Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G888.12 Capsicum annuum HOM05D002821 ORTHO05D003072 1.4e-48 196.4 98 100.0
Solyc09g007670.3 Solanum lycopersicum HOM05D002821 ORTHO05D003072 9.7e-26 120.6 65 93.8
Sopen09g002550 Solanum pennellii HOM05D002821 ORTHO05D003072 6.5e-22 107.8 55 96.4
PGSC0003DMG400001755 Solanum tuberosum HOM05D002821 ORTHO05D003072 4.2e-21 105.1 55 92.7
SalBow3G3301 Salvia bowleyana HOM05D002821 ORTHO05D003072 3.9e-19 98.6 66 78.8
Migut.J00555 Erythranthe guttata HOM05D002821 ORTHO05D003072 6.7e-19 97.8 65 80.0
SGA_v2.0_scaffold75G24869 Striga asiatica HOM05D002821 ORTHO05D003072 2.5e-18 95.9 65 76.9
Cc06_g03840 Coffea canephora HOM05D002821 ORTHO05D003072 9.7e-18 94.0 65 75.4
Oeu001348.2 Olea europaea HOM05D002821 ORTHO05D003072 9.7e-18 94.0 65 75.4
Nitab4.5_0000101g0030 Nicotiana tabacum HOM05D002821 ORTHO05D003072 2.2e-17 92.8 52 88.5
Peaxi162Scf00182g00113 Petunia axillaris HOM05D002821 ORTHO05D003072 2.2e-17 92.8 64 76.6
SGA_v2.0_scaffold126G33922 Striga asiatica HOM05D002821 ORTHO05D003072 2.2e-17 92.8 65 75.4
Lj1g0009239 Lotus japonicus HOM05D002821 ORTHO05D003072 2.8e-17 92.4 65 76.9
CSS0020023 Camellia sinensis var. sinensis HOM05D002821 ORTHO05D003072 6.3e-17 91.3 43 95.3
FvH4_6g15710 Fragaria vesca HOM05D002821 ORTHO05D003072 8.2e-17 90.9 59 74.6
FAN14G2201 Fragaria x ananassa HOM05D002821 ORTHO05D003072 8.2e-17 90.9 59 74.6
MD04G1099900 Malus domestica HOM05D002821 ORTHO05D003072 1.1e-16 90.5 44 93.2
Nitab4.5_0005150g0060 Nicotiana tabacum HOM05D002821 ORTHO05D003072 1.8e-16 89.7 46 89.1
TAR623G1157 Trochodendron aralioides HOM05D002821 ORTHO05D003072 1.8e-16 89.7 54 79.6
MBI11_g23473_MAGBIO Magnolia biondii HOM05D002821 ORTHO05D003072 2.4e-16 89.4 47 85.1
Nitab4.5_0000754g0090 Nicotiana tabacum HOM05D002821 ORTHO05D003072 2.4e-16 89.4 65 72.3
Nitab4.5_0013087g0010 Nicotiana tabacum HOM05D002821 ORTHO05D003072 2.4e-16 89.4 65 72.3
arahy.Tifrunner.gnm1.ann1.22I0LH Arachis hypogaea HOM05D002821 ORTHO05D003072 4.1e-16 88.6 54 79.6
arahy.Tifrunner.gnm1.ann1.AE9G4B Arachis hypogaea HOM05D002821 ORTHO05D003072 4.1e-16 88.6 54 79.6
Duzib106G1856 Durio zibethinus HOM05D002821 ORTHO05D003072 4.1e-16 88.6 47 87.2
Prupe.6G238200 Prunus persica HOM05D002821 ORTHO05D003072 4.1e-16 88.6 54 77.8
unitig_22.g5085 Utricularia gibba HOM05D002821 ORTHO05D003072 4.1e-16 88.6 64 73.4
Duzib128G1944 Durio zibethinus HOM05D002821 ORTHO05D003072 6.9e-16 87.8 59 78.0
MD12G1120000 Malus domestica HOM05D002821 ORTHO05D003072 6.9e-16 87.8 46 84.8
Nn2g10752 Nelumbo nucifera HOM05D002821 ORTHO05D003072 6.9e-16 87.8 54 81.5
TWI53G1126 Tripterygium wilfordii HOM05D002821 ORTHO05D003072 9.1e-16 87.4 54 77.8
Rhsim05G0182300 Rhododendron simsii HOM05D002821 ORTHO05D003072 1.5e-15 86.7 41 92.7
TWI74G1325 Tripterygium wilfordii HOM05D002821 ORTHO05D003072 1.5e-15 86.7 54 77.8
VMungo1383G0431 Vigna mungo HOM05D002821 ORTHO05D003072 1.5e-15 86.7 47 85.1
