Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G890.76 Capsicum annuum HOM05D001343 ORTHO05D007223 0.0e+00 1167.9 808 100.0
Nitab4.5_0000702g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 2.5e-254 882.5 811 69.2
Solyc02g082840.3 Solanum lycopersicum HOM05D001343 ORTHO05D007223 6.1e-253 877.9 810 78.1
Sopen02g027640 Solanum pennellii HOM05D001343 ORTHO05D007223 1.3e-242 843.6 795 77.1
Peaxi162Scf01446g00025 Petunia axillaris HOM05D001343 ORTHO05D007223 3.0e-239 832.4 816 68.0
Nitab4.5_0002967g0060 Nicotiana tabacum HOM05D001343 ORTHO05D007223 7.9e-208 728.0 810 60.4
Dinv08526 Davidia involucrata HOM05D001343 ORTHO05D007223 5.3e-196 688.7 796 59.2
Hma1.2p1_0300F.1_g118160 Hydrangea macrophylla HOM05D001343 ORTHO05D007223 2.6e-187 659.8 768 61.3
Actinidia17384 Actinidia chinensis HOM05D001343 ORTHO05D007223 6.1e-176 622.1 798 53.4
CiPaw.07G004100 Carya illinoinensis HOM05D001343 ORTHO05D007223 5.1e-175 619.0 802 59.2
MSTRG.15594 Avicennia marina HOM05D001343 ORTHO05D007223 4.3e-174 615.9 793 61.3
Phvul.002G114800 Phaseolus vulgaris HOM05D001343 ORTHO05D007223 1.7e-173 614.0 791 57.5
Haze_03675 Corylus avellana HOM05D001343 ORTHO05D007223 5.3e-164 582.4 809 51.3
MD02G1119300 Malus domestica HOM05D001343 ORTHO05D007223 3.5e-163 579.7 787 57.4
SGA_v2.0_scaffold12G05990 Striga asiatica HOM05D001343 ORTHO05D007223 2.9e-162 576.6 794 52.3
GSVIVG01003839001 Vitis vinifera HOM05D001343 ORTHO05D007223 7.2e-161 572.0 738 54.1
Nn5g30956 Nelumbo nucifera HOM05D001343 ORTHO05D007223 2.7e-160 570.1 762 62.6
SalBow5G5069 Salvia bowleyana HOM05D001343 ORTHO05D007223 2.7e-160 570.1 852 58.1
MD15G1233300 Malus domestica HOM05D001343 ORTHO05D007223 3.0e-159 566.6 787 50.6
Duzib187G0329 Durio zibethinus HOM05D001343 ORTHO05D007223 4.0e-159 566.2 788 49.7
TAR381G1734 Trochodendron aralioides HOM05D001343 ORTHO05D007223 2.6e-158 563.5 800 53.0
Aqoxy5G01035 Aquilegia oxysepala HOM05D001343 ORTHO05D007223 4.4e-158 562.8 772 52.6
CANSAT25G0854 Cannabis sativa HOM05D001343 ORTHO05D007223 2.4e-156 557.0 745 55.0
PGR083G0487 Punica granatum HOM05D001343 ORTHO05D007223 3.1e-156 556.6 792 58.8
CANSAT25G1453 Cannabis sativa HOM05D001343 ORTHO05D007223 4.1e-156 556.2 745 54.9
Prupe.7G179600 Prunus persica HOM05D001343 ORTHO05D007223 4.1e-156 556.2 779 52.5
QL06p052741 Quercus lobata HOM05D001343 ORTHO05D007223 1.7e-154 550.8 821 48.7
FAN23G1852 Fragaria x ananassa HOM05D001343 ORTHO05D007223 8.5e-154 548.5 785 53.9
arahy.Tifrunner.gnm1.ann1.AU9Y8G Arachis hypogaea HOM05D001343 ORTHO05D007223 1.9e-153 547.4 803 59.8
arahy.Tifrunner.gnm1.ann1.SLQH96 Arachis hypogaea HOM05D001343 ORTHO05D007223 1.9e-153 547.4 803 59.8
Lalb_Chr05g0211921 Lupinus albus HOM05D001343 ORTHO05D007223 4.7e-152 542.7 799 48.6
Atru.chr3.956 Acer truncatum HOM05D001343 ORTHO05D007223 6.8e-151 538.9 768 50.5
Duzib147G0638 Durio zibethinus HOM05D001343 ORTHO05D007223 7.0e-148 528.9 792 48.2
Lj2g0004784 Lotus japonicus HOM05D001343 ORTHO05D007223 7.0e-148 528.9 805 57.3
Hund03615 Selenicereus undatus HOM05D001343 ORTHO05D007223 9.1e-148 528.5 794 50.9
