Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G889.11 Capsicum annuum HOM05D007552 ORTHO05D009397 2.0e-230 802.7 648 100.0
PGSC0003DMG400032099 Solanum tuberosum HOM05D007552 ORTHO05D009397 2.4e-183 646.4 637 89.2
Sopen01g032250 Solanum pennellii HOM05D007552 ORTHO05D009397 1.7e-181 640.2 658 81.5
Solyc01g080450.4 Solanum lycopersicum HOM05D007552 ORTHO05D009397 6.8e-170 601.7 598 83.9
Nitab4.5_0000059g0200 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.0e-169 600.1 673 82.8
Nitab4.5_0007324g0010 Nicotiana tabacum HOM05D007552 ORTHO05D009397 8.1e-163 578.2 661 82.8
CAN.G497.96 Capsicum annuum HOM05D007552 ORTHO05D009397 9.0e-130 468.4 514 58.6
Peaxi162Scf00095g00416 Petunia axillaris HOM05D007552 ORTHO05D009397 2.6e-129 466.8 558 84.8
Nitab4.5_0007324g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 2.3e-125 453.8 637 64.5
Dinv11901 Davidia involucrata HOM05D007552 ORTHO05D009397 9.3e-111 405.2 628 70.2
CSS0020938 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 2.7e-102 377.1 652 65.0
Thecc.10G186400 Theobroma cacao HOM05D007552 ORTHO05D009397 4.2e-95 353.2 649 51.8
Duzib128G1161 Durio zibethinus HOM05D007552 ORTHO05D009397 8.0e-94 349.0 617 53.3
Hma1.2p1_0517F.1_g170780 Hydrangea macrophylla HOM05D007552 ORTHO05D009397 6.3e-91 339.3 402 68.2
COL.COLO4_19487 Corchorus olitorius HOM05D007552 ORTHO05D009397 4.5e-89 333.2 609 65.2
Actinidia38807 Actinidia chinensis HOM05D007552 ORTHO05D009397 5.5e-87 326.2 633 63.2
Actinidia35910 Actinidia chinensis HOM05D007552 ORTHO05D009397 6.1e-86 322.8 600 66.7
GSVIVG01029542001 Vitis vinifera HOM05D007552 ORTHO05D009397 5.2e-85 319.7 642 61.1
Lj5P680T20 Lonicera japonica HOM05D007552 ORTHO05D009397 5.7e-84 316.2 392 71.9
Duzib114G0042 Durio zibethinus HOM05D007552 ORTHO05D009397 1.8e-82 311.2 393 70.2
TAR626G0934 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.6e-81 308.1 402 69.2
Gohir.A05G404600 Gossypium hirsutum HOM05D007552 ORTHO05D009397 2.0e-76 291.2 640 51.4
Gorai.012G013300 Gossypium raimondii HOM05D007552 ORTHO05D009397 2.0e-76 291.2 425 64.0
Gohir.D04G011100 Gossypium hirsutum HOM05D007552 ORTHO05D009397 5.7e-76 289.7 425 63.5
QL07p010391 Quercus lobata HOM05D007552 ORTHO05D009397 2.8e-75 287.3 623 58.9
Manes.13G083600 Manihot esculenta HOM05D007552 ORTHO05D009397 6.3e-75 286.2 650 48.0
Rhsim08G0249900 Rhododendron simsii HOM05D007552 ORTHO05D009397 1.4e-74 285.0 395 69.4
MSTRG.22501 Avicennia marina HOM05D007552 ORTHO05D009397 5.4e-74 283.1 436 55.3
Cc02_g21230 Coffea canephora HOM05D007552 ORTHO05D009397 2.0e-73 281.2 386 65.3
Prupe.3G022400 Prunus persica HOM05D007552 ORTHO05D009397 5.0e-72 276.6 637 59.7
QL93p2016_0066 Quercus lobata HOM05D007552 ORTHO05D009397 3.3e-71 273.9 413 64.9
QL08p045079 Quercus lobata HOM05D007552 ORTHO05D009397 1.4e-69 268.5 412 64.3
