Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G890.77 Capsicum annuum HOM05D003687 ORTHO05D004571 1.1e-192 676.4 331 100.0
PGSC0003DMG400001524 Solanum tuberosum HOM05D003687 ORTHO05D004571 1.1e-179 633.3 331 92.7
Sopen02g027630 Solanum pennellii HOM05D003687 ORTHO05D004571 9.1e-179 630.2 331 92.1
Solyc02g082830.3 Solanum lycopersicum HOM05D003687 ORTHO05D004571 2.7e-178 628.6 331 91.8
Nitab4.5_0000702g0080 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.2e-175 619.8 331 90.6
Peaxi162Scf01446g00005 Petunia axillaris HOM05D003687 ORTHO05D004571 2.8e-172 608.6 331 87.9
CANSAT25G3704 Cannabis sativa HOM05D003687 ORTHO05D004571 2.7e-170 602.1 331 88.2
Lj4P233T12 Lonicera japonica HOM05D003687 ORTHO05D004571 1.3e-169 599.7 331 87.0
Ca_19449_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 2.3e-169 599.0 331 87.0
TAR628G0600 Trochodendron aralioides HOM05D003687 ORTHO05D004571 3.8e-169 598.2 331 87.0
CSS0042676 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.1e-168 596.7 331 86.4
Psat0s1725g0080 Pisum sativum HOM05D003687 ORTHO05D004571 2.5e-168 595.5 331 86.4
Medtr8g074010 Medicago truncatula HOM05D003687 ORTHO05D004571 9.5e-168 593.6 331 86.7
Lalb_Chr16g0377261 Lupinus albus HOM05D003687 ORTHO05D004571 1.2e-167 593.2 331 86.7
TPR.G18309 Trifolium pratense HOM05D003687 ORTHO05D004571 2.8e-167 592.0 331 85.8
TAR376G1076 Trochodendron aralioides HOM05D003687 ORTHO05D004571 3.6e-167 591.7 331 85.8
Ca_24964_v3 Cicer arietinum L. HOM05D003687 ORTHO05D004571 4.7e-167 591.3 333 85.9
Cc07_g11670 Coffea canephora HOM05D003687 ORTHO05D004571 6.1e-167 590.9 329 85.7
ClCG10G000330 Citrullus lanatus HOM05D003687 ORTHO05D004571 8.0e-167 590.5 331 87.0
Lsat_1_v5_gn_8_23040 Lactuca sativa HOM05D003687 ORTHO05D004571 8.0e-167 590.5 331 86.7
Lalb_Chr05g0211911 Lupinus albus HOM05D003687 ORTHO05D004571 1.0e-166 590.1 331 86.4
Hma1.2p1_0300F.1_g118150 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 2.3e-166 589.0 331 85.8
Lalb_Chr09g0321291 Lupinus albus HOM05D003687 ORTHO05D004571 2.3e-166 589.0 331 86.1
Glyma.02G041900 Glycine max HOM05D003687 ORTHO05D004571 3.0e-166 588.6 331 84.0
Lj2g0026838 Lotus japonicus HOM05D003687 ORTHO05D004571 4.0e-166 588.2 331 85.8
PSO339G2900 Papaver somniferum HOM05D003687 ORTHO05D004571 4.0e-166 588.2 331 84.9
PSO063G5755 Papaver somniferum HOM05D003687 ORTHO05D004571 6.8e-166 587.4 331 84.6
SalBow3G3833 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.2e-165 586.6 329 85.4
FAN23G1902 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.5e-165 586.3 331 86.4
FAN28G1596 Fragaria x ananassa HOM05D003687 ORTHO05D004571 2.6e-165 585.5 329 86.6
