Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G890.41 Capsicum annuum HOM05D004723 ORTHO05D006176 2.2e-307 1058.5 700 100.0
PGSC0003DMG400003588 Solanum tuberosum HOM05D004723 ORTHO05D006176 8.5e-243 844.0 697 80.3
Nitab4.5_0006899g0060 Nicotiana tabacum HOM05D004723 ORTHO05D006176 3.3e-239 832.0 704 79.0
Sopen02g028260 Solanum pennellii HOM05D004723 ORTHO05D006176 5.9e-236 821.2 701 83.2
Solyc02g083470.3 Solanum lycopersicum HOM05D004723 ORTHO05D006176 3.8e-235 818.5 702 79.8
Nitab4.5_0001789g0050 Nicotiana tabacum HOM05D004723 ORTHO05D006176 6.5e-235 817.8 701 80.6
Peaxi162Scf00198g00136 Petunia axillaris HOM05D004723 ORTHO05D006176 1.8e-213 746.5 696 73.9
Lj4A224T28 Lonicera japonica HOM05D004723 ORTHO05D006176 1.1e-176 624.4 706 59.5
CSS0012813 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.2e-174 616.7 536 65.3
Nn5g30820 Nelumbo nucifera HOM05D004723 ORTHO05D006176 4.9e-174 615.5 542 64.0
Cc07_g11220 Coffea canephora HOM05D004723 ORTHO05D006176 1.1e-173 614.4 539 64.2
MSTRG.10980 Avicennia marina HOM05D004723 ORTHO05D006176 4.6e-172 609.0 531 64.6
CSS0036730 Camellia sinensis var. sinensis HOM05D004723 ORTHO05D006176 2.3e-171 606.7 535 64.3
CiPaw.07G062200 Carya illinoinensis HOM05D004723 ORTHO05D006176 1.1e-168 597.8 525 62.9
GSVIVG01007226001 Vitis vinifera HOM05D004723 ORTHO05D006176 1.1e-168 597.8 684 57.0
Haze_03712 Corylus avellana HOM05D004723 ORTHO05D006176 5.3e-168 595.5 517 63.8
Actinidia35669 Actinidia chinensis HOM05D004723 ORTHO05D006176 1.5e-167 594.0 536 63.2
Cfa007019 Carpinus fangiana HOM05D004723 ORTHO05D006176 1.9e-165 587.0 516 64.1
Atru.chr3.886 Acer truncatum HOM05D004723 ORTHO05D006176 9.3e-165 584.7 525 64.2
Atru.chr3.897 Acer truncatum HOM05D004723 ORTHO05D006176 9.3e-165 584.7 525 64.2
Sabra05G0089200 Salix brachista HOM05D004723 ORTHO05D006176 1.0e-163 581.3 539 63.8
Potri.005G108800 Populus trichocarpa HOM05D004723 ORTHO05D006176 3.0e-163 579.7 522 64.6
Eucgr.I02314 Eucalyptus grandis HOM05D004723 ORTHO05D006176 1.9e-162 577.0 541 59.0
Duzib147G1420 Durio zibethinus HOM05D004723 ORTHO05D006176 4.8e-161 572.4 546 61.4
Thecc.08G139800 Theobroma cacao HOM05D004723 ORTHO05D006176 2.6e-159 566.6 541 61.2
ClCG05G000690 Citrullus lanatus HOM05D004723 ORTHO05D006176 3.4e-159 566.2 542 61.4
TWI09G0244 Tripterygium wilfordii HOM05D004723 ORTHO05D006176 7.1e-157 558.5 544 58.5
CsaV3_3G007910 Cucumis sativus L. HOM05D004723 ORTHO05D006176 1.2e-156 557.8 540 62.6
Sc07g0001170 Simmondsia chinensis HOM05D004723 ORTHO05D006176 1.6e-156 557.4 519 62.8
DCAR_024713 Daucus carota HOM05D004723 ORTHO05D006176 2.7e-156 556.6 568 58.5
Migut.F01827 Erythranthe guttata HOM05D004723 ORTHO05D006176 2.3e-155 553.5 551 59.5
QL06p051414 Quercus lobata HOM05D004723 ORTHO05D006176 5.1e-155 552.4 541 61.4
MELO3C006009.2 Cucumis melo HOM05D004723 ORTHO05D006176 3.3e-154 549.7 540 61.7
Manes.10G142700 Manihot esculenta HOM05D004723 ORTHO05D006176 2.8e-153 546.6 705 49.4
Sed0008382 Sechium edule HOM05D004723 ORTHO05D006176 1.7e-150 537.3 706 54.4
