D000692 ORTHO05D000533 1.4e-07 59.3 56 46.4
BolC9t55709H Brassica oleracea HOM05D000692 ORTHO05D000533 1.9e-07 58.9 56 51.8
FvH4_3g05580 Fragaria vesca HOM05D000692 ORTHO05D000533 1.9e-07 58.9 56 50.0
FAN16G1626 Fragaria x ananassa HOM05D000692 ORTHO05D000533 1.9e-07 58.9 56 50.0
FAN25G2317 Fragaria x ananassa HOM05D000692 ORTHO05D000533 1.9e-07 58.9 56 50.0
Prupe.4G080300 Prunus persica HOM05D000692 ORTHO05D000533 1.9e-07 58.9 55 45.5
VMungo0540G0302 Vigna mungo HOM05D000692 ORTHO05D000533 1.9e-07 58.9 74 39.2
A02p29800 Brassica napus HOM05D000692 ORTHO05D000533 2.4e-07 58.5 56 51.8
BraA02t08001Z Brassica rapa HOM05D000692 ORTHO05D000533 2.4e-07 58.5 56 51.8
Gohir.A06G137200 Gossypium hirsutum HOM05D000692 ORTHO05D000533 2.4e-07 58.5 55 47.3
Gorai.012G113800 Gossypium raimondii HOM05D000692 ORTHO05D000533 2.4e-07 58.5 55 45.5
BcaC04g21716 Brassica carinata HOM05D000692 ORTHO05D000533 3.2e-07 58.2 56 51.8
C09p28340 Brassica napus HOM05D000692 ORTHO05D000533 3.2e-07 58.2 56 51.8
Lsat_1_v5_gn_8_116801 Lactuca sativa HOM05D000692 ORTHO05D000533 3.2e-07 58.2 55 43.6
A09p22190 Brassica napus HOM05D000692 ORTHO05D000533 4.1e-07 57.8 56 50.0
BraA09t37823Z Brassica rapa HOM05D000692 ORTHO05D000533 4.1e-07 57.8 56 50.0
CARHR175560 Cardamine hirsuta HOM05D000692 ORTHO05D000533 4.1e-07 57.8 56 50.0
Duzib251G0923 Durio zibethinus HOM05D000692 ORTHO05D000533 4.1e-07 57.8 55 43.6
Gohir.D04G130200 Gossypium hirsutum HOM05D000692 ORTHO05D000533 4.1e-07 57.8 55 45.5
Os07g0118250 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 4.1e-07 57.8 55 45.5
Os07g0120000 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 4.1e-07 57.8 55 45.5
Sed0013953 Sechium edule HOM05D000692 ORTHO05D000533 4.1e-07 57.8 55 45.5
CAN.G222.28 Capsicum annuum HOM05D000692 ORTHO05D000533 5.4e-07 57.4 48 47.9
Lj6g0016780 Lotus japonicus HOM05D000692 ORTHO05D000533 5.4e-07 57.4 50 48.0
HPP92_026575 Vanilla planifolia HOM05D000692 ORTHO05D000533 5.4e-07 57.4 55 40.0
HPP92_026576 Vanilla planifolia HOM05D000692 ORTHO05D000533 5.4e-07 57.4 55 40.0
Ca_00543_v3 Cicer arietinum L. HOM05D000692 ORTHO05D000533 7.0e-07 57.0 52 48.1
CsaV3_6G051720 Cucumis sativus L. HOM05D000692 ORTHO05D000533 9.2e-07 56.6 55 45.5
Duzib160G0381 Durio zibethinus HOM05D000692 ORTHO05D000533 9.2e-07 56.6 55 41.8
Migut.H01363 Erythranthe guttata HOM05D000692 ORTHO05D000533 9.2e-07 56.6 54 42.6
Gohir.A04G090100 Gossypium hirsutum HOM05D000692 ORTHO05D000533 9.2e-07 56.6 55 43.6
TPR.G26668 Trifolium pratense HOM05D000692 ORTHO05D000533 9.2e-07 56.6 52 48.1
HPP92_013401 Vanilla planifolia HOM05D000692 ORTHO05D000533 9.2e-07 56.6 55 43.6
ClCG01G024600 Citrullus lanatus HOM05D000692 ORTHO05D000533 1.2e-06 56.2 55 41.8
Glyma.15G094200 Glycine max HOM05D000692 ORTHO05D000533 1.2e-06 56.2 55 41.8
MD10G1262400 Malus domestica HOM05D000692 ORTHO05D000533 1.2e-06 56.2 55 43.6
Os01g0210600 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 1.2e-06 56.2 55 45.5
Phvul.006G164700 Phaseolus vulgaris HOM05D000692 ORTHO05D000533 1.2e-06 56.2 55 47.3
HPP92_026585 Vanilla planifolia HOM05D000692 ORTHO05D000533 1.2e-06 56.2 53 45.3
MBI10_g43703_MAGBIO Magnolia biondii HOM05D000692 ORTHO05D000533 1.6e-06 55.8 52 44.2
Gorai.010G166200 Gossypium raimondii HOM05D000692 ORTHO05D000533 2.0e-06 55.5 55 45.5
Lalb_Chr18g0055451 Lupinus albus HOM05D000692 ORTHO05D000533 2.0e-06 55.5 55 47.3
SEGI_21896 Sequoiadendron giganteum HOM05D000692 ORTHO05D000533 2.0e-06 55.5 55 45.5
Gohir.D04G130233 Gossypium hirsutum HOM05D000692 ORTHO05D000533 2.7e-06 55.1 54 44.4
MD05G1284100 Malus domestica HOM05D000692 ORTHO05D000533 2.7e-06 55.1 55 41.8
Psat0s2223g0120 Pisum sativum HOM05D000692 ORTHO05D000533 2.7e-06 55.1 53 47.2
MELO3C007135.2 Cucumis melo HOM05D000692 ORTHO05D000533 3.5e-06 54.7 44 50.0
Duzib235G1535 Durio zibethinus HOM05D000692 ORTHO05D000533 3.5e-06 54.7 55 41.8
Os11g0594800 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 4.6e-06 54.3 55 41.8
PSO017G6132 Papaver somniferum HOM05D000692 ORTHO05D000533 4.6e-06 54.3 39 59.0
ATR0693G458 Amborella trichopoda HOM05D000692 ORTHO05D000533 6.0e-06 53.9 56 44.6
Aqoxy1G01709 Aquilegia oxysepala HOM05D000692 ORTHO05D000533 6.0e-06 53.9 55 40.0
Duzib235G0582 Durio zibethinus HOM05D000692 ORTHO05D000533 6.0e-06 53.9 55 41.8
Medtr2g019480 Medicago truncatula HOM05D000692 ORTHO05D000533 6.0e-06 53.9 52 46.2
Os06g0538900 Oryza sativa ssp. japonica HOM05D000692 ORTHO05D000533 6.0e-06 53.9 55 41.8
THA.LOC104820708 Tarenaya hassleriana HOM05D000692 ORTHO05D000533 6.0e-06 53.9 52 44.2
Gorai.012G113900 Gossypium raimondii HOM05D000692 ORTHO05D000533 7.8e-06 53.5 47 48.9
Psat1g017880 Pisum sativum HOM05D000692 ORTHO05D000533 7.8e-06 53.5 54 46.3
SEGI_32876 Sequoiadendron giganteum HOM05D000692 ORTHO05D000533 7.8e-06 53.5 46 47.8


User provided reference genes

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