TPR.G25131 Trifolium pratense HOM05D003687 ORTHO05D004571 2.6e-165 585.5 331 85.8
FvH4_1g10530 Fragaria vesca HOM05D003687 ORTHO05D004571 3.4e-165 585.1 331 86.4
FAN19G1222 Fragaria x ananassa HOM05D003687 ORTHO05D004571 3.4e-165 585.1 331 86.4
MELO3C013732.2 Cucumis melo HOM05D003687 ORTHO05D004571 7.5e-165 583.9 331 85.2
MSTRG.3621 Avicennia marina HOM05D003687 ORTHO05D004571 9.8e-165 583.6 329 83.9
MBI05_g40602_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 9.8e-165 583.6 331 84.0
FAN26G2468 Fragaria x ananassa HOM05D003687 ORTHO05D004571 1.3e-164 583.2 331 86.1
Manes.02G112800 Manihot esculenta HOM05D003687 ORTHO05D004571 1.7e-164 582.8 331 85.5
CsaV3_3G000370 Cucumis sativus L. HOM05D003687 ORTHO05D004571 2.2e-164 582.4 331 85.2
Psat2g150440 Pisum sativum HOM05D003687 ORTHO05D004571 2.2e-164 582.4 331 85.2
RcHm_v2.0_Chr2g0097441 Rosa chinensis HOM05D003687 ORTHO05D004571 2.9e-164 582.0 331 85.8
VMungo1215G1127 Vigna mungo HOM05D003687 ORTHO05D004571 4.9e-164 581.3 331 85.2
THA.LOC104819724 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 6.4e-164 580.9 331 84.6
Atru.chr3.957 Acer truncatum HOM05D003687 ORTHO05D004571 1.1e-163 580.1 331 84.9
Atru.chr3.969 Acer truncatum HOM05D003687 ORTHO05D004571 1.1e-163 580.1 331 84.9
Oeu028610.1 Olea europaea HOM05D003687 ORTHO05D004571 1.1e-163 580.1 329 84.8
Rhsim10G0197900 Rhododendron simsii HOM05D003687 ORTHO05D004571 1.1e-163 580.1 331 84.0
Sed0005072 Sechium edule HOM05D003687 ORTHO05D004571 1.1e-163 580.1 331 85.8
PGR119G1501 Punica granatum HOM05D003687 ORTHO05D004571 1.4e-163 579.7 331 83.4
THA.LOC104807434 Tarenaya hassleriana HOM05D003687 ORTHO05D004571 7.0e-163 577.4 331 84.3
Cpa.g.sc535.4 Carica papaya HOM05D003687 ORTHO05D004571 9.2e-163 577.0 331 84.0
Cfa007065 Carpinus fangiana HOM05D003687 ORTHO05D004571 9.2e-163 577.0 331 84.9
BcaB07g31719 Brassica carinata HOM05D003687 ORTHO05D004571 1.2e-162 576.6 331 83.1
DCAR_030822 Daucus carota HOM05D003687 ORTHO05D004571 1.6e-162 576.2 331 84.9
Phvul.002G115000 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 1.6e-162 576.2 331 84.0
Prupe.7G180700 Prunus persica HOM05D003687 ORTHO05D004571 1.6e-162 576.2 331 84.6
unitig_699.g19680 Utricularia gibba HOM05D003687 ORTHO05D004571 2.0e-162 575.9 329 83.0
Manes.01G153800 Manihot esculenta HOM05D003687 ORTHO05D004571 2.7e-162 575.5 329 84.8
SGA_v2.0_scaffold108G30984 Striga asiatica HOM05D003687 ORTHO05D004571 3.5e-162 575.1 329 83.3
CiPaw.08G180600 Carya illinoinensis HOM05D003687 ORTHO05D004571 4.6e-162 574.7 331 84.0
MD15G1233200 Malus domestica HOM05D003687 ORTHO05D004571 4.6e-162 574.7 331 85.5
MD02G1119200 Malus domestica HOM05D003687 ORTHO05D004571 5.9e-162 574.3 331 85.2