Gorai.012G044400 Gossypium raimondii HOM05D004723 ORTHO05D006176 2.9e-150 536.6 705 52.9
Gohir.A05G376600 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.6e-148 529.6 537 60.1
Prupe.7G173800 Prunus persica HOM05D004723 ORTHO05D006176 1.8e-147 527.3 553 59.3
HanXRQChr09g0257321 Helianthus annuus HOM05D004723 ORTHO05D006176 5.3e-144 515.8 557 57.1
Cpa.g.sc6.304 Carica papaya HOM05D004723 ORTHO05D006176 1.5e-143 514.2 543 58.0
PSO675G8954 Papaver somniferum HOM05D004723 ORTHO05D006176 4.5e-143 512.7 537 60.3
ECA232G2222 Erigeron canadensis HOM05D004723 ORTHO05D006176 5.9e-143 512.3 547 56.1
SGA_v2.0_scaffold111G31425 Striga asiatica HOM05D004723 ORTHO05D006176 2.2e-142 510.4 570 56.7
TAR628G1348 Trochodendron aralioides HOM05D004723 ORTHO05D006176 3.0e-139 500.0 482 59.3
Ciclev10025027m.g Citrus clementina HOM05D004723 ORTHO05D006176 5.1e-139 499.2 532 56.4
Aqoxy6G02087 Aquilegia oxysepala HOM05D004723 ORTHO05D006176 1.5e-138 497.7 529 56.1
Rhsim08G0030800 Rhododendron simsii HOM05D004723 ORTHO05D006176 4.8e-137 492.7 456 61.6
arahy.Tifrunner.gnm1.ann1.DG5MW5 Arachis hypogaea HOM05D004723 ORTHO05D006176 8.2e-137 491.9 543 55.6
Lalb_Chr16g0391491 Lupinus albus HOM05D004723 ORTHO05D006176 1.1e-136 491.5 545 56.3
EL10Ac6g15170 Beta vulgaris HOM05D004723 ORTHO05D006176 3.1e-136 490.0 538 56.1
Lsat_1_v5_gn_4_144101 Lactuca sativa HOM05D004723 ORTHO05D006176 6.9e-136 488.8 539 57.1
Oeu005338.2 Olea europaea HOM05D004723 ORTHO05D006176 1.2e-135 488.0 707 56.2
MD02G1124600 Malus domestica HOM05D004723 ORTHO05D006176 1.5e-135 487.6 481 60.5
PSO541G1155 Papaver somniferum HOM05D004723 ORTHO05D006176 2.0e-135 487.3 538 58.0
AUR62003701 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.3e-134 484.6 543 56.0
Gohir.1Z049326 Gossypium hirsutum HOM05D004723 ORTHO05D006176 3.2e-133 479.9 542 56.6
Hund14070 Selenicereus undatus HOM05D004723 ORTHO05D006176 2.1e-132 477.2 467 62.3
vmacro18436 Vaccinium macrocarpon HOM05D004723 ORTHO05D006176 7.9e-132 475.3 553 52.6
AUR62018009 Chenopodium quinoa HOM05D004723 ORTHO05D006176 1.0e-131 474.9 529 54.3
arahy.Tifrunner.gnm1.ann1.7VD04T Arachis hypogaea HOM05D004723 ORTHO05D006176 1.4e-131 474.6 543 55.6
PGR119G2074 Punica granatum HOM05D004723 ORTHO05D006176 2.0e-130 470.7 518 57.5
Glyma.16G122800 Glycine max HOM05D004723 ORTHO05D006176 4.1e-128 463.0 538 54.5
FAN26G3228 Fragaria x ananassa HOM05D004723 ORTHO05D006176 5.3e-128 462.6 544 56.4
Ca_18264_v3 Cicer arietinum L. HOM05D004723 ORTHO05D006176 9.1e-128 461.8 543 54.7
Phvul.003G266400 Phaseolus vulgaris HOM05D004723 ORTHO05D006176 5.9e-127 459.1 535 55.9
RcHm_v2.0_Chr2g0098611 Rosa chinensis HOM05D004723 ORTHO05D006176 5.9e-127 459.1 553 54.8
CANSAT25G3056 Cannabis sativa HOM05D004723 ORTHO05D006176 7.7e-127 458.8 539 56.8
ATR0665G361 Amborella trichopoda HOM05D004723 ORTHO05D006176 7.2e-125 452.2 535 53.5
Lj4g0028127 Lotus japonicus HOM05D004723 ORTHO05D006176 3.6e-124 449.9 535 53.3
FvH4_1g11200 Fragaria vesca HOM05D004723 ORTHO05D006176 4.7e-124 449.5 544 55.1