MD09G1165000 Malus domestica HOM05D007552 ORTHO05D009397 5.7e-68 263.1 612 60.1
Eucgr.F04004 Eucalyptus grandis HOM05D007552 ORTHO05D009397 1.3e-67 261.9 395 61.8
Oeu058208.1 Olea europaea HOM05D007552 ORTHO05D009397 2.0e-65 254.6 561 58.3
SalBow3G0468 Salvia bowleyana HOM05D007552 ORTHO05D009397 4.5e-65 253.4 617 48.9
Migut.I01195 Erythranthe guttata HOM05D007552 ORTHO05D009397 6.6e-64 249.6 403 58.3
Haze_13567 Corylus avellana HOM05D007552 ORTHO05D009397 8.6e-64 249.2 397 63.2
Sc01g0005200 Simmondsia chinensis HOM05D007552 ORTHO05D009397 1.5e-63 248.4 438 57.5
QL08p045116 Quercus lobata HOM05D007552 ORTHO05D009397 2.3e-61 241.1 385 65.7
CsaV3_1G037150 Cucumis sativus L. HOM05D007552 ORTHO05D009397 4.4e-60 236.9 616 56.0
PGR102G1581 Punica granatum HOM05D007552 ORTHO05D009397 4.4e-60 236.9 620 56.6
Sed0018321 Sechium edule HOM05D007552 ORTHO05D009397 3.7e-59 233.8 652 51.2
Sed0019272 Sechium edule HOM05D007552 ORTHO05D009397 1.1e-58 232.3 616 54.1
vmacro06800 Vaccinium macrocarpon HOM05D007552 ORTHO05D009397 2.4e-58 231.1 388 66.0
Ciclev10033582m.g Citrus clementina HOM05D007552 ORTHO05D009397 1.5e-55 221.9 487 62.6
MELO3C002831.2 Cucumis melo HOM05D007552 ORTHO05D009397 1.6e-54 218.4 399 60.9
Ciclev10033432m.g Citrus clementina HOM05D007552 ORTHO05D009397 2.8e-54 217.6 487 60.4
Nitab4.5_0002731g0040 Nicotiana tabacum HOM05D007552 ORTHO05D009397 8.0e-54 216.1 522 34.7
Lalb_Chr03g0029771 Lupinus albus HOM05D007552 ORTHO05D009397 5.2e-53 213.4 626 55.9
TWI75G0828 Tripterygium wilfordii HOM05D007552 ORTHO05D009397 1.5e-52 211.8 533 48.2
CANSAT54G1473 Cannabis sativa HOM05D007552 ORTHO05D009397 9.2e-50 202.6 435 52.2
MBI04_g20974_MAGBIO Magnolia biondii HOM05D007552 ORTHO05D009397 6.6e-48 196.4 389 61.4
Hund18597 Selenicereus undatus HOM05D007552 ORTHO05D009397 9.5e-47 192.6 161 54.7
THA.LOC104812327 Tarenaya hassleriana HOM05D007552 ORTHO05D009397 9.5e-47 192.6 548 44.7
MD17G1163100 Malus domestica HOM05D007552 ORTHO05D009397 3.6e-46 190.7 205 47.3
VMungo1080G1651 Vigna mungo HOM05D007552 ORTHO05D009397 4.7e-46 190.3 612 47.5
SalBow3G2744 Salvia bowleyana HOM05D007552 ORTHO05D009397 5.2e-45 186.8 349 60.5
Glyma.17G219900 Glycine max HOM05D007552 ORTHO05D009397 3.2e-42 177.6 615 47.3
Nn1g09670 Nelumbo nucifera HOM05D007552 ORTHO05D009397 5.6e-39 166.8 212 43.4
Glyma.19G019400 Glycine max HOM05D007552 ORTHO05D009397 1.2e-38 165.6 554 50.9
Phvul.005G185300 Phaseolus vulgaris HOM05D007552 ORTHO05D009397 4.0e-37 160.6 610 49.3
Aa31LG7G1270 Aethionema arabicum HOM05D007552 ORTHO05D009397 6.8e-37 159.8 539 39.9
Carub.0001s1657 Capsella rubella HOM05D007552 ORTHO05D009397 5.8e-36 156.8 582 43.1
Lj5g0015623 Lotus japonicus HOM05D007552 ORTHO05D009397 2.9e-35 154.5 598 45.7
HPP92_024564 Vanilla planifolia HOM05D007552 ORTHO05D009397 4.9e-35 153.7 169 43.8
ATR0776G035 Amborella trichopoda HOM05D007552 ORTHO05D009397 8.4e-35 152.9 379 55.7