CiPaw.07G004000 Carya illinoinensis HOM05D003687 ORTHO05D004571 1.0e-161 573.5 331 84.6
Eucgr.I02231 Eucalyptus grandis HOM05D003687 ORTHO05D004571 1.0e-161 573.5 331 82.8
BraA09t36786Z Brassica rapa HOM05D003687 ORTHO05D004571 1.3e-161 573.2 331 82.5
SGA_v2.0_scaffold2G00959 Striga asiatica HOM05D003687 ORTHO05D004571 1.3e-161 573.2 329 82.4
TWI53G1012 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 1.3e-161 573.2 331 83.1
A09p11460 Brassica napus HOM05D003687 ORTHO05D004571 1.7e-161 572.8 331 82.2
Migut.H02194 Erythranthe guttata HOM05D003687 ORTHO05D004571 2.3e-161 572.4 329 83.3
Carub.0007s0467 Capsella rubella HOM05D003687 ORTHO05D004571 2.9e-161 572.0 331 82.8
Ciclev10025659m.g Citrus clementina HOM05D003687 ORTHO05D004571 2.9e-161 572.0 331 82.2
Potri.005G099900 Populus trichocarpa HOM05D003687 ORTHO05D004571 3.9e-161 571.6 331 83.4
Sabra05G0082600 Salix brachista HOM05D003687 ORTHO05D004571 3.9e-161 571.6 331 83.7
Thhalv10025259m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 5.0e-161 571.2 331 82.8
Hma1.2p1_2491F.1_g323220 Hydrangea macrophylla HOM05D003687 ORTHO05D004571 6.6e-161 570.9 331 83.4
QL06p053788 Quercus lobata HOM05D003687 ORTHO05D004571 6.6e-161 570.9 329 84.5
BolC3t20334H Brassica oleracea HOM05D003687 ORTHO05D004571 8.6e-161 570.5 331 82.5
AL7G15520 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 1.1e-160 570.1 331 82.8
AT4G35630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 1.1e-160 570.1 331 83.4
QL06p052789 Quercus lobata HOM05D003687 ORTHO05D004571 1.1e-160 570.1 329 84.2
Sp3g30960 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.9e-160 569.3 331 82.5
BcaC04g22959 Brassica carinata HOM05D003687 ORTHO05D004571 2.5e-160 568.9 331 82.2
BolC9t54238H Brassica oleracea HOM05D003687 ORTHO05D004571 2.5e-160 568.9 331 82.2
Thhalv10023021m.g Eutrema salsugineum HOM05D003687 ORTHO05D004571 2.5e-160 568.9 331 82.8
Glyma.01G159800 Glycine max HOM05D003687 ORTHO05D004571 2.5e-160 568.9 332 84.0
Thecc.01G007000 Theobroma cacao HOM05D003687 ORTHO05D004571 4.3e-160 568.2 331 81.6
AT2G17630 Arabidopsis thaliana HOM05D003687 ORTHO05D004571 5.6e-160 567.8 331 82.5
C09p13480 Brassica napus HOM05D003687 ORTHO05D004571 5.6e-160 567.8 331 81.9
Glyma.11G084400 Glycine max HOM05D003687 ORTHO05D004571 9.5e-160 567.0 332 84.0
BraA08t34133Z Brassica rapa HOM05D003687 ORTHO05D004571 1.2e-159 566.6 331 82.2
Sp7g33400 Schrenkiella parvula HOM05D003687 ORTHO05D004571 1.2e-159 566.6 331 82.2
Gohir.D07G177500 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.6e-159 566.2 331 81.9
A08p21800 Brassica napus HOM05D003687 ORTHO05D004571 2.1e-159 565.8 331 82.5
Carub.0003s3171 Capsella rubella HOM05D003687 ORTHO05D004571 2.8e-159 565.5 331 81.9