GSVIVG01025672001 Vitis vinifera HOM05D002821 ORTHO05D003072 1.5e-15 86.7 65 73.8
Glyma.03G180100 Glycine max HOM05D002821 ORTHO05D003072 2.0e-15 86.3 65 72.3
Nn2g13069 Nelumbo nucifera HOM05D002821 ORTHO05D003072 2.0e-15 86.3 54 77.8
Oeu035133.1 Olea europaea HOM05D002821 ORTHO05D003072 2.0e-15 86.3 63 73.0
Sabra16G0094400 Salix brachista HOM05D002821 ORTHO05D003072 2.0e-15 86.3 42 90.5
TAR369G0659 Trochodendron aralioides HOM05D002821 ORTHO05D003072 2.0e-15 86.3 54 77.8
Cpa.g.sc226.2 Carica papaya HOM05D002821 ORTHO05D003072 2.6e-15 85.9 59 76.3
Dinv37277 Davidia involucrata HOM05D002821 ORTHO05D003072 2.6e-15 85.9 65 70.8
Duzib093G0865 Durio zibethinus HOM05D002821 ORTHO05D003072 2.6e-15 85.9 59 76.3
FAN02G3137 Fragaria x ananassa HOM05D002821 ORTHO05D003072 2.6e-15 85.9 42 90.5
FAN05G3295 Fragaria x ananassa HOM05D002821 ORTHO05D003072 2.6e-15 85.9 42 90.5
Gohir.D09G146200 Gossypium hirsutum HOM05D002821 ORTHO05D003072 2.6e-15 85.9 59 76.3
Gorai.006G167400 Gossypium raimondii HOM05D002821 ORTHO05D003072 2.6e-15 85.9 59 76.3
Glyma.19G180800 Glycine max HOM05D002821 ORTHO05D003072 4.5e-15 85.1 65 73.8
Manes.09G069301 Manihot esculenta HOM05D002821 ORTHO05D003072 4.5e-15 85.1 57 75.4
Manes.08G006000 Manihot esculenta HOM05D002821 ORTHO05D003072 5.9e-15 84.7 57 75.4
Thecc.05G057700 Theobroma cacao HOM05D002821 ORTHO05D003072 5.9e-15 84.7 59 74.6
vmacro20033 Vaccinium macrocarpon HOM05D002821 ORTHO05D003072 5.9e-15 84.7 55 76.4
Atru.chr8.1879 Acer truncatum HOM05D002821 ORTHO05D003072 7.7e-15 84.3 57 75.4
Potri.016G088800 Populus trichocarpa HOM05D002821 ORTHO05D003072 7.7e-15 84.3 59 74.6
FAN09G4486 Fragaria x ananassa HOM05D002821 ORTHO05D003072 1.0e-14 84.0 55 74.5
Gohir.A09G150500 Gossypium hirsutum HOM05D002821 ORTHO05D003072 1.0e-14 84.0 59 74.6
RcHm_v2.0_Chr3g0469411 Rosa chinensis HOM05D002821 ORTHO05D003072 1.0e-14 84.0 59 69.5
Gohir.A04G074800 Gossypium hirsutum HOM05D002821 ORTHO05D003072 1.3e-14 83.6 65 70.8
Gohir.D04G113600 Gossypium hirsutum HOM05D002821 ORTHO05D003072 1.3e-14 83.6 65 70.8
Gohir.D13G023900 Gossypium hirsutum HOM05D002821 ORTHO05D003072 1.3e-14 83.6 46 82.6
Gorai.009G418400 Gossypium raimondii HOM05D002821 ORTHO05D003072 1.3e-14 83.6 65 70.8
Gorai.013G027000 Gossypium raimondii HOM05D002821 ORTHO05D003072 1.3e-14 83.6 46 82.6
Sp4g19470 Schrenkiella parvula HOM05D002821 ORTHO05D003072 1.3e-14 83.6 65 66.2
Gohir.A13G025200 Gossypium hirsutum HOM05D002821 ORTHO05D003072 1.7e-14 83.2 46 82.6
Oeu059976.2 Olea europaea HOM05D002821 ORTHO05D003072 1.7e-14 83.2 64 67.2
CANSAT80G0249 Cannabis sativa HOM05D002821 ORTHO05D003072 2.2e-14 82.8 59 71.2
Ciclev10012519m.g Citrus clementina HOM05D002821 ORTHO05D003072 2.2e-14 82.8 58 75.9
COL.COLO4_27040 Corchorus olitorius HOM05D002821 ORTHO05D003072 2.2e-14 82.8 62 69.4
MBI02_g18298_MAGBIO Magnolia biondii HOM05D002821 ORTHO05D003072 2.2e-14 82.8 52 73.1
