Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G895.15 Capsicum annuum HOM05D001357 ORTHO05D043432 2.7e-51 204.9 94 100.0
CAN.G1443.8 Capsicum annuum HOM05D001357 ORTHO05D043432 3.2e-36 154.8 75 93.3
Duzib205G0119 Durio zibethinus HOM05D001357 ORTHO05D001224 2.5e-12 75.5 56 55.4
COL.COLO4_17067 Corchorus olitorius HOM05D001357 ORTHO05D001224 7.2e-12 73.9 55 56.4
Peaxi162Scf00695g00516 Petunia axillaris HOM05D001357 ORTHO05D001224 1.2e-11 73.2 55 63.6
CSS0039848 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 2.1e-11 72.4 55 60.0
CSS0044588 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 2.1e-11 72.4 55 60.0
Gorai.003G180700 Gossypium raimondii HOM05D001357 ORTHO05D001224 2.1e-11 72.4 55 56.4
GSVIVG01013185001 Vitis vinifera HOM05D001357 ORTHO05D001224 2.1e-11 72.4 55 56.4
Gohir.A12G209300 Gossypium hirsutum HOM05D001357 ORTHO05D001224 2.7e-11 72.0 55 56.4
Gohir.D12G212000 Gossypium hirsutum HOM05D001357 ORTHO05D001224 2.7e-11 72.0 55 56.4
Gorai.008G227600 Gossypium raimondii HOM05D001357 ORTHO05D001224 2.7e-11 72.0 55 56.4
Sopen08g025680 Solanum pennellii HOM05D001357 ORTHO05D001224 3.6e-11 71.6 49 63.3
vmacro00340 Vaccinium macrocarpon HOM05D001357 ORTHO05D001224 3.6e-11 71.6 55 60.0
MELO3C013861.2 Cucumis melo HOM05D001357 ORTHO05D001224 4.6e-11 71.2 55 56.4
Solyc08g077100.3 Solanum lycopersicum HOM05D001357 ORTHO05D001224 4.6e-11 71.2 49 61.2
Gohir.A03G001900 Gossypium hirsutum HOM05D001357 ORTHO05D001224 6.1e-11 70.9 55 54.5
Duzib084G0022 Durio zibethinus HOM05D001357 ORTHO05D001224 7.9e-11 70.5 55 54.5
Gohir.D03G170400 Gossypium hirsutum HOM05D001357 ORTHO05D001224 7.9e-11 70.5 55 54.5
Lalb_Chr09g0323871 Lupinus albus HOM05D001357 ORTHO05D001224 1.0e-10 70.1 55 54.5
CsaV3_3G001870 Cucumis sativus L. HOM05D001357 ORTHO05D001224 1.4e-10 69.7 55 54.5
Nitab4.5_0000535g0020 Nicotiana tabacum HOM05D001357 ORTHO05D001224 1.4e-10 69.7 49 65.3
Nitab4.5_0000804g0050 Nicotiana tabacum HOM05D001357 ORTHO05D001224 1.4e-10 69.7 49 65.3
Rhsim11G0013300 Rhododendron simsii HOM05D001357 ORTHO05D001224 1.4e-10 69.7 55 58.2
QL12p006175 Quercus lobata HOM05D001357 ORTHO05D001224 1.8e-10 69.3 55 54.5
MSTRG.11994 Avicennia marina HOM05D001357 ORTHO05D001224 2.3e-10 68.9 55 52.7
Sc22g0001470 Simmondsia chinensis HOM05D001357 ORTHO05D001224 2.3e-10 68.9 56 55.4
MSTRG.25595 Avicennia marina HOM05D001357 ORTHO05D001224 6.7e-10 67.4 53 50.9
CiPaw.12G062100 Carya illinoinensis HOM05D001357 ORTHO05D001224 6.7e-10 67.4 55 54.5
Ciclev10030828m.g Citrus clementina HOM05D001357 ORTHO05D001224 6.7e-10 67.4 55 52.7
Peaxi162Scf00102g00519 Petunia axillaris HOM05D001357 ORTHO05D001224 6.7e-10 67.4 55 58.2
Sed0026328 Sechium edule HOM05D001357 ORTHO05D001224 6.7e-10 67.4 55 54.5
Lsat_1_v5_gn_3_16741 Lactuca sativa HOM05D001357 ORTHO05D001224 8.8e-10 67.0 55 52.7
ClCG10G001770 Citrullus lanatus HOM05D001357 ORTHO05D001224 1.1e-09 66.6 55 50.9
Manes.15G169400 Manihot esculenta HOM05D001357 ORTHO05D001224 1.1e-09 66.6 55 50.9
Sabra01G0112600 Salix brachista HOM05D001357 ORTHO05D001224 1.1e-09 66.6 55 49.1
Prupe.5G040000 Prunus persica HOM05D001357 ORTHO05D001224 1.5e-09 66.2 55 52.7
