Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G890.19 Capsicum annuum HOM05D005912 ORTHO05D007329 4.7e-211 737.6 382 100.0
PGSC0003DMG400001581 Solanum tuberosum HOM05D005912 ORTHO05D007329 8.9e-186 653.7 372 90.6
Solyc02g083270.4 Solanum lycopersicum HOM05D005912 ORTHO05D007329 2.1e-182 642.5 372 88.2
Sopen02g028060 Solanum pennellii HOM05D005912 ORTHO05D007329 3.5e-182 641.7 372 88.4
Nitab4.5_0004259g0040 Nicotiana tabacum HOM05D004598 ORTHO05D005550 1.6e-171 606.3 361 85.6
Nitab4.5_0001696g0090 Nicotiana tabacum HOM05D004598 ORTHO05D005550 2.4e-170 602.4 363 85.1
Dinv40154 Davidia involucrata HOM05D005912 ORTHO05D007329 2.0e-124 449.9 367 62.1
Sabra05G0087400 Salix brachista HOM05D005912 ORTHO05D007329 1.3e-115 420.6 373 57.6
Cfa007040 Carpinus fangiana HOM05D005912 ORTHO05D007329 1.7e-115 420.2 374 60.7
Haze_03689 Corylus avellana HOM05D005912 ORTHO05D007329 1.7e-115 420.2 374 60.4
vmacro20502 Vaccinium macrocarpon HOM05D005912 ORTHO05D007329 1.1e-114 417.5 374 59.9
Potri.005G106500 Populus trichocarpa HOM05D005912 ORTHO05D007329 1.8e-114 416.8 374 57.2
CiPaw.08G179600 Carya illinoinensis HOM05D005912 ORTHO05D007329 2.6e-113 412.9 368 59.8
TAR625G0585 Trochodendron aralioides HOM05D005912 ORTHO05D007329 5.0e-112 408.7 367 58.6
TWI73G1263 Tripterygium wilfordii HOM05D005912 ORTHO05D007329 5.5e-111 405.2 367 58.6
Gohir.A02G175200 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.1e-110 403.3 374 56.7
QL06p052316 Quercus lobata HOM05D005912 ORTHO05D007329 2.1e-110 403.3 301 67.4
Thecc.01G010100 Theobroma cacao HOM05D005912 ORTHO05D007329 8.0e-110 401.4 372 57.5
Rhsim10G0204000 Rhododendron simsii HOM05D005912 ORTHO05D007329 1.0e-109 401.0 378 56.3
Duzib147G0472 Durio zibethinus HOM05D005912 ORTHO05D007329 1.4e-109 400.6 373 58.7
Gohir.D03G004600 Gossypium hirsutum HOM05D005912 ORTHO05D007329 2.3e-109 399.8 374 56.4
Gorai.003G004900 Gossypium raimondii HOM05D005912 ORTHO05D007329 2.3e-109 399.8 374 56.7
Lj4A227T48 Lonicera japonica HOM05D005912 ORTHO05D007329 2.3e-109 399.8 341 61.6
Cc07_g11440 Coffea canephora HOM05D005912 ORTHO05D007329 3.0e-109 399.4 354 59.6
Atru.chr3.926 Acer truncatum HOM05D005912 ORTHO05D007329 6.7e-109 398.3 372 58.3
Prupe.7G176300 Prunus persica HOM05D005912 ORTHO05D007329 1.1e-108 397.5 330 63.6
Actinidia17396 Actinidia chinensis HOM05D005912 ORTHO05D007329 2.6e-108 396.4 359 58.8
PGR102G2191 Punica granatum HOM05D005912 ORTHO05D007329 3.3e-108 396.0 368 56.8
COL.COLO4_09868 Corchorus olitorius HOM05D005912 ORTHO05D007329 5.7e-108 395.2 334 60.2
CSS0031078 Camellia sinensis var. sinensis HOM05D005912 ORTHO05D007329 7.4e-108 394.8 344 60.2
RcHm_v2.0_Chr2g0098181 Rosa chinensis HOM05D005912 ORTHO05D007329 9.7e-108 394.4 332 63.9
FAN23G1227 Fragaria x ananassa HOM05D005912 ORTHO05D007329 3.7e-107 392.5 331 63.4
Nn6g31870 Nelumbo nucifera HOM05D005912 ORTHO05D007329 6.3e-107 391.7 325 60.9
FvH4_1g10920 Fragaria vesca HOM05D005912 ORTHO05D007329 1.8e-106 390.2 370 59.2