FAN19G1371 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.7e-124 449.5 544 55.1
unitig_22.g6210 Utricularia gibba HOM05D004119 ORTHO05D004797 4.7e-124 449.5 567 49.4
Glyma.02G045200 Glycine max HOM05D004723 ORTHO05D006176 6.1e-124 449.1 527 52.8
VMungo0251G3240 Vigna mungo HOM05D004723 ORTHO05D006176 2.3e-123 447.2 548 53.1
Psat7g090000 Pisum sativum HOM05D004723 ORTHO05D006176 1.2e-122 444.9 548 50.4
Dinv40130 Davidia involucrata HOM05D004723 ORTHO05D006176 4.4e-122 443.0 331 71.3
FAN23G0842 Fragaria x ananassa HOM05D004723 ORTHO05D006176 4.8e-121 439.5 539 52.7
Ah.01g003790 Amaranthus hybridus HOM05D004723 ORTHO05D006176 4.5e-119 433.0 554 51.1
AT3G01160 Arabidopsis thaliana HOM05D004723 ORTHO05D006176 2.1e-116 424.1 548 50.9
SEGI_08029 Sequoiadendron giganteum HOM05D004723 ORTHO05D006176 3.4e-114 416.8 532 48.5
Medtr4g096820 Medicago truncatula HOM05D004723 ORTHO05D006176 1.2e-111 408.3 550 51.1
Gohir.1Z049627 Gossypium hirsutum HOM05D004723 ORTHO05D006176 2.7e-111 407.1 432 59.3
AL3G11100 Arabidopsis lyrata HOM05D004723 ORTHO05D006176 5.9e-111 406.0 544 51.5
Sp3g00960 Schrenkiella parvula HOM05D004723 ORTHO05D006176 1.5e-109 401.4 526 49.4
Aa31LG5G12460 Aethionema arabicum HOM05D004723 ORTHO05D006176 1.6e-108 397.9 515 51.8
Carub.0003s0100 Capsella rubella HOM05D004723 ORTHO05D006176 8.0e-108 395.6 541 52.3
TPR.G4863 Trifolium pratense HOM05D004723 ORTHO05D006176 4.0e-107 393.3 540 49.1
BraA05t23177Z Brassica rapa HOM05D004723 ORTHO05D006176 1.6e-103 381.3 526 50.2
Thhalv10020182m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 7.8e-103 379.0 533 49.7
A05p44800 Brassica napus HOM05D004723 ORTHO05D006176 1.6e-100 371.3 539 47.3
Zm00001eb323180 Zea mays HOM05D004723 ORTHO05D006176 2.1e-100 370.9 539 47.3
CARHR075890 Cardamine hirsuta HOM05D004723 ORTHO05D006176 4.0e-99 366.7 502 50.0
Os07g0531700 Oryza sativa ssp. japonica HOM05D004723 ORTHO05D006176 5.2e-99 366.3 548 44.0
C09p75390 Brassica napus HOM05D004723 ORTHO05D006176 2.2e-97 360.9 504 48.2
BcaC05g30387 Brassica carinata HOM05D004723 ORTHO05D006176 2.4e-96 357.5 530 45.7
Medtr4g073330 Medicago truncatula HOM05D004723 ORTHO05D006176 3.2e-96 357.1 546 44.9
BcaC05g30489 Brassica carinata HOM05D004723 ORTHO05D006176 7.0e-96 355.9 520 47.1
BolC5t35121H Brassica oleracea HOM05D004723 ORTHO05D006176 3.5e-95 353.6 511 47.7
Thecc.01G155000 Theobroma cacao HOM05D004723 ORTHO05D006176 7.8e-95 352.4 383 59.0
SHI00027 Sapria himalayana HOM05D004723 ORTHO05D006176 1.6e-92 344.7 460 46.3
AagrBONN_evm.TU.Sc2ySwM_117.2822 Anthoceros agrestis HOM05D004723 ORTHO05D006176 2.1e-92 344.4 558 41.0
BcaC01g04506 Brassica carinata HOM05D004723 ORTHO05D006176 8.3e-89 332.4 531 42.6
Rhsim08G0030900 Rhododendron simsii HOM05D004723 ORTHO05D006176 6.8e-83 312.8 499 45.5
CDE05G0976 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 2.6e-82 310.8 219 70.8
AagrBONN_evm.TU.Sc2ySwM_368.2747 Anthoceros agrestis HOM05D004723 ORTHO05D006176 5.8e-82 309.7 579 40.6
SMO232G0062 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 1.7e-81 308.1 450 42.4