RcHm_v2.0_Chr7g0209211 Rosa chinensis HOM05D001357 ORTHO05D001224 1.5e-09 66.2 55 52.7
Sabra03G0060000 Salix brachista HOM05D001357 ORTHO05D001224 1.5e-09 66.2 55 50.9
FAN04G3086 Fragaria x ananassa HOM05D001357 ORTHO05D001224 2.0e-09 65.9 55 52.7
FAN08G0193 Fragaria x ananassa HOM05D001357 ORTHO05D001224 2.0e-09 65.9 55 52.7
Lj2A242T74 Lonicera japonica HOM05D001357 ORTHO05D001224 2.0e-09 65.9 55 50.9
FvH4_5g21710 Fragaria vesca HOM05D001357 ORTHO05D001224 2.5e-09 65.5 55 50.9
FAN18G0885 Fragaria x ananassa HOM05D001357 ORTHO05D001224 2.5e-09 65.5 55 50.9
MD06G1032100 Malus domestica HOM05D001357 ORTHO05D001224 2.5e-09 65.5 55 52.7
Potri.003G090000 Populus trichocarpa HOM05D001357 ORTHO05D001224 2.5e-09 65.5 55 49.1
CSS0024345 Camellia sinensis var. sinensis HOM05D001357 ORTHO05D001224 3.3e-09 65.1 55 54.5
FAN13G3282 Fragaria x ananassa HOM05D001357 ORTHO05D001224 4.3e-09 64.7 55 50.9
Glyma.05G112600 Glycine max HOM05D001357 ORTHO05D001224 4.3e-09 64.7 57 45.6
CiPaw.11G091600 Carya illinoinensis HOM05D001357 ORTHO05D001224 5.7e-09 64.3 55 50.9
Hma1.2p1_0991F.1_g244975 Hydrangea macrophylla HOM05D001357 ORTHO05D001224 5.7e-09 64.3 55 50.9
Hma1.2p1_2785F.1_g328450 Hydrangea macrophylla HOM05D001357 ORTHO05D001224 5.7e-09 64.3 55 50.9
Sc07g0008760 Simmondsia chinensis HOM05D001357 ORTHO05D001224 5.7e-09 64.3 55 49.1
Phvul.003G229800 Phaseolus vulgaris HOM05D001357 ORTHO05D001224 7.4e-09 63.9 68 41.2
Glyma.17G154400 Glycine max HOM05D001357 ORTHO05D001224 1.3e-08 63.2 55 45.5
TAR629G2684 Trochodendron aralioides HOM05D001357 ORTHO05D001224 1.3e-08 63.2 48 54.2
Ca_22065_v3 Cicer arietinum L. HOM05D001357 ORTHO05D001224 1.7e-08 62.8 55 49.1
Potri.001G144200 Populus trichocarpa HOM05D001357 ORTHO05D001224 1.7e-08 62.8 55 47.3
Lj4g0020023 Lotus japonicus HOM05D001357 ORTHO05D001224 2.2e-08 62.4 55 47.3
Atru.chr6.1746 Acer truncatum HOM05D001357 ORTHO05D001224 2.8e-08 62.0 55 47.3
Atru.chr6.1749 Acer truncatum HOM05D001357 ORTHO05D001224 2.8e-08 62.0 55 47.3
Cc08_g02460 Coffea canephora HOM05D001357 ORTHO05D001224 2.8e-08 62.0 55 47.3
Cfa012414 Carpinus fangiana HOM05D001357 ORTHO05D001224 3.7e-08 61.6 55 47.3
Thhalv10010162m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 3.7e-08 61.6 60 43.3
Oeu049548.1 Olea europaea HOM05D001357 ORTHO05D001224 3.7e-08 61.6 55 52.7
Lalb_Chr05g0213991 Lupinus albus HOM05D001357 ORTHO05D001224 4.8e-08 61.2 55 45.5
VMungo0251G1991 Vigna mungo HOM05D001357 ORTHO05D001224 4.8e-08 61.2 55 47.3
Carub.0001s3094 Capsella rubella HOM05D001357 ORTHO05D001224 6.3e-08 60.8 64 45.3
Thhalv10016336m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 6.3e-08 60.8 60 43.3
Lj8C291T15 Lonicera japonica HOM05D001357 ORTHO05D001224 6.3e-08 60.8 58 41.4
HanXRQChr06g0167351 Helianthus annuus HOM05D001357 ORTHO05D001224 1.1e-07 60.1 55 43.6
Nn1g00569 Nelumbo nucifera HOM05D001357 ORTHO05D001224 1.1e-07 60.1 41 63.4
Psat4g079320 Pisum sativum HOM05D001357 ORTHO05D001224 1.1e-07 60.1 55 45.5
arahy.Tifrunner.gnm1.ann1.L5SQ1T Arachis hypogaea HOM05D001357 ORTHO05D001224 1.4e-07 59.7 55 45.5
arahy.Tifrunner.gnm1.ann1.WDEP49 Arachis hypogaea HOM05D001357 ORTHO05D001224 1.4e-07 59.7 55 45.5