CSS0021108 Camellia sinensis var. sinensis HOM05D007552 ORTHO05D009397 1.4e-34 152.1 262 34.4
CARHR017300 Cardamine hirsuta HOM05D007552 ORTHO05D009397 1.6e-33 148.7 540 41.7
Zm00001eb025110 Zea mays HOM05D007552 ORTHO05D009397 5.1e-32 143.7 166 39.2
Os10g0578500 Oryza sativa ssp. japonica HOM05D007552 ORTHO05D009397 6.6e-32 143.3 150 42.7
Cpa.g.sc155.17 Carica papaya HOM05D007552 ORTHO05D009397 5.6e-31 140.2 108 59.3
AL1G29000 Arabidopsis lyrata HOM05D007552 ORTHO05D009397 1.6e-30 138.7 171 39.8
TAR626G0440 Trochodendron aralioides HOM05D007552 ORTHO05D009397 4.7e-30 137.1 107 57.9
AT1G16830 Arabidopsis thaliana HOM05D007552 ORTHO05D009397 7.6e-28 129.8 202 36.1
Medtr7g025610 Medicago truncatula HOM05D007552 ORTHO05D009397 3.2e-26 124.4 594 31.3
C05p15050 Brassica napus HOM05D007552 ORTHO05D009397 4.2e-26 124.0 600 21.3
TPR.G37558 Trifolium pratense HOM05D007552 ORTHO05D009397 5.4e-26 123.6 576 38.0
A06p12740 Brassica napus HOM05D007552 ORTHO05D009397 7.1e-26 123.2 600 21.0
BraA06t24434Z Brassica rapa HOM05D007552 ORTHO05D009397 9.3e-26 122.9 600 20.7
TAR362G0754 Trochodendron aralioides HOM05D007552 ORTHO05D009397 1.5e-23 115.5 141 41.1
BcaC05g25539 Brassica carinata HOM05D007552 ORTHO05D009397 9.6e-23 112.8 559 22.4
BolC5t30220H Brassica oleracea HOM05D007552 ORTHO05D009397 9.6e-23 112.8 559 22.4
Psat3g178720 Pisum sativum HOM05D007552 ORTHO05D009397 2.8e-22 111.3 664 38.3
Ca_25555_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 8.1e-22 109.8 515 43.5
Thhalv10007086m.g Eutrema salsugineum HOM05D007552 ORTHO05D009397 1.1e-21 109.4 542 21.4
Ca_26412_v3 Cicer arietinum L. HOM05D007552 ORTHO05D009397 4.5e-20 104.0 504 41.7
Sp1g14970 Schrenkiella parvula HOM05D007552 ORTHO05D009397 9.9e-20 102.8 582 31.6
BcaB02g06673 Brassica carinata HOM05D007552 ORTHO05D009397 2.2e-19 101.7 568 33.1
Actinidia21884 Actinidia chinensis HOM05D007552 ORTHO05D009397 2.9e-19 101.3 64 68.8
MD17G1163200 Malus domestica HOM05D007552 ORTHO05D009397 9.3e-18 96.3 76 56.6
BcaB01g00677 Brassica carinata HOM05D000424 ORTHO05D000355 3.8e-11 74.3 187 28.3
Carub.0005s1609 Capsella rubella HOM05D000424 ORTHO05D000355 1.1e-10 72.8 173 28.9
Thhalv10010190m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 5.5e-10 70.5 194 26.3
Sp5g12350 Schrenkiella parvula HOM05D000424 ORTHO05D000355 7.1e-10 70.1 173 27.7
Aqoxy2G03436 Aquilegia oxysepala HOM05D000424 ORTHO05D000355 9.3e-10 69.7 185 27.0
PSO782G4392 Papaver somniferum HOM05D007202 ORTHO05D009125 1.2e-09 69.3 133 32.3
Mapoly0026s0011 Marchantia polymorpha HOM05D006999 ORTHO05D008936 2.7e-09 68.2 107 29.9
PGR102G2719 Punica granatum HOM05D000424 ORTHO05D000355 3.5e-09 67.8 175 25.7
MBI07_g03828_MAGBIO Magnolia biondii HOM05D007202 ORTHO05D009125 4.6e-09 67.4 169 28.4
Thhalv10003830m.g Eutrema salsugineum HOM05D000424 ORTHO05D000355 6.0e-09 67.0 173 25.4