MSTRG.5735 Avicennia marina HOM05D002821 ORTHO05D003072 2.9e-14 82.4 66 66.7
Carub.0004s1905 Capsella rubella HOM05D002821 ORTHO05D003072 3.8e-14 82.0 65 64.6
Peaxi162Scf00488g00915 Petunia axillaris HOM05D002821 ORTHO05D003072 3.8e-14 82.0 54 74.1
QL07p044666 Quercus lobata HOM05D002821 ORTHO05D003072 3.8e-14 82.0 65 66.2
Actinidia05260 Actinidia chinensis HOM05D002821 ORTHO05D003072 5.0e-14 81.6 50 74.0
AL4G33520 Arabidopsis lyrata HOM05D002821 ORTHO05D003072 5.0e-14 81.6 57 68.4
AT2G37160 Arabidopsis thaliana HOM05D002821 ORTHO05D003072 5.0e-14 81.6 65 64.6
DCAR_017711 Daucus carota HOM05D002821 ORTHO05D003072 5.0e-14 81.6 55 70.9
Sabra06G0101600 Salix brachista HOM05D002821 ORTHO05D003072 5.0e-14 81.6 59 71.2
CiPaw.09G177300 Carya illinoinensis HOM05D002821 ORTHO05D003072 6.5e-14 81.3 65 69.2
CiPaw.10G134500 Carya illinoinensis HOM05D002821 ORTHO05D003072 6.5e-14 81.3 65 70.8
Haze_20612 Corylus avellana HOM05D002821 ORTHO05D003072 6.5e-14 81.3 59 72.9
Potri.006G129100 Populus trichocarpa HOM05D002821 ORTHO05D003072 6.5e-14 81.3 59 71.2
THA.LOC104806502 Tarenaya hassleriana HOM05D002821 ORTHO05D003072 6.5e-14 81.3 65 64.6
SEGI_30024 Sequoiadendron giganteum HOM05D002821 ORTHO05D003072 8.5e-14 80.9 44 81.8
HPP92_016107 Vanilla planifolia HOM05D002821 ORTHO05D003072 8.5e-14 80.9 59 62.7
CARHR131670 Cardamine hirsuta HOM05D002821 ORTHO05D003072 1.1e-13 80.5 57 66.7
Lsat_1_v5_gn_1_54380 Lactuca sativa HOM05D002821 ORTHO05D003072 1.1e-13 80.5 45 77.8
AT3G53390 Arabidopsis thaliana HOM05D002821 ORTHO05D003072 1.9e-13 79.7 65 63.1
Thhalv10010255m.g Eutrema salsugineum HOM05D002821 ORTHO05D003072 1.9e-13 79.7 65 63.1
Phvul.001G176500 Phaseolus vulgaris HOM05D002821 ORTHO05D003072 1.9e-13 79.7 65 70.8
Sp5g08950 Schrenkiella parvula HOM05D002821 ORTHO05D003072 1.9e-13 79.7 65 63.1
BcaB01g00281 Brassica carinata HOM05D002821 ORTHO05D003072 2.5e-13 79.3 63 66.7
A09p46390 Brassica napus HOM05D002821 ORTHO05D003072 2.5e-13 79.3 63 66.7
C08p28730 Brassica napus HOM05D002821 ORTHO05D003072 2.5e-13 79.3 63 66.7
BolC8t50477H Brassica oleracea HOM05D002821 ORTHO05D003072 2.5e-13 79.3 63 66.7
BraA09t40104Z Brassica rapa HOM05D002821 ORTHO05D003072 2.5e-13 79.3 63 66.7
CARHR163270 Cardamine hirsuta HOM05D002821 ORTHO05D003072 2.5e-13 79.3 64 64.1
Thhalv10016480m.g Eutrema salsugineum HOM05D002821 ORTHO05D003072 2.5e-13 79.3 65 63.1
Carub.0005s1994 Capsella rubella HOM05D002821 ORTHO05D003072 4.2e-13 78.6 65 63.1
Sopen10g035440 Solanum pennellii HOM05D002821 ORTHO05D003072 4.2e-13 78.6 59 67.8
Solyc10g086070.2 Solanum lycopersicum HOM05D002821 ORTHO05D003072 5.5e-13 78.2 45 77.8
Lalb_Chr01g0018911 Lupinus albus HOM05D002821 ORTHO05D003072 7.2e-13 77.8 65 66.2
HPP92_004435 Vanilla planifolia HOM05D002821 ORTHO05D003072 7.2e-13 77.8 51 68.6
AL5G34300 Arabidopsis lyrata HOM05D002821 ORTHO05D003072 9.4e-13 77.4 65 61.5
