Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 8.2e-274 946.4 473 100.0
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 2.6e-251 871.7 474 92.0
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 5.9e-248 860.5 473 90.5
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 6.6e-247 857.1 473 90.1
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 6.8e-244 847.0 475 90.7
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 1.6e-237 825.9 479 87.1
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.8e-227 790.0 476 85.9
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.9e-212 740.3 478 75.5
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.5e-211 739.6 480 75.2
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 2.2e-210 735.7 490 74.3
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 1.6e-208 729.6 473 75.9
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.0e-207 726.9 482 73.2
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 1.3e-207 726.5 481 73.6
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 1.3e-207 726.5 481 73.6
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 1.7e-207 726.1 473 74.2
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 3.0e-207 725.3 474 74.9
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 6.6e-207 724.2 493 72.2
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 8.7e-207 723.8 479 73.1
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.9e-206 722.6 485 73.8
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 2.5e-206 722.2 473 74.2
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 3.3e-206 721.8 479 72.7
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 7.3e-206 720.7 476 73.5
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.3e-205 719.9 480 72.7
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.1e-205 719.2 473 75.1
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 2.8e-205 718.8 479 74.1
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.8e-205 718.0 475 73.7
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 6.2e-205 717.6 477 73.4
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 1.1e-204 716.8 477 72.5
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.8e-204 716.1 480 72.7
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 2.4e-204 715.7 473 73.8
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 3.1e-204 715.3 479 73.5
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 3.1e-204 715.3 480 73.1
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 4.0e-204 714.9 473 73.4
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 9.0e-204 713.8 480 71.7
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.2e-203 713.4 482 71.4
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.2e-203 713.4 483 72.0
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.5e-203 713.0 476 72.9
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 1.5e-203 713.0 480 73.5
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.6e-203 712.2 483 71.6
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.3e-202 709.9 509 69.4
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.7e-202 709.5 481 73.4
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.2e-202 709.1 473 74.4
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 2.9e-202 708.8 481 71.1
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 6.4e-202 707.6 482 71.4
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 4.2e-201 704.9 483 72.7
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 6.0e-200 701.0 480 70.6
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 1.8e-199 699.5 481 71.9
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.8e-199 699.5 479 69.5
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 3.9e-199 698.4 487 71.0
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 1.1e-198 696.8 481 70.1
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.1e-198 696.8 485 70.3
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 1.5e-198 696.4 476 73.3
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.9e-198 696.0 480 70.0
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.5e-198 695.7 487 70.8
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 2.5e-198 695.7 480 70.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.3e-198 694.9 477 70.0
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 9.6e-198 693.7 480 70.0
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 1.6e-197 693.0 499 69.3
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 2.1e-197 692.6 480 71.2
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 2.1e-197 692.6 480 70.4
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 2.1e-197 692.6 480 70.0
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 2.4e-196 689.1 482 71.0
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.1e-196 688.7 480 69.8
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 5.3e-196 688.0 480 69.8
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 2.0e-195 686.0 480 69.0
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 9.9e-195 683.7 480 69.4
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 1.3e-194 683.3 473 70.4
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.2e-194 682.6 480 69.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 6.4e-194 681.0 480 68.8
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 1.1e-193 680.2 480 69.4
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 3.2e-193 678.7 480 67.9
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 5.5e-193 677.9 474 68.6
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 7.1e-193 677.6 484 69.6
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 2.7e-192 675.6 480 66.5
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 3.5e-192 675.2 481 67.6
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 7.9e-192 674.1 517 66.2
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 8.2e-189 664.1 474 68.1
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 5.3e-188 661.4 438 71.9
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.2e-187 660.2 477 66.9
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 4.5e-187 658.3 474 67.1
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 5.8e-187 657.9 458 71.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 1.3e-186 656.8 477 66.2
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 6.5e-186 654.4 490 67.1
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 1.9e-185 652.9 487 66.9
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 2.5e-185 652.5 477 66.5
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 3.2e-185 652.1 474 66.7
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 5.5e-185 651.4 473 66.4
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 2.1e-184 649.4 507 63.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.1e-184 649.4 449 70.6
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 2.7e-184 649.0 474 66.2
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 7.9e-184 647.5 472 65.5
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 1.0e-183 647.1 474 65.8
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 1.0e-183 647.1 474 66.2
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 1.3e-183 646.7 474 66.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 1.3e-183 646.7 474 66.2
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 1.8e-183 646.4 482 65.4
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.7e-183 644.4 415 73.5
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.9e-182 642.9 488 65.0
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 3.7e-181 638.6 479 65.3
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 4.8e-181 638.3 474 65.2
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 1.4e-180 636.7 498 63.3
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 5.0e-178 628.2 432 70.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 1.6e-176 623.2 552 60.7
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 2.1e-176 622.9 492 63.2
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 3.6e-176 622.1 572 56.1
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 8.2e-173 610.9 474 63.5
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 2.4e-172 609.4 429 69.2
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 6.9e-172 607.8 415 72.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.2e-169 599.0 524 59.5
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 8.2e-165 584.3 482 62.2
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 1.3e-162 577.0 470 61.1
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.9e-161 573.2 489 57.7
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 3.2e-161 572.4 486 58.8
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 9.7e-158 560.8 423 66.7
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.9e-154 549.3 476 55.3
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 5.9e-147 525.0 413 64.4
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-136 490.3 490 54.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.5e-134 483.8 360 66.9
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 1.5e-129 467.2 484 52.9
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.4e-103 380.9 597 38.4
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 6.4e-93 345.5 253 61.3
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 4.6e-91 339.3 254 66.5
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.0e-90 338.2 523 40.9
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 2.8e-88 330.1 215 77.2
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 7.6e-78 295.4 182 69.8
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 4.2e-76 289.7 540 36.9
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 4.5e-70 269.6 386 43.3
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.7e-69 267.7 210 58.1
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 2.9e-69 266.9 255 51.8
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.2e-67 261.5 184 75.5
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.2e-61 240.7 175 62.3
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.1e-55 221.9 476 33.4
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 2.6e-54 217.2 260 44.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 4.2e-52 209.9 435 34.7
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.9e-45 187.2 166 54.8
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 7.0e-39 166.0 448 28.3
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 1.2e-38 165.2 376 32.4
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.1e-36 158.7 446 28.5
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.3e-34 151.0 225 43.1
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 5.3e-31 139.8 220 37.7
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 6.6e-21 106.3 187 43.9
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 9.2e-15 85.9 133 38.3
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.1e-12 79.0 66 63.6
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 4.3e-12 77.0 66 63.6
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 9.5e-12 75.9 66 57.6
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 8.0e-11 72.8 69 56.5
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 5.2e-10 70.1 68 55.9
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-09 68.9 51 56.9
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 1.2e-09 68.9 64 53.1
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 1.4e-07 62.0 70 48.6
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.6e-06 57.0 83 43.4


User provided reference genes

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