SMO239G0207 Selaginella moellendorffii HOM05D004723 ORTHO05D006176 4.6e-79 300.1 440 43.2
Pp3c17_7210 Physcomitrium patens HOM05D004723 ORTHO05D006176 8.1e-76 289.3 561 38.3
Mapoly0061s0018 Marchantia polymorpha HOM05D004723 ORTHO05D006176 1.3e-70 271.9 589 34.1
TAR628G1016 Trochodendron aralioides HOM05D004723 ORTHO05D005421 9.0e-67 259.2 217 63.6
HPP92_019125 Vanilla planifolia HOM05D004723 ORTHO05D006176 2.1e-60 238.0 203 58.6
MD15G1238600 Malus domestica HOM05D004723 ORTHO05D006176 2.1e-55 221.5 298 51.3
C03p39900 Brassica napus HOM05D004723 ORTHO05D006176 3.5e-55 220.7 198 57.6
MD15G1238700 Malus domestica HOM05D004723 ORTHO05D006176 8.7e-54 216.1 173 67.6
CBR_g41392 Chara braunii HOM05D004723 ORTHO05D006176 2.9e-49 201.1 714 30.8
PRCOL_00004947 Prasinoderma coloniale HOM05D004723 ORTHO05D006176 3.2e-48 197.6 592 30.4
COL.COLO4_33606 Corchorus olitorius HOM05D004723 ORTHO05D006176 2.7e-47 194.5 262 50.4
COL.COLO4_34179 Corchorus olitorius HOM05D004723 ORTHO05D006176 1.3e-46 192.2 534 32.2
MCO13G085 Micromonas commoda HOM05D004723 ORTHO05D006176 1.3e-44 185.7 252 42.9
CDE05G0343 Ceratophyllum demersum HOM05D004723 ORTHO05D006176 7.1e-40 169.9 265 44.2
TPR.G3121 Trifolium pratense HOM05D004723 ORTHO05D006176 3.5e-39 167.5 220 45.9
Cre10.g452500 Chlamydomonas reinhardtii HOM05D004723 ORTHO05D006176 3.9e-38 164.1 764 27.6
HPP92_019124 Vanilla planifolia HOM05D004723 ORTHO05D006176 1.5e-37 162.2 240 49.2
Gohir.D04G039432 Gossypium hirsutum HOM05D004723 ORTHO05D006176 1.6e-31 142.1 274 40.5
Dinv40131 Davidia involucrata HOM05D004723 ORTHO05D006176 1.5e-29 135.6 123 62.6
TAR628G0893 Trochodendron aralioides HOM05D004723 ORTHO05D006176 6.3e-28 130.2 92 75.0
Oeu046870.1 Olea europaea HOM05D004723 ORTHO05D006176 5.3e-27 127.1 145 53.1
BolC3t16253H Brassica oleracea HOM05D004723 ORTHO05D006176 6.9e-27 126.7 112 54.5
Medtr3g107330 Medicago truncatula HOM05D004723 ORTHO05D006176 2.7e-23 114.8 99 53.5
Medtr3g107350 Medicago truncatula HOM05D004723 ORTHO05D006176 6.1e-23 113.6 296 38.2
THA.LOC104821168 Tarenaya hassleriana HOM05D004723 ORTHO05D006176 1.2e-18 99.4 138 47.1
AagrBONN_evm.TU.Sc2ySwM_117.2819 Anthoceros agrestis HOM05D004723 ORTHO05D006176 1.5e-18 99.0 320 32.8
TPR.G21433 Trifolium pratense HOM05D004723 ORTHO05D006176 1.5e-18 99.0 186 41.4
Thhalv10017085m.g Eutrema salsugineum HOM05D004723 ORTHO05D006176 2.0e-18 98.6 152 41.4
TPR.G330 Trifolium pratense HOM05D004723 ORTHO05D006176 7.2e-16 90.1 105 45.7
TPR.G36124 Trifolium pratense HOM05D004723 ORTHO05D006176 3.0e-14 84.7 91 47.3
BolC3t16252H Brassica oleracea HOM05D004723 ORTHO05D006176 8.2e-12 76.6 60 63.3
Actinidia28727 Actinidia chinensis HOM05D004723 ORTHO05D006176 2.4e-11 75.1 109 45.0
Nn1g05556 Nelumbo nucifera HOM05D004723 ORTHO05D006176 5.0e-09 67.4 48 56.2
FAN17G1680 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.3e-06 58.5 77 37.7
FAN24G3340 Fragaria x ananassa HOM05D032679 ORTHO05D022627 2.3e-06 58.5 77 37.7
C03p39770 Brassica napus HOM05D059891 ORTHO05D040930 5.2e-06 57.4 69 46.4


User provided reference genes

Program Settings