Cfa017537 Carpinus fangiana HOM05D002821 ORTHO05D003072 9.4e-13 77.4 59 71.2
PSO339G1802 Papaver somniferum HOM05D002821 ORTHO05D003072 9.4e-13 77.4 72 58.3
Ah.15g092250 Amaranthus hybridus HOM05D002821 ORTHO05D003072 1.2e-12 77.0 64 62.5
BolC4t25491H Brassica oleracea HOM05D002821 ORTHO05D003072 1.2e-12 77.0 66 57.6
Aqoxy4G03252 Aquilegia oxysepala HOM05D002821 ORTHO05D003072 1.6e-12 76.6 65 64.6
A04p06170 Brassica napus HOM05D002821 ORTHO05D003072 1.6e-12 76.6 65 61.5
BraA04t16320Z Brassica rapa HOM05D002821 ORTHO05D003072 1.6e-12 76.6 65 61.5
CiPaw.13G110900 Carya illinoinensis HOM05D002821 ORTHO05D003072 2.1e-12 76.3 74 52.7
TAR636G2024 Trochodendron aralioides HOM05D002821 ORTHO05D003072 2.1e-12 76.3 64 65.6
BcaC02g09169 Brassica carinata HOM05D002821 ORTHO05D003072 2.7e-12 75.9 57 63.2
C04p39190 Brassica napus HOM05D002821 ORTHO05D003072 2.7e-12 75.9 57 63.2
GSVIVG01025168001 Vitis vinifera HOM05D002821 ORTHO05D003072 2.7e-12 75.9 72 59.7
Actinidia19683 Actinidia chinensis HOM05D002821 ORTHO05D003072 3.6e-12 75.5 47 70.2
CSS0018896 Camellia sinensis var. sinensis HOM05D002821 ORTHO05D003072 3.6e-12 75.5 49 71.4
CAN.G933.2 Capsicum annuum HOM05D002821 ORTHO05D003072 3.6e-12 75.5 40 82.5
Sc20g0005190 Simmondsia chinensis HOM05D002821 ORTHO05D003072 3.6e-12 75.5 65 63.1
BcaB02g08528 Brassica carinata HOM05D002821 ORTHO05D003072 4.7e-12 75.1 65 61.5
Aa31LG5G22470 Aethionema arabicum HOM05D002821 ORTHO05D003072 7.9e-12 74.3 65 63.1
Eucgr.K03239 Eucalyptus grandis HOM05D002821 ORTHO05D003072 7.9e-12 74.3 38 84.2
PSO384G3922 Papaver somniferum HOM05D002821 ORTHO05D003072 7.9e-12 74.3 73 56.2
EL10Ac7g16538 Beta vulgaris HOM05D002821 ORTHO05D003072 1.0e-11 73.9 36 86.1
BcaB04g19838 Brassica carinata HOM05D002821 ORTHO05D003072 1.0e-11 73.9 65 60.0
Dinv32762 Davidia involucrata HOM05D002821 ORTHO05D003072 1.0e-11 73.9 65 66.2
Ca_08840_v3 Cicer arietinum L. HOM05D002821 ORTHO05D003072 2.3e-11 72.8 45 73.3
ECA233G5123 Erigeron canadensis HOM05D002821 ORTHO05D003072 2.3e-11 72.8 41 75.6
HanXRQChr01g0027381 Helianthus annuus HOM05D002821 ORTHO05D003072 3.9e-11 72.0 55 65.5
Lj1C188G5 Lonicera japonica HOM05D002821 ORTHO05D003072 5.1e-11 71.6 57 61.4
Mapoly0033s0141 Marchantia polymorpha HOM05D002821 ORTHO05D003072 6.7e-11 71.2 42 66.7
Psat3g042720 Pisum sativum HOM05D002821 ORTHO05D003072 2.6e-10 69.3 63 66.7
QL01p022708 Quercus lobata HOM05D002821 ORTHO05D003072 2.6e-10 69.3 62 54.8
Hma1.2p1_0111F.1_g054140 Hydrangea macrophylla HOM05D002821 ORTHO05D003072 3.3e-10 68.9 61 62.3
PGR142G2897 Punica granatum HOM05D002821 ORTHO05D003072 3.3e-10 68.9 63 58.7
SHI12520 Sapria himalayana HOM05D002821 ORTHO05D003072 3.3e-10 68.9 59 61.0
Os12g0172500 Oryza sativa ssp. japonica HOM05D002821 ORTHO05D003072 7.4e-10 67.8 45 71.1
Medtr7g101110 Medicago truncatula HOM05D002821 ORTHO05D003072 9.7e-10 67.4 37 75.7