FAN26G2135 Fragaria x ananassa HOM05D005912 ORTHO05D007329 1.6e-105 387.1 370 58.9
Ciclev10025822m.g Citrus clementina HOM05D005912 ORTHO05D007329 2.6e-105 386.3 309 62.8
TAR288G0001 Trochodendron aralioides HOM05D005912 ORTHO05D007329 2.6e-105 386.3 367 56.7
PSO541G6093 Papaver somniferum HOM05D005912 ORTHO05D007329 3.5e-105 386.0 369 55.0
MD02G1122300 Malus domestica HOM05D005912 ORTHO05D007329 4.5e-105 385.6 335 61.5
ClCG01G020670 Citrullus lanatus HOM05D005912 ORTHO05D007329 7.7e-105 384.8 338 59.2
Lj2A487G56 Lonicera japonica HOM05D005912 ORTHO05D007329 7.7e-105 384.8 373 55.2
Manes.01G152000 Manihot esculenta HOM05D005912 ORTHO05D007329 2.9e-104 382.9 351 57.5
Aqoxy6G01899 Aquilegia oxysepala HOM05D005912 ORTHO05D007329 5.0e-104 382.1 367 54.0
PSO675G2300 Papaver somniferum HOM05D005912 ORTHO05D007329 6.5e-104 381.7 353 56.1
Thhalv10025477m.g Eutrema salsugineum HOM05D005912 ORTHO05D007329 8.5e-104 381.3 373 52.5
MBI08_g40329_MAGBIO Magnolia biondii HOM05D005912 ORTHO05D007329 2.5e-103 379.8 367 54.5
THA.LOC104807519 Tarenaya hassleriana HOM05D005912 ORTHO05D007329 2.5e-103 379.8 382 53.1
Eucgr.J02496 Eucalyptus grandis HOM05D005912 ORTHO05D007329 3.2e-103 379.4 286 65.7
HanXRQChr07g0192501 Helianthus annuus HOM05D005912 ORTHO05D007329 3.2e-103 379.4 380 54.2
Ah.11g045130 Amaranthus hybridus HOM05D005912 ORTHO05D007329 2.1e-102 376.7 367 54.8
Sp7g33520 Schrenkiella parvula HOM05D005912 ORTHO05D007329 3.6e-102 375.9 370 52.4
CsaV3_6G047590 Cucumis sativus L. HOM05D005912 ORTHO05D007329 1.0e-101 374.4 289 64.4
arahy.Tifrunner.gnm1.ann1.JJKM7S Arachis hypogaea HOM05D005912 ORTHO05D007329 3.0e-101 372.9 310 61.6
arahy.Tifrunner.gnm1.ann1.TNL2KY Arachis hypogaea HOM05D005912 ORTHO05D007329 3.0e-101 372.9 310 61.6
Sed0007504 Sechium edule HOM05D005912 ORTHO05D007329 3.0e-101 372.9 354 55.4
A01p02950 Brassica napus HOM05D005912 ORTHO05D007329 4.0e-101 372.5 372 53.2
BolC1t00315H Brassica oleracea HOM05D005912 ORTHO05D007329 4.0e-101 372.5 367 53.1
BraA01t00278Z Brassica rapa HOM05D005912 ORTHO05D007329 4.0e-101 372.5 372 53.2
Carub.0007s0449 Capsella rubella HOM05D005912 ORTHO05D007329 4.0e-101 372.5 374 51.9
Glyma.11G082400 Glycine max HOM05D005912 ORTHO05D007329 6.8e-101 371.7 282 64.5
C01p03300 Brassica napus HOM05D005912 ORTHO05D007329 2.6e-100 369.8 375 52.0
Sc07g0001240 Simmondsia chinensis HOM05D005912 ORTHO05D007329 3.4e-100 369.4 328 56.4
AUR62029896 Chenopodium quinoa HOM05D005912 ORTHO05D007329 7.5e-100 368.2 367 52.6
MSTRG.2738 Avicennia marina HOM05D005912 ORTHO05D007329 1.7e-99 367.1 345 56.2
ECA238G3446 Erigeron canadensis HOM05D005912 ORTHO05D007329 2.2e-99 366.7 353 55.0
HanXRQChr14g0442051 Helianthus annuus HOM05D005912 ORTHO05D007329 2.8e-99 366.3 369 52.8
Psat2g151360 Pisum sativum HOM05D005912 ORTHO05D007329 8.3e-99 364.8 336 56.8
Aa31LG6G12710 Aethionema arabicum HOM05D005912 ORTHO05D007329 1.1e-98 364.4 403 49.4