PGR031G1014 Punica granatum HOM05D001357 ORTHO05D001224 1.4e-07 59.7 55 47.3
Actinidia25953 Actinidia chinensis HOM05D001357 ORTHO05D001224 1.8e-07 59.3 55 50.9
Haze_08262 Corylus avellana HOM05D001357 ORTHO05D001224 1.8e-07 59.3 55 43.6
PSO782G0194 Papaver somniferum HOM05D001357 ORTHO05D001224 1.8e-07 59.3 55 50.9
TPR.G28656 Trifolium pratense HOM05D001357 ORTHO05D001224 2.4e-07 58.9 55 45.5
AL4G31360 Arabidopsis lyrata HOM05D001357 ORTHO05D001224 3.1e-07 58.5 48 52.1
TWI60G0354 Tripterygium wilfordii HOM05D001357 ORTHO05D001224 3.1e-07 58.5 55 45.5
THA.LOC104812745 Tarenaya hassleriana HOM05D001357 ORTHO05D001224 4.1e-07 58.2 48 50.0
AT2G35330 Arabidopsis thaliana HOM05D001357 ORTHO05D001224 5.3e-07 57.8 55 43.6
Eucgr.D02184 Eucalyptus grandis HOM05D001357 ORTHO05D001224 5.3e-07 57.8 55 49.1
Lalb_Chr09g0329481 Lupinus albus HOM05D001357 ORTHO05D001224 5.3e-07 57.8 50 52.0
Lalb_Chr16g0386061 Lupinus albus HOM05D001357 ORTHO05D001224 5.3e-07 57.8 49 53.1
BcaC05g27291 Brassica carinata HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
A09p33680 Brassica napus HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
C05p31970 Brassica napus HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
BolC5t31923H Brassica oleracea HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
BraA09t38917Z Brassica rapa HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
Carub.0004s1702 Capsella rubella HOM05D001357 ORTHO05D001224 6.9e-07 57.4 48 50.0
PGSC0003DMG400020519 Solanum tuberosum HOM05D001357 ORTHO05D001224 6.9e-07 57.4 60 46.7
Actinidia03385 Actinidia chinensis HOM05D001357 ORTHO05D001224 9.1e-07 57.0 70 42.9
BcaB07g32948 Brassica carinata HOM05D001357 ORTHO05D001224 9.1e-07 57.0 48 47.9
Glyma.11G042600 Glycine max HOM05D001357 ORTHO05D001224 1.5e-06 56.2 57 40.4
Medtr4g098560 Medicago truncatula HOM05D001357 ORTHO05D001224 1.5e-06 56.2 48 45.8
PSO063G7676 Papaver somniferum HOM05D001357 ORTHO05D001224 1.5e-06 56.2 55 49.1
THA.LOC104807960 Tarenaya hassleriana HOM05D001357 ORTHO05D001224 1.5e-06 56.2 48 47.9
CARHR031980 Cardamine hirsuta HOM05D001357 ORTHO05D001224 2.0e-06 55.8 48 50.0
Sopen08g002950 Solanum pennellii HOM05D001357 ORTHO05D001224 2.0e-06 55.8 55 49.1
AL1G46780 Arabidopsis lyrata HOM05D001357 ORTHO05D001224 3.4e-06 55.1 48 50.0
AT1G32530 Arabidopsis thaliana HOM05D001357 ORTHO05D001224 3.4e-06 55.1 48 50.0
CARHR129480 Cardamine hirsuta HOM05D001357 ORTHO05D001224 4.5e-06 54.7 55 41.8
ECA232G1637 Erigeron canadensis HOM05D001357 ORTHO05D001224 4.5e-06 54.7 42 54.8
Migut.A00780 Erythranthe guttata HOM05D001357 ORTHO05D001224 4.5e-06 54.7 55 41.8
Thhalv10006944m.g Eutrema salsugineum HOM05D001357 ORTHO05D001224 4.5e-06 54.7 48 47.9
Sp4g17530 Schrenkiella parvula HOM05D001357 ORTHO05D001224 5.9e-06 54.3 48 45.8
Aa31LG9G15340 Aethionema arabicum HOM05D001357 ORTHO05D001224 7.7e-06 53.9 48 47.9
Solyc08g006980.3 Solanum lycopersicum HOM05D001357 ORTHO05D001224 7.7e-06 53.9 55 47.3
SGA_v2.0_scaffold253G45130 Striga asiatica HOM05D001357 ORTHO05D001224 7.7e-06 53.9 60 38.3


User provided reference genes

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