Glyma.01G159900 Glycine max HOM05D001343 ORTHO05D007223 7.7e-147 525.4 792 53.4
Gohir.A10G099100 Gossypium hirsutum HOM05D001343 ORTHO05D007223 1.4e-143 514.6 781 51.1
QL06p053829 Quercus lobata HOM05D001343 ORTHO05D007223 1.2e-142 511.5 787 51.6
FvH4_1g10521 Fragaria vesca HOM05D001343 ORTHO05D007223 2.6e-142 510.4 785 51.5
FAN19G1061 Fragaria x ananassa HOM05D001343 ORTHO05D007223 3.4e-142 510.0 785 51.8
TPR.G25095 Trifolium pratense HOM05D001343 ORTHO05D007223 9.8e-142 508.4 804 48.8
HanXRQChr14g0442391 Helianthus annuus HOM05D001343 ORTHO05D007223 1.7e-141 507.7 796 49.9
PSO210G1702 Papaver somniferum HOM05D001343 ORTHO05D007223 3.7e-141 506.5 770 48.3
Sabra05G0082500 Salix brachista HOM05D001343 ORTHO05D007223 2.4e-140 503.8 788 50.8
Dinv40173 Davidia involucrata HOM05D001343 ORTHO05D007223 3.1e-140 503.4 512 58.6
Cpa.g.sc55.186 Carica papaya HOM05D001343 ORTHO05D007223 5.4e-140 502.7 797 49.1
FAN28G2189 Fragaria x ananassa HOM05D001343 ORTHO05D007223 1.2e-139 501.5 785 51.3
Potri.005G099800 Populus trichocarpa HOM05D001343 ORTHO05D007223 1.2e-139 501.5 788 50.3
ECA238G2213 Erigeron canadensis HOM05D001343 ORTHO05D007223 2.7e-139 500.4 805 47.5
Cc07_g11650 Coffea canephora HOM05D001343 ORTHO05D007223 1.7e-138 497.7 769 60.2
PSO170G3735 Papaver somniferum HOM05D001343 ORTHO05D007223 2.9e-138 496.9 761 51.2
Lsat_1_v5_gn_2_74420 Lactuca sativa HOM05D001343 ORTHO05D007223 1.6e-136 491.1 800 54.2
Medtr5g023770 Medicago truncatula HOM05D001343 ORTHO05D007223 1.6e-136 491.1 766 53.7
EL10Ac6g15468 Beta vulgaris HOM05D001343 ORTHO05D007223 3.6e-136 490.0 807 47.8
vmacro20524 Vaccinium macrocarpon HOM05D001343 ORTHO05D007223 3.6e-136 490.0 757 49.1
TWI09G1271 Tripterygium wilfordii HOM05D001343 ORTHO05D007223 1.0e-135 488.4 791 45.9
Thecc.01G007100 Theobroma cacao HOM05D001343 ORTHO05D007223 4.0e-135 486.5 792 47.2
Ciclev10024922m.g Citrus clementina HOM05D001343 ORTHO05D007223 3.4e-134 483.4 792 48.5
Gohir.D10G089000 Gossypium hirsutum HOM05D001343 ORTHO05D007223 9.8e-134 481.9 781 49.7
Gorai.011G097900 Gossypium raimondii HOM05D001343 ORTHO05D007223 9.8e-134 481.9 781 49.7
Sed0023593 Sechium edule HOM05D001343 ORTHO05D007223 2.7e-131 473.8 796 45.1
CsaV3_3G000380 Cucumis sativus L. HOM05D001343 ORTHO05D007223 5.0e-130 469.5 798 45.4
Carub.0008s2848 Capsella rubella HOM05D001343 ORTHO05D007223 3.3e-129 466.8 754 47.3
THA.LOC104826465 Tarenaya hassleriana HOM05D001343 ORTHO05D007223 2.1e-128 464.2 787 47.0
Eucgr.J02528 Eucalyptus grandis HOM05D001343 ORTHO05D007223 1.8e-127 461.1 792 55.2
VMungo1215G1031 Vigna mungo HOM05D001343 ORTHO05D007223 5.2e-127 459.5 800 53.5
CSS0043948 Camellia sinensis var. sinensis HOM05D001343 ORTHO05D007223 1.5e-126 458.0 787 46.5
AUR62003379 Chenopodium quinoa HOM05D001343 ORTHO05D007223 1.5e-126 458.0 799 48.4
Actinidia22910 Actinidia chinensis HOM05D001343 ORTHO05D007223 5.8e-126 456.1 804 46.9
ClCG10G000340 Citrullus lanatus HOM05D001343 ORTHO05D007223 3.2e-124 450.3 805 45.0
Glyma.11G084200 Glycine max HOM05D001343 ORTHO05D007223 1.6e-123 448.0 791 49.8
