Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 1.3e-282 975.7 485 100.0
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 1.3e-269 932.6 482 95.0
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 5.9e-267 923.7 482 94.2
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 1.9e-265 918.7 482 93.6
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 4.2e-265 917.5 482 94.0
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 7.2e-265 916.8 482 93.4
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 2.6e-259 898.3 484 91.7
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 1.9e-233 812.4 483 82.4
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 3.2e-233 811.6 483 82.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 6.1e-232 807.4 483 81.2
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 8.0e-232 807.0 483 81.8
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 1.8e-231 805.8 483 82.2
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 8.8e-231 803.5 483 81.6
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.5e-230 802.7 483 81.0
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 9.8e-230 800.0 482 80.9
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.8e-229 798.5 483 80.7
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 1.6e-227 792.7 484 80.0
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 5.9e-227 790.8 482 80.1
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 7.7e-227 790.4 484 80.2
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 7.7e-227 790.4 484 79.8
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 1.3e-226 789.6 483 81.0
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 1.7e-226 789.3 485 80.6
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 3.8e-226 788.1 483 81.2
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 3.8e-226 788.1 482 79.9
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 6.5e-226 787.3 485 79.2
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 3.2e-225 785.0 482 79.0
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.2e-224 783.1 485 80.6
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 2.1e-224 782.3 484 78.9
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 2.1e-224 782.3 484 77.7
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 2.1e-224 782.3 483 79.5
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 8.0e-224 780.4 483 80.1
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 8.0e-224 780.4 483 80.1
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 1.8e-223 779.2 483 79.1
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.8e-223 779.2 483 79.5
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 3.0e-223 778.5 483 79.7
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 3.0e-223 778.5 482 78.2
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 5.2e-223 777.7 483 79.7
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 5.2e-223 777.7 483 78.3
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 6.8e-223 777.3 482 78.2
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 4.4e-222 774.6 514 75.3
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 5.7e-222 774.2 483 78.5
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 7.5e-222 773.9 483 79.5
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 1.3e-221 773.1 490 78.2
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.7e-221 772.7 482 77.4
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.7e-221 771.5 483 79.1
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 3.7e-221 771.5 490 78.2
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 4.9e-221 771.2 457 82.9
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 6.3e-221 770.8 483 78.9
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 1.1e-220 770.0 482 77.6
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-220 770.0 484 78.5
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 1.1e-220 770.0 485 79.0
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.4e-220 769.6 483 78.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 1.4e-220 769.6 483 78.3
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.8e-220 769.2 483 78.9
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 1.8e-220 769.2 481 78.4
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 2.4e-220 768.8 484 78.3
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 3.1e-220 768.5 483 78.5
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 4.1e-220 768.1 483 78.5
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 4.1e-220 768.1 484 77.9
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 5.4e-220 767.7 483 78.9
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 5.4e-220 767.7 486 78.8
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 1.2e-219 766.5 483 78.5
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 1.6e-219 766.1 483 77.4
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 2.7e-219 765.4 483 77.6
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 3.5e-219 765.0 481 77.3
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 3.5e-219 765.0 484 77.1
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 3.5e-219 765.0 484 77.7
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 3.5e-219 765.0 481 78.2
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 3.5e-219 765.0 483 78.7
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 4.5e-219 764.6 421 86.7
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 1.5e-217 759.6 482 77.2
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.5e-217 758.8 483 79.1
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 4.3e-217 758.1 482 77.2
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 5.6e-217 757.7 484 76.9
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 7.3e-217 757.3 484 76.9