Migut.L00742 Erythranthe guttata HOM05D005912 ORTHO05D007329 1.1e-98 364.4 320 57.5
TPR.G25119 Trifolium pratense HOM05D005912 ORTHO05D007329 1.1e-98 364.4 370 54.3
Lsat_1_v5_gn_2_75281 Lactuca sativa HOM05D005912 ORTHO05D007329 1.4e-98 364.0 387 50.9
Peaxi162Scf00300g00017 Petunia axillaris HOM05D005912 ORTHO05D007329 1.4e-98 364.0 254 78.0
CARHR244100 Cardamine hirsuta HOM05D005912 ORTHO05D007329 2.4e-98 363.2 347 53.3
Lj2g0008610 Lotus japonicus HOM05D005912 ORTHO05D007329 3.1e-98 362.8 286 62.9
Phvul.002G112700 Phaseolus vulgaris HOM05D005912 ORTHO05D007329 3.1e-98 362.8 298 59.7
EL10Ac5g11470 Beta vulgaris HOM05D005912 ORTHO05D007329 5.9e-97 358.6 362 55.2
Ca_24951_v3 Cicer arietinum L. HOM05D005912 ORTHO05D007329 1.1e-95 354.4 301 59.8
Medtr5g023180 Medicago truncatula HOM05D005912 ORTHO05D007329 2.5e-95 353.2 358 53.6
ATR0661G434 Amborella trichopoda HOM05D005912 ORTHO05D007329 7.2e-95 351.7 318 54.7
SalBow3G0555 Salvia bowleyana HOM05D005912 ORTHO05D007329 6.3e-91 338.6 373 48.8
CDE06G1293 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 2.4e-90 336.7 293 54.6
BraA08t34122Z Brassica rapa HOM05D005912 ORTHO05D007329 3.5e-89 332.8 375 49.3
Lalb_Chr05g0212091 Lupinus albus HOM05D005912 ORTHO05D007329 3.5e-89 332.8 367 50.1
Oeu012550.1 Olea europaea HOM05D005912 ORTHO05D007329 3.5e-89 332.8 296 56.8
HPP92_022166 Vanilla planifolia HOM05D005912 ORTHO05D007329 7.7e-89 331.6 296 56.1
AL7G15340 Arabidopsis lyrata HOM05D005912 ORTHO05D007329 3.8e-88 329.3 371 47.4
AT4G35760 Arabidopsis thaliana HOM05D005912 ORTHO05D007329 5.0e-88 328.9 358 48.9
Os03g0131500 Oryza sativa ssp. japonica HOM05D005912 ORTHO05D007329 8.6e-88 328.2 319 54.2
SGA_v2.0_scaffold108G30993 Striga asiatica HOM05D005912 ORTHO05D007329 8.6e-88 328.2 344 52.3
AUR62033809 Chenopodium quinoa HOM05D005912 ORTHO05D007329 4.2e-87 325.9 264 60.2
Zm00001eb002560 Zea mays HOM05D005912 ORTHO05D007329 6.1e-86 322.0 290 55.5
GSVIVG01002335001 Vitis vinifera HOM05D005912 ORTHO05D007329 5.7e-84 315.5 302 58.6
Cpa.g.sc6.326 Carica papaya HOM05D005912 ORTHO05D007329 1.6e-78 297.4 380 47.6
MELO3C007950.2 Cucumis melo HOM05D005912 ORTHO05D007329 2.8e-78 296.6 288 54.5
CANSAT25G2212 Cannabis sativa HOM05D005912 ORTHO05D007329 1.8e-77 293.9 238 62.6
SMO119G0150 Selaginella moellendorffii HOM05D005912 ORTHO05D007329 1.3e-72 277.7 292 47.3
unitig_88.g27769 Utricularia gibba HOM05D005912 ORTHO05D007329 1.7e-72 277.3 232 59.1
CDE03G0408 Ceratophyllum demersum HOM05D005912 ORTHO05D007329 1.9e-71 273.9 322 45.7
Mapoly0023s0120 Marchantia polymorpha HOM05D005912 ORTHO05D007329 1.0e-64 251.5 305 45.2
CBR_g79494 Chara braunii HOM05D005912 ORTHO05D007329 3.0e-64 250.0 311 42.1
Pp3c3_30980 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.7e-59 233.0 320 39.4
Glyma.01G161400 Glycine max HOM05D005912 ORTHO05D007329 4.6e-57 226.1 215 56.3
Migut.H02191 Erythranthe guttata HOM05D005912 ORTHO05D007329 6.0e-57 225.7 334 41.9
DCAR_011589 Daucus carota HOM05D005912 ORTHO05D007329 1.5e-55 221.1 242 53.3