Manes.02G112700 Manihot esculenta HOM05D001343 ORTHO05D007223 1.6e-123 448.0 785 47.4
A09p10220 Brassica napus HOM05D001343 ORTHO05D002008 8.6e-122 442.2 724 49.3
C09p12110 Brassica napus HOM05D001343 ORTHO05D002008 8.6e-122 442.2 742 49.5
BcaC04g23105 Brassica carinata HOM05D001343 ORTHO05D002008 1.1e-121 441.8 742 49.5
BcaB04g20130 Brassica carinata HOM05D001343 ORTHO05D002008 1.6e-120 438.0 744 44.4
Zm00001eb104860 Zea mays HOM05D001343 ORTHO05D007223 2.1e-120 437.6 746 48.1
BraA09t36667Z Brassica rapa HOM05D001343 ORTHO05D002008 3.1e-119 433.7 747 47.9
Manes.01G153700 Manihot esculenta HOM05D001343 ORTHO05D007223 5.2e-119 433.0 502 68.9
AL8G45590 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 1.2e-118 431.8 780 46.3
BolC9t54101H Brassica oleracea HOM05D001343 ORTHO05D002008 7.5e-118 429.1 749 47.3
Atru.chr3.968 Acer truncatum HOM05D001343 ORTHO05D007223 1.3e-117 428.3 771 45.4
AT5G66030 Arabidopsis thaliana HOM05D001343 ORTHO05D007223 1.7e-117 427.9 807 42.4
Sp2g30660 Schrenkiella parvula HOM05D001343 ORTHO05D007223 2.2e-117 427.6 790 46.6
ATR0661G538 Amborella trichopoda HOM05D001343 ORTHO05D007223 2.9e-117 427.2 757 44.4
COL.COLO4_22537 Corchorus olitorius HOM05D001343 ORTHO05D007223 7.1e-116 422.5 797 45.8
Ah.03g148390 Amaranthus hybridus HOM05D001343 ORTHO05D007223 1.2e-115 421.8 790 45.7
Migut.L00734 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.7e-114 417.9 791 45.9
Ca_24963_v3 Cicer arietinum L. HOM05D001343 ORTHO05D007223 1.1e-113 415.2 823 46.1
Lj4A232G45 Lonicera japonica HOM05D001343 ORTHO05D007223 1.9e-113 414.5 760 52.8
AUR62029449 Chenopodium quinoa HOM05D001343 ORTHO05D007223 5.6e-113 412.9 796 44.7
Thhalv10003686m.g Eutrema salsugineum HOM05D001343 ORTHO05D007223 1.2e-112 411.8 772 41.5
HPP92_003502 Vanilla planifolia HOM05D001343 ORTHO05D007223 3.1e-111 407.1 768 50.5
MELO3C013733.2 Cucumis melo HOM05D001343 ORTHO05D007223 1.4e-103 381.7 805 40.7
Sc16g0001690 Simmondsia chinensis HOM05D001343 ORTHO05D007223 2.6e-102 377.5 793 40.9
Os07g0472500 Oryza sativa ssp. japonica HOM05D001343 ORTHO05D007223 9.3e-100 369.0 748 41.2
CARHR281730 Cardamine hirsuta HOM05D001343 ORTHO05D007223 1.8e-95 354.8 326 62.9
unitig_88.g27773 Utricularia gibba HOM05D001343 ORTHO05D007223 4.3e-89 333.6 771 37.5
DCAR_011583 Daucus carota HOM05D001343 ORTHO05D007223 1.6e-88 331.6 791 44.1
Mapoly0179s0009 Marchantia polymorpha HOM05D001343 ORTHO05D007223 3.9e-82 310.5 685 35.0
SEGI_12448 Sequoiadendron giganteum HOM05D001343 ORTHO05D007223 5.5e-76 290.0 773 39.8
AagrBONN_evm.TU.Sc2ySwM_344.163 Anthoceros agrestis HOM05D001343 ORTHO05D007223 1.1e-71 275.8 664 35.2
CDE06G1375 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 5.0e-69 266.9 275 56.7
Pp3c20_18210 Physcomitrium patens HOM05D001343 ORTHO05D007223 3.0e-66 257.7 827 30.8
CDE07G1064 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.6e-64 251.9 258 57.4
RcHm_v2.0_Chr2g0097451 Rosa chinensis HOM05D001343 ORTHO05D007223 1.0e-58 232.6 190 73.2
Psat2g150480 Pisum sativum HOM05D001343 ORTHO05D007223 5.7e-57 226.9 192 67.7