Haze_23874 Corylus avellana HOM05D002821 ORTHO05D003072 1.3e-09 67.0 68 55.9
Lalb_Chr25g0289161 Lupinus albus HOM05D002821 ORTHO05D003072 1.3e-09 67.0 64 64.1
PSO339G4483 Papaver somniferum HOM05D002821 ORTHO05D003072 1.3e-09 67.0 42 64.3
Ah.08g211840 Amaranthus hybridus HOM05D002821 ORTHO05D003072 1.7e-09 66.6 59 59.3
PSO063G0533 Papaver somniferum HOM05D002821 ORTHO05D003072 1.7e-09 66.6 45 62.2
TPR.G18263 Trifolium pratense HOM05D002821 ORTHO05D003072 1.7e-09 66.6 63 58.7
Cfa011337 Carpinus fangiana HOM05D002821 ORTHO05D003072 2.2e-09 66.2 81 50.6
vmacro14448 Vaccinium macrocarpon HOM05D002821 ORTHO05D003072 2.2e-09 66.2 56 62.5
SMO367G0343 Selaginella moellendorffii HOM05D002821 ORTHO05D003072 2.8e-09 65.9 35 77.1
Glyma.13G139100 Glycine max HOM05D002821 ORTHO05D003072 4.8e-09 65.1 65 56.9
CSS0023677 Camellia sinensis var. sinensis HOM05D002821 ORTHO05D003072 1.1e-08 63.9 65 53.8
AUR62039618 Chenopodium quinoa HOM05D002821 ORTHO05D003072 1.1e-08 63.9 60 53.3
Glyma.10G051600 Glycine max HOM05D002821 ORTHO05D003072 1.1e-08 63.9 65 55.4
HanXRQChr13g0399711 Helianthus annuus HOM05D002821 ORTHO05D003072 1.1e-08 63.9 37 73.0
Sed0017327 Sechium edule HOM05D002821 ORTHO05D003072 1.1e-08 63.9 78 47.4
AUR62039619 Chenopodium quinoa HOM05D002821 ORTHO05D003072 1.4e-08 63.5 60 53.3
Rhsim01G0218000 Rhododendron simsii HOM05D002821 ORTHO05D003072 1.8e-08 63.2 36 80.6
EL10Ac9g22497 Beta vulgaris HOM05D002821 ORTHO05D003072 2.4e-08 62.8 37 70.3
SGA_v2.0_scaffold452G51834 Striga asiatica HOM05D002821 ORTHO05D003072 2.4e-08 62.8 54 57.4
AUR62024998 Chenopodium quinoa HOM05D002821 ORTHO05D003072 9.1e-08 60.8 59 50.8
ClCG03G002230 Citrullus lanatus HOM05D002821 ORTHO05D003072 9.1e-08 60.8 81 48.1
MELO3C005053.2 Cucumis melo HOM05D002821 ORTHO05D003072 9.1e-08 60.8 81 48.1
CsaV3_1G012910 Cucumis sativus L. HOM05D002821 ORTHO05D003072 9.1e-08 60.8 81 48.1
HanXRQChr10g0291181 Helianthus annuus HOM05D002821 ORTHO05D003072 1.5e-07 60.1 41 65.9
HanXRQChr01g0018301 Helianthus annuus HOM05D002821 ORTHO05D003072 2.0e-07 59.7 41 63.4
Lsat_1_v5_gn_1_65541 Lactuca sativa HOM05D002821 ORTHO05D003072 2.0e-07 59.7 41 65.9
AUR62024996 Chenopodium quinoa HOM05D002821 ORTHO05D003072 2.6e-07 59.3 59 49.2
ECA248G2591 Erigeron canadensis HOM05D002821 ORTHO05D003072 1.7e-06 56.6 37 64.9
FvH4_3g32650 Fragaria vesca HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9
FAN11G3561 Fragaria x ananassa HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9
FAN16G0377 Fragaria x ananassa HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9
FAN21G2096 Fragaria x ananassa HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9
FAN25G3039 Fragaria x ananassa HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9
RcHm_v2.0_Chr5g0059721 Rosa chinensis HOM05D002821 ORTHO05D003072 8.5e-06 54.3 36 63.9


User provided reference genes

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