C03p80880 Brassica napus HOM05D000088 ORTHO05D000933 6.8e-53 212.2 344 39.8
BcaC01g00519 Brassica carinata HOM05D005912 ORTHO05D007329 4.4e-52 209.5 292 44.2
A08p21710 Brassica napus HOM05D000088 ORTHO05D000933 5.8e-52 209.1 333 41.1
BolC3t20343H Brassica oleracea HOM05D000088 ORTHO05D000933 9.9e-52 208.4 328 40.5
SGA_v2.0_scaffold132G34545 Striga asiatica HOM05D005912 ORTHO05D007329 8.4e-51 205.3 178 59.6
BcaNung05729 Brassica carinata HOM05D005912 ORTHO05D007329 3.5e-49 199.9 258 46.5
MCO13G425 Micromonas commoda HOM05D005912 ORTHO05D007329 2.3e-48 197.2 292 39.4
PRCOL_00003732 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 1.3e-46 191.4 286 40.2
VMungo1215G0927 Vigna mungo HOM05D005912 ORTHO05D007329 1.3e-46 191.4 184 54.3
Cre12.g493150 Chlamydomonas reinhardtii HOM05D005912 ORTHO05D007329 3.1e-45 186.8 312 35.6
SGA_v2.0_scaffold132G34543 Striga asiatica HOM05D005912 ORTHO05D007329 2.9e-43 180.3 112 70.5
Actinidia22932 Actinidia chinensis HOM05D005912 ORTHO05D007329 1.7e-40 171.0 173 51.4
MSTRG.15589 Avicennia marina HOM05D005912 ORTHO05D007329 1.1e-39 168.3 105 71.4
SEGI_31957 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 1.8e-32 144.4 166 46.4
Pp3c1_24560 Physcomitrium patens HOM05D005912 ORTHO05D007329 3.9e-32 143.3 102 58.8
Lj2A933T26 Lonicera japonica HOM05D005912 ORTHO05D007329 4.3e-31 139.8 131 59.5
arahy.Tifrunner.gnm1.ann1.SP2XL4 Arachis hypogaea HOM05D005912 ORTHO05D007329 1.6e-30 137.9 122 60.7
Peaxi162Scf56132g00003 Petunia axillaris HOM05D005912 ORTHO05D007329 1.0e-27 128.6 72 86.1
AagrBONN_evm.TU.Sc2ySwM_340.180 Anthoceros agrestis HOM05D005912 ORTHO05D007329 6.0e-25 119.4 224 36.2
Gohir.D03G004450 Gossypium hirsutum HOM05D005912 ORTHO05D007329 1.1e-21 108.6 67 68.7
PRCOL_00002964 Prasinoderma coloniale HOM05D005912 ORTHO05D007329 3.1e-21 107.1 122 45.1
AagrBONN_evm.TU.Sc2ySwM_228.1421 Anthoceros agrestis HOM05D005912 ORTHO05D007329 5.3e-21 106.3 166 34.9
FAN28G1872 Fragaria x ananassa HOM05D005912 ORTHO05D007329 4.5e-20 103.2 67 71.6
MD15G1236200 Malus domestica HOM05D005912 ORTHO05D007329 4.5e-20 103.2 68 66.2
Hma1.2p1_4017F.1_g338140 Hydrangea macrophylla HOM05D005912 ORTHO05D007329 3.2e-18 97.1 98 53.1
SEGI_22324 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 5.5e-18 96.3 67 58.2
unitig_88.g27770 Utricularia gibba HOM05D005912 ORTHO05D007329 6.1e-17 92.8 106 48.1
Lj2P933T24 Lonicera japonica HOM05D005912 ORTHO05D007329 7.9e-17 92.4 53 69.8
Lj2A1074G31 Lonicera japonica HOM05D005912 ORTHO05D007329 3.4e-12 77.0 71 54.9
MCO11G735 Micromonas commoda HOM05D005912 ORTHO05D007329 6.5e-11 72.8 95 32.6
SEGI_06824 Sequoiadendron giganteum HOM05D005912 ORTHO05D007329 9.4e-10 68.9 76 43.4
RcHm_v2.0_Chr4g0418411 Rosa chinensis HOM05D005912 ORTHO05D007329 1.5e-07 61.6 78 50.0
RcHm_v2.0_Chr7g0224811 Rosa chinensis HOM05D005912 ORTHO05D007329 7.4e-07 59.3 78 50.0


User provided reference genes

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