CSS0029634 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 7.9e-09 66.6 203 26.1
BolC8t50090H Brassica oleracea HOM05D000424 ORTHO05D000355 1.0e-08 66.2 173 26.6
AUR62007548 Chenopodium quinoa HOM05D000424 ORTHO05D000355 1.0e-08 66.2 175 26.9
Eucgr.H02347 Eucalyptus grandis HOM05D000424 ORTHO05D000355 1.0e-08 66.2 175 25.7
C08p24760 Brassica napus HOM05D000424 ORTHO05D000355 1.3e-08 65.9 173 26.6
HanXRQChr02g0043781 Helianthus annuus HOM05D007383 ORTHO05D009254 1.8e-08 65.5 183 27.9
HanXRQChr14g0455831 Helianthus annuus HOM05D007383 ORTHO05D009254 1.8e-08 65.5 183 27.9
QL08p038611 Quercus lobata HOM05D000424 ORTHO05D000355 1.8e-08 65.5 175 24.6
CSS0050477 Camellia sinensis var. sinensis HOM05D007173 ORTHO05D009151 2.3e-08 65.1 203 25.6
AUR62004038 Chenopodium quinoa HOM05D000424 ORTHO05D000355 2.3e-08 65.1 175 26.9
QL02p049542 Quercus lobata HOM05D000424 ORTHO05D000355 2.3e-08 65.1 175 24.6
AT5G65820 Arabidopsis thaliana HOM05D000424 ORTHO05D000355 3.9e-08 64.3 173 24.3
Potri.002G176100 Populus trichocarpa HOM05D000424 ORTHO05D000355 3.9e-08 64.3 142 24.6
Sp2g28910 Schrenkiella parvula HOM05D000424 ORTHO05D000355 3.9e-08 64.3 173 24.9
DCAR_025825 Daucus carota HOM05D000424 ORTHO05D000355 5.1e-08 63.9 175 24.6
Aa31LG4G18220 Aethionema arabicum HOM05D000424 ORTHO05D000355 8.7e-08 63.2 141 28.4
SEGI_35089 Sequoiadendron giganteum HOM05D007552 ORTHO05D009397 8.7e-08 63.2 88 30.7
Carub.0008s2671 Capsella rubella HOM05D000424 ORTHO05D000355 1.5e-07 62.4 173 24.3
EL10Ac7g17845 Beta vulgaris HOM05D000424 ORTHO05D000355 1.9e-07 62.0 139 28.8
CiPaw.01G197700 Carya illinoinensis HOM05D000424 ORTHO05D000355 1.9e-07 62.0 185 24.9
Gohir.D02G188900 Gossypium hirsutum HOM05D007202 ORTHO05D009125 1.9e-07 62.0 134 28.4
Gorai.005G211700 Gossypium raimondii HOM05D007202 ORTHO05D009125 2.5e-07 61.6 134 28.4
AL8G43540 Arabidopsis lyrata HOM05D000424 ORTHO05D000355 3.3e-07 61.2 173 24.3
arahy.Tifrunner.gnm1.ann1.U9PBTF Arachis hypogaea HOM05D007202 ORTHO05D009125 3.3e-07 61.2 133 30.1
Lj7A578T58 Lonicera japonica HOM05D005973 ORTHO05D007285 3.3e-07 61.2 180 24.4
QL06p001583 Quercus lobata HOM05D000424 ORTHO05D000355 3.3e-07 61.2 114 30.7
Gohir.A03G165700 Gossypium hirsutum HOM05D007202 ORTHO05D009125 4.3e-07 60.8 136 28.7
THA.LOC104808562 Tarenaya hassleriana HOM05D000424 ORTHO05D000355 4.3e-07 60.8 137 25.5
arahy.Tifrunner.gnm1.ann1.EU7MKH Arachis hypogaea HOM05D007202 ORTHO05D009125 5.6e-07 60.5 133 30.1
BcaC07g39437 Brassica carinata HOM05D000424 ORTHO05D000355 5.6e-07 60.5 151 27.8
Sc09g0001040 Simmondsia chinensis HOM05D006596 ORTHO05D008497 5.6e-07 60.5 174 25.3
Cfa008465 Carpinus fangiana HOM05D000424 ORTHO05D000355 7.4e-07 60.1 185 23.2
Thecc.02G157500 Theobroma cacao HOM05D007202 ORTHO05D009125 7.4e-07 60.1 136 28.7
Nn7g37484 Nelumbo nucifera HOM05D007202 ORTHO05D009125 9.6e-07 59.7 139 27.3