CARHR243980 Cardamine hirsuta HOM05D003687 ORTHO05D004571 3.6e-159 565.1 331 82.8
TWI09G0502 Tripterygium wilfordii HOM05D003687 ORTHO05D004571 3.6e-159 565.1 331 82.2
BcaC01g00508 Brassica carinata HOM05D003687 ORTHO05D004571 4.7e-159 564.7 331 81.6
C03p80790 Brassica napus HOM05D003687 ORTHO05D004571 4.7e-159 564.7 331 81.6
Aqoxy1G00525 Aquilegia oxysepala HOM05D003687 ORTHO05D004571 6.2e-159 564.3 326 82.5
Duzib147G1246 Durio zibethinus HOM05D003687 ORTHO05D004571 8.0e-159 563.9 331 81.3
CDE10G0952 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 1.4e-158 563.1 331 81.3
Aa31LG8G14900 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.8e-158 562.8 331 81.3
Gohir.A07G170700 Gossypium hirsutum HOM05D003687 ORTHO05D004571 1.8e-158 562.8 331 81.3
AL3G50590 Arabidopsis lyrata HOM05D003687 ORTHO05D004571 2.3e-158 562.4 331 81.6
Gorai.001G198400 Gossypium raimondii HOM05D003687 ORTHO05D004571 2.3e-158 562.4 331 81.3
ATR0329G002 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.2e-157 560.1 329 81.2
arahy.Tifrunner.gnm1.ann1.XW297T Arachis hypogaea HOM05D003687 ORTHO05D004571 1.2e-157 560.1 316 86.7
arahy.Tifrunner.gnm1.ann1.ZVTH8F Arachis hypogaea HOM05D003687 ORTHO05D004571 1.2e-157 560.1 316 86.7
BcaB03g12420 Brassica carinata HOM05D003687 ORTHO05D004571 5.8e-157 557.8 331 81.6
CDE10G0671 Ceratophyllum demersum HOM05D003687 ORTHO05D004571 9.8e-157 557.0 324 81.5
COL.COLO4_22538 Corchorus olitorius HOM05D003687 ORTHO05D004571 8.3e-156 553.9 331 79.5
AUR62029452 Chenopodium quinoa HOM05D003687 ORTHO05D004571 4.1e-155 551.6 333 80.5
Sc07g0001320 Simmondsia chinensis HOM05D003687 ORTHO05D004571 1.2e-154 550.1 331 80.7
Duzib264G0784 Durio zibethinus HOM05D003687 ORTHO05D004571 2.0e-154 549.3 331 79.2
SEGI_09550 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 2.0e-154 549.3 329 78.7
Phvul.003G269100 Phaseolus vulgaris HOM05D003687 ORTHO05D004571 4.6e-154 548.1 331 77.9
VMungo0251G3174 Vigna mungo HOM05D003687 ORTHO05D004571 7.8e-154 547.4 329 78.7
SHI29483 Sapria himalayana HOM05D003687 ORTHO05D004571 3.0e-153 545.4 332 79.5
Ah.03g148400 Amaranthus hybridus HOM05D003687 ORTHO05D004571 1.1e-152 543.5 332 80.1
vmacro20525 Vaccinium macrocarpon HOM05D003687 ORTHO05D004571 3.1e-150 535.4 300 85.0
Aa31LG6G12590 Aethionema arabicum HOM05D003687 ORTHO05D004571 1.1e-147 526.9 331 77.6
HPP92_002248 Vanilla planifolia HOM05D003687 ORTHO05D004571 3.2e-147 525.4 329 74.8
SMO259G0019 Selaginella moellendorffii HOM05D003687 ORTHO05D004571 1.3e-145 520.0 330 73.6
EL10Ac6g15469 Beta vulgaris HOM05D003687 ORTHO05D004571 8.6e-145 517.3 321 78.5
Mapoly0033s0118 Marchantia polymorpha HOM05D003687 ORTHO05D004571 8.9e-142 507.3 329 73.3