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 1.6e-216 756.1 484 76.7
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 1.0e-215 753.4 484 78.9
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 1.4e-215 753.1 485 76.9
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.3e-215 752.3 484 76.7
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 3.4e-214 748.4 482 77.2
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 7.5e-214 747.3 484 77.7
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 3.7e-213 745.0 489 76.9
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 3.7e-213 745.0 484 77.1
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 1.4e-212 743.0 488 77.5
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 1.8e-212 742.7 485 77.1
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 9.2e-212 740.3 482 74.9
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 1.6e-211 739.6 493 76.7
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 1.6e-211 739.6 493 76.7
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 5.9e-211 737.6 485 76.9
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 2.5e-209 732.3 394 88.3
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 3.3e-209 731.9 394 88.3
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 9.5e-209 730.3 391 88.5
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 2.3e-207 725.7 484 75.0
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 5.2e-207 724.5 485 75.1
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 5.2e-207 724.5 484 75.6
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 8.9e-207 723.8 484 75.8
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 7.5e-206 720.7 484 75.6
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 3.9e-202 708.4 486 73.0
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 9.5e-201 703.7 435 79.1
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 8.3e-197 690.6 430 75.6
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 3.3e-193 678.7 411 77.9
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 1.6e-192 676.4 493 66.9
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 6.2e-192 674.5 400 79.8
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 1.4e-191 673.3 453 74.6
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 2.3e-191 672.5 389 79.7
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 7.1e-188 661.0 484 70.9
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 5.3e-175 618.2 401 72.6
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 1.2e-174 617.1 482 66.6
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 2.9e-173 612.5 383 77.0
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.4e-172 609.4 431 72.2
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 8.1e-168 594.3 389 69.4
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 6.9e-167 591.3 398 67.1
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 2.1e-155 553.1 289 92.0
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 6.0e-155 551.6 289 91.3
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 2.0e-137 493.4 306 77.5
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 4.5e-134 482.3 341 69.8
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.4e-105 386.0 237 78.9
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.4e-97 359.8 203 81.3
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 1.8e-82 310.8 172 85.5
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.6e-62 243.0 196 62.8
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.9e-60 237.7 139 82.7
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 4.8e-59 233.0 135 83.0
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 2.6e-57 227.3 130 80.8
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 3.4e-49 200.3 140 74.3
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 8.4e-40 169.1 158 55.7
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 9.7e-36 155.6 94 80.9
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 5.5e-31 139.8 105 65.7
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 8.0e-14 82.8 59 67.8
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 5.3e-10 70.1 125 35.2
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.0e-08 65.9 132 30.3
Ciclev10020907m.g Citrus clementina HOM05D000776 ORTHO05D001624 2.9e-08 64.3 158 30.4
Zm00001eb319250 Zea mays HOM05D000776 ORTHO05D001624 1.1e-07 62.4 165 29.7
BraA01t02620Z Brassica rapa HOM05D000776 ORTHO05D001624 3.2e-07 60.8 163 25.2
TPR.G12967 Trifolium pratense HOM05D000776 ORTHO05D001624 3.2e-07 60.8 168 28.0
Lj2C194T17 Lonicera japonica HOM05D000776 ORTHO05D001624 5.5e-07 60.1 154 27.3
Lalb_Chr05g0224991 Lupinus albus HOM05D000776 ORTHO05D001624 5.5e-07 60.1 160 26.9
HPP92_013398 Vanilla planifolia HOM05D000776 ORTHO05D001624 9.4e-07 59.3 127 29.1
Atru.chr9.1565 Acer truncatum HOM05D000776 ORTHO05D001624 1.2e-06 58.9 162 27.8
Psat0s1641g0040 Pisum sativum HOM05D000776 ORTHO05D001624 1.2e-06 58.9 155 25.8
Psat1g087000 Pisum sativum HOM05D000776 ORTHO05D001624 1.2e-06 58.9 155 25.8
Psat1g087240 Pisum sativum HOM05D000776 ORTHO05D001624 2.7e-06 57.8 159 27.0
Psat7g036120 Pisum sativum HOM05D000776 ORTHO05D001624 2.7e-06 57.8 133 27.8
Ah.12g057480 Amaranthus hybridus HOM05D000776 ORTHO05D001624 3.6e-06 57.4 164 26.8
FAN08G0150 Fragaria x ananassa HOM05D000776 ORTHO05D001624 4.7e-06 57.0 129 27.9
PSO782G1764 Papaver somniferum HOM05D000776 ORTHO05D001624 4.7e-06 57.0 128 28.9
EL10Ac5g12750 Beta vulgaris HOM05D000776 ORTHO05D001624 6.1e-06 56.6 166 26.5
PSO478G2983 Papaver somniferum HOM05D000776 ORTHO05D001624 6.1e-06 56.6 128 28.1
TPR.G5954 Trifolium pratense HOM05D000776 ORTHO05D001624 6.1e-06 56.6 153 26.1


User provided reference genes

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