Aa31LG1G16260 Aethionema arabicum HOM05D001904 ORTHO05D001854 1.3e-06 59.3 173 25.4
Ah.08g214310 Amaranthus hybridus HOM05D000424 ORTHO05D000355 1.3e-06 59.3 174 24.7
Rhsim09G0070400 Rhododendron simsii HOM05D007202 ORTHO05D009125 1.3e-06 59.3 137 30.7
Duzib132G0783 Durio zibethinus HOM05D007202 ORTHO05D009125 1.6e-06 58.9 136 28.7
Manes.06G147400 Manihot esculenta HOM05D005770 ORTHO05D006702 1.6e-06 58.9 155 27.1
Ca_24414_v3 Cicer arietinum L. HOM05D000424 ORTHO05D000355 2.1e-06 58.5 187 24.1
SalBow1G1508 Salvia bowleyana HOM05D006596 ORTHO05D008497 2.1e-06 58.5 164 26.8
SEGI_34039 Sequoiadendron giganteum HOM05D000424 ORTHO05D000355 2.1e-06 58.5 173 23.7
CARHR279810 Cardamine hirsuta HOM05D000424 ORTHO05D000355 2.8e-06 58.2 151 26.5
CsaV3_3G038200 Cucumis sativus L. HOM05D006596 ORTHO05D008497 2.8e-06 58.2 169 25.4
Phvul.006G087100 Phaseolus vulgaris HOM05D000424 ORTHO05D000355 2.8e-06 58.2 164 27.4
PGR042G3217 Punica granatum HOM05D000424 ORTHO05D000355 2.8e-06 58.2 132 27.3
AUR62017720 Chenopodium quinoa HOM05D007202 ORTHO05D009125 3.7e-06 57.8 135 28.9
ECA247G2801 Erigeron canadensis HOM05D007383 ORTHO05D009254 3.7e-06 57.8 172 26.7
MBI13_g05941_MAGBIO Magnolia biondii HOM05D000076 ORTHO05D000355 3.7e-06 57.8 164 29.3
HPP92_016385 Vanilla planifolia HOM05D007173 ORTHO05D009151 3.7e-06 57.8 179 25.1
EL10Ac9g22973 Beta vulgaris HOM05D007202 ORTHO05D009125 4.8e-06 57.4 133 27.8
Lalb_Chr02g0143591 Lupinus albus HOM05D007202 ORTHO05D009125 4.8e-06 57.4 153 28.8
BcaB02g09900 Brassica carinata HOM05D000424 ORTHO05D000355 6.2e-06 57.0 173 24.3
CSS0032654 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 6.2e-06 57.0 171 25.1
Carub.0006s3579 Capsella rubella HOM05D002391 ORTHO05D003966 6.2e-06 57.0 189 24.9
CiPaw.05G116100 Carya illinoinensis HOM05D000424 ORTHO05D008586 6.2e-06 57.0 137 25.5
COL.COLO4_21446 Corchorus olitorius HOM05D007383 ORTHO05D009254 6.2e-06 57.0 178 24.7
MELO3C009563.2 Cucumis melo HOM05D006596 ORTHO05D008497 6.2e-06 57.0 169 24.3
Glyma.16G043600 Glycine max HOM05D000424 ORTHO05D000355 6.2e-06 57.0 92 34.8
Manes.14G070900 Manihot esculenta HOM05D007383 ORTHO05D009254 6.2e-06 57.0 193 24.4
CSS0048316 Camellia sinensis var. sinensis HOM05D007202 ORTHO05D009125 8.2e-06 56.6 171 25.1
CsaV3_2G032830 Cucumis sativus L. HOM05D000424 ORTHO05D000355 8.2e-06 56.6 175 23.4
Dinv20703 Davidia involucrata HOM05D007383 ORTHO05D009254 8.2e-06 56.6 149 28.2
Glyma.11G189200 Glycine max HOM05D007383 ORTHO05D009254 8.2e-06 56.6 169 28.4
Glyma.20G104200 Glycine max HOM05D007202 ORTHO05D009125 8.2e-06 56.6 135 29.6
Oeu014921.1 Olea europaea HOM05D000424 ORTHO05D000355 8.2e-06 56.6 85 35.3
TPR.G4127 Trifolium pratense HOM05D007202 ORTHO05D009125 8.2e-06 56.6 133 29.3


User provided reference genes

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