Pp3c9_15390 Physcomitrium patens HOM05D003687 ORTHO05D004571 1.2e-141 506.9 326 73.0
Actinidia17383 Actinidia chinensis HOM05D003687 ORTHO05D004571 1.7e-140 503.1 331 76.1
Os03g0157900 Oryza sativa ssp. japonica HOM05D003687 ORTHO05D004571 8.4e-140 500.7 331 72.5
Zm00001eb004390 Zea mays HOM05D003687 ORTHO05D004571 8.4e-140 500.7 331 72.5
CBR_g34176 Chara braunii HOM05D003687 ORTHO05D004571 6.0e-138 494.6 329 71.4
CBR_g54970 Chara braunii HOM05D003687 ORTHO05D004571 7.8e-138 494.2 329 71.4
FAN26G0112 Fragaria x ananassa HOM05D003687 ORTHO05D004571 4.9e-132 474.9 311 75.9
Haze_03674 Corylus avellana HOM05D003687 ORTHO05D004571 1.5e-120 436.8 331 68.9
Cre07.g331550 Chlamydomonas reinhardtii HOM05D003687 ORTHO05D004571 4.0e-118 428.7 330 63.0
PRCOL_00000472 Prasinoderma coloniale HOM05D003687 ORTHO05D004571 3.4e-117 425.6 331 61.3
Nitab4.5_0002967g0020 Nicotiana tabacum HOM05D003687 ORTHO05D004571 1.4e-115 420.2 223 91.5
ECA233G3718 Erigeron canadensis HOM05D003687 ORTHO05D004571 2.8e-111 406.0 317 67.2
MCO11G731 Micromonas commoda HOM05D003687 ORTHO05D004571 6.3e-103 378.3 328 56.1
GSVIVG01006497001 Vitis vinifera HOM05D003687 ORTHO05D004571 6.9e-102 374.8 331 60.7
QL06p053814 Quercus lobata HOM05D003687 ORTHO05D004571 2.9e-84 316.2 256 67.2
QL06p052765 Quercus lobata HOM05D000009 ORTHO05D000008 6.5e-84 315.1 265 64.9
Haze_26462 Corylus avellana HOM05D003687 ORTHO05D004571 1.8e-81 307.0 334 49.1
MBI05_g22625_MAGBIO Magnolia biondii HOM05D003687 ORTHO05D004571 3.9e-81 305.8 331 52.6
HanXRQChr09g0253801 Helianthus annuus HOM05D003687 ORTHO05D004571 1.5e-80 303.9 176 83.0
HanXRQChr02g0050301 Helianthus annuus HOM05D003687 ORTHO05D004571 3.7e-79 299.3 176 81.2
BcaB07g31718 Brassica carinata HOM05D003687 ORTHO05D004571 1.7e-76 290.4 179 79.9
Dinv40174 Davidia involucrata HOM05D003687 ORTHO05D004571 2.6e-72 276.6 154 86.4
QL06p052757 Quercus lobata HOM05D003687 ORTHO05D004571 1.8e-70 270.4 260 58.5
SalBow2G1655 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.5e-64 250.8 251 56.6
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.3e-57 226.9 178 68.5
CSS0005640 Camellia sinensis var. sinensis HOM05D003687 ORTHO05D004571 1.5e-56 224.2 188 63.3
PRCOL_00006694 Prasinoderma coloniale HOM05D003687 ORTHO05D049027 2.0e-53 213.8 323 38.1
QL06p053818 Quercus lobata HOM05D003687 ORTHO05D004571 1.3e-52 211.1 163 70.6
A06p33750 Brassica napus HOM05D003687 ORTHO05D004571 8.6e-52 208.4 190 60.5
MCO03G424 Micromonas commoda HOM05D003687 ORTHO05D049027 1.1e-51 208.0 337 35.3
ATR0553G001 Amborella trichopoda HOM05D003687 ORTHO05D004571 3.0e-49 199.9 190 57.4
RcHm_v2.0_Chr2g0097551 Rosa chinensis HOM05D003687 ORTHO05D004571 8.9e-49 198.4 150 66.0