Psat2g150520 Pisum sativum HOM05D001343 ORTHO05D007223 8.5e-53 213.0 524 52.3
RcHm_v2.0_Chr2g0097461 Rosa chinensis HOM05D001343 ORTHO05D007223 2.7e-51 208.0 565 41.9
Migut.L00811 Erythranthe guttata HOM05D001343 ORTHO05D007223 2.4e-47 194.9 130 83.8
RcHm_v2.0_Chr2g0097581 Rosa chinensis HOM05D001343 ORTHO05D007223 1.2e-46 192.6 565 40.9
QL06p053793 Quercus lobata HOM05D001343 ORTHO05D007223 3.3e-41 174.5 134 80.6
Pp3c23_9770 Physcomitrium patens HOM05D001343 ORTHO05D007223 2.4e-39 168.3 668 26.3
Actinidia26548 Actinidia chinensis HOM05D001343 ORTHO05D007223 1.2e-38 166.0 149 64.4
Rhsim10G0198000 Rhododendron simsii HOM05D001343 ORTHO05D007223 1.5e-36 159.1 816 28.2
arahy.Tifrunner.gnm1.ann1.ISY8LN Arachis hypogaea HOM05D001343 ORTHO05D007223 1.8e-34 152.1 178 53.4
Migut.L00927 Erythranthe guttata HOM05D001343 ORTHO05D007223 1.3e-32 146.0 374 40.6
RcHm_v2.0_Chr2g0097571 Rosa chinensis HOM05D001343 ORTHO05D007223 6.3e-32 143.7 123 69.1
CBR_g34809 Chara braunii HOM05D000019 ORTHO05D000002 1.5e-28 132.5 343 32.9
Oeu032010.1 Olea europaea HOM05D001343 ORTHO05D007223 1.6e-27 129.0 189 51.9
Cpa.g.sc1414.4 Carica papaya HOM05D001343 ORTHO05D007223 8.0e-27 126.7 257 54.1
arahy.Tifrunner.gnm1.ann1.9PSP05 Arachis hypogaea HOM05D001343 ORTHO05D007223 2.0e-25 122.1 166 54.2
arahy.Tifrunner.gnm1.ann1.6P6C0I Arachis hypogaea HOM05D001343 ORTHO05D007223 7.3e-20 103.6 93 71.0
CDE07G1287 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.1e-19 102.1 257 41.2
arahy.Tifrunner.gnm1.ann1.T78FCF Arachis hypogaea HOM05D001343 ORTHO05D007223 2.9e-16 91.7 79 69.6
HPP92_003508 Vanilla planifolia HOM05D001343 ORTHO05D007223 2.9e-16 91.7 56 89.3
arahy.Tifrunner.gnm1.ann1.QS1PDB Arachis hypogaea HOM05D001343 ORTHO05D007223 3.7e-16 91.3 81 58.0
RcHm_v2.0_Chr6g0253501 Rosa chinensis HOM05D001343 ORTHO05D007223 3.7e-16 91.3 141 44.0
Aa31LG1G14520 Aethionema arabicum HOM05D001343 ORTHO05D007223 1.4e-15 89.4 287 43.2
QL06p052753 Quercus lobata HOM05D003687 ORTHO05D007223 2.3e-13 82.0 54 79.6
AL472U10010 Arabidopsis lyrata HOM05D001343 ORTHO05D007223 5.6e-12 77.4 134 39.6
Actinidia26547 Actinidia chinensis HOM05D001343 ORTHO05D007223 3.1e-10 71.6 154 39.0
CDE06G1191 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 1.5e-09 69.3 101 40.6
CDE06G1033 Ceratophyllum demersum HOM05D001343 ORTHO05D007223 2.0e-09 68.9 88 46.6
Oeu020654.1 Olea europaea HOM05D001343 ORTHO05D007223 2.2e-08 65.5 45 77.8
Glyma.18G186501 Glycine max HOM05D001343 ORTHO05D007223 3.7e-08 64.7 59 62.7
Lsat_1_v5_gn_4_84780 Lactuca sativa HOM05D003172 ORTHO05D007223 1.1e-07 63.2 52 73.1
RcHm_v2.0_Chr2g0097561 Rosa chinensis HOM05D001343 ORTHO05D007223 4.1e-07 61.2 47 74.5
Cre09.g398808 Chlamydomonas reinhardtii HOM05D001343 ORTHO05D007223 1.2e-06 59.7 75 41.3
arahy.Tifrunner.gnm1.ann1.55UCKQ Arachis hypogaea HOM05D050568 ORTHO05D007223 6.0e-06 57.4 72 47.2
ECA238G3708 Erigeron canadensis HOM05D012425 ORTHO05D014354 6.0e-06 57.4 69 46.4


User provided reference genes

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