Cfa023378 Carpinus fangiana HOM05D003687 ORTHO05D004571 1.7e-47 194.1 400 32.0
Dinv17413 Davidia involucrata HOM05D003687 ORTHO05D004571 9.2e-46 188.3 157 63.1
Dinv09926 Davidia involucrata HOM05D003687 ORTHO05D004571 3.5e-45 186.4 157 62.4
Dinv37828 Davidia involucrata HOM05D003687 ORTHO05D004571 8.6e-44 181.8 157 61.8
SalBow8G1645 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.1e-43 181.4 108 79.6
Dinv29031 Davidia involucrata HOM05D003687 ORTHO05D034002 8.0e-42 175.3 152 61.2
SalBow7G3504 Salvia bowleyana HOM05D003687 ORTHO05D004571 1.3e-39 167.9 97 81.4
BcaB07g31714 Brassica carinata HOM05D003687 ORTHO05D004571 3.7e-39 166.4 147 61.9
SalBow6G6204 Salvia bowleyana HOM05D003687 ORTHO05D004571 5.4e-30 136.0 78 80.8
Dinv34003 Davidia involucrata HOM05D003687 ORTHO05D004571 2.1e-29 134.0 89 73.0
SEGI_08881 Sequoiadendron giganteum HOM05D003687 ORTHO05D004571 4.0e-25 119.8 293 29.7
SalBow6G6332 Salvia bowleyana HOM05D003687 ORTHO05D004571 6.6e-20 102.4 131 45.8
Dinv18127 Davidia involucrata HOM05D003687 ORTHO05D043272 8.6e-20 102.1 63 81.0
BraA06t26310Z Brassica rapa HOM05D003687 ORTHO05D043272 1.5e-19 101.3 67 82.1
SalBow7G4144 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.4e-17 94.0 54 79.6
ATR0208G001 Amborella trichopoda HOM05D003687 ORTHO05D067511 3.1e-17 93.6 64 73.4
ATR0763G123 Amborella trichopoda HOM05D003687 ORTHO05D004571 6.9e-17 92.4 59 76.3
SalBow6G4873 Salvia bowleyana HOM05D003687 ORTHO05D004571 2.0e-16 90.9 84 56.0
ATR0749G088 Amborella trichopoda HOM05D003687 ORTHO05D004571 1.7e-15 87.8 59 72.9
ATR0329G021 Amborella trichopoda HOM05D003687 ORTHO05D004571 7.8e-13 79.0 55 72.7
RcHm_v2.0_Chr2g0097541 Rosa chinensis HOM05D003687 ORTHO05D004571 5.6e-11 72.8 40 90.0
Psat6g182000 Pisum sativum HOM05D002062 ORTHO05D002242 2.1e-10 70.9 50 68.0
Sopen04g021110 Solanum pennellii HOM05D001565 ORTHO05D018129 3.6e-10 70.1 40 87.5
Solyc04g150135.1 Solanum lycopersicum HOM05D001565 ORTHO05D001725 1.1e-09 68.6 42 78.6
Solyc04g050430.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 6.9e-09 65.9 41 78.0
Solyc04g050403.1 Solanum lycopersicum HOM05D001565 ORTHO05D004571 9.0e-09 65.5 40 85.0
Psat3g043760 Pisum sativum HOM05D003687 ORTHO05D018418 1.2e-08 65.1 37 78.4
SalBow6G6873 Salvia bowleyana HOM05D000052 ORTHO05D000046 3.4e-08 63.5 108 35.2
TAR371G0743 Trochodendron aralioides HOM05D003687 ORTHO05D006936 9.9e-08 62.0 60 51.7
Solyc04g050380.3 Solanum lycopersicum HOM05D001565 ORTHO05D018129 3.8e-07 60.1 40 80.0
BolC3t18117H Brassica oleracea HOM05D003687 ORTHO05D004571 1.1e-06 58.5 37 78.4


User provided reference genes

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