Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G886.10 Capsicum annuum HOM05D003500 ORTHO05D003919 5.6e-156 554.3 291 100.0
PGSC0003DMG400014491 Solanum tuberosum HOM05D003500 ORTHO05D003919 1.2e-129 466.8 291 84.5
Sopen08g021950 Solanum pennellii HOM05D003500 ORTHO05D003919 3.4e-129 465.3 291 84.9
Solyc08g068060.3 Solanum lycopersicum HOM05D003500 ORTHO05D003919 1.6e-126 456.4 291 82.8
Nitab4.5_0002393g0050 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.1e-126 456.1 291 83.2
Nitab4.5_0000250g0140 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.1e-110 401.4 292 76.0
Peaxi162Scf00105g00615 Petunia axillaris HOM05D003500 ORTHO05D003919 1.0e-93 347.4 289 68.2
Peaxi162Scf01026g00254 Petunia axillaris HOM05D003500 ORTHO05D003919 5.2e-85 318.5 271 69.0
Dinv14210 Davidia involucrata HOM05D003500 ORTHO05D003919 4.3e-55 219.2 305 45.2
Dinv30238 Davidia involucrata HOM05D003500 ORTHO05D003919 8.6e-48 194.9 262 47.7
Hma1.2p1_0140F.1_g063720 Hydrangea macrophylla HOM05D003500 ORTHO05D003919 2.5e-47 193.4 306 41.8
Actinidia15719 Actinidia chinensis HOM05D003500 ORTHO05D003919 5.8e-44 182.2 294 41.5
CSS0048332 Camellia sinensis var. sinensis HOM05D003500 ORTHO05D003919 1.1e-42 177.9 302 41.4
Rhsim07G0154900 Rhododendron simsii HOM05D003500 ORTHO05D003919 1.5e-39 167.5 311 38.9
TAR624G1157 Trochodendron aralioides HOM05D003500 ORTHO05D003919 5.6e-39 165.6 302 37.7
Actinidia14650 Actinidia chinensis HOM05D003500 ORTHO05D003919 1.4e-37 161.0 296 39.9
Cc08_g08590 Coffea canephora HOM05D003500 ORTHO05D003919 1.8e-37 160.6 290 41.0
Lj8A606T22 Lonicera japonica HOM05D003500 ORTHO05D003919 6.4e-35 152.1 312 38.8
CiPaw.07G208500 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.1e-33 147.1 299 36.1
QL12p026085 Quercus lobata HOM05D003500 ORTHO05D003919 4.6e-33 146.0 294 38.8
DCAR_003060 Daucus carota HOM05D003500 ORTHO05D003919 5.1e-32 142.5 298 37.9
GSVIVG01035753001 Vitis vinifera HOM05D003500 ORTHO05D003919 7.3e-31 138.7 308 34.7
Oeu014656.1 Olea europaea HOM05D003500 ORTHO05D003919 1.8e-29 134.0 181 45.9
Cfa013328 Carpinus fangiana HOM05D003500 ORTHO05D003919 2.4e-29 133.7 301 35.9
TAR636G0685 Trochodendron aralioides HOM05D003500 ORTHO05D003919 1.5e-28 131.0 274 37.6
Haze_21819 Corylus avellana HOM05D003500 ORTHO05D003919 5.8e-28 129.0 302 34.4
vmacro05351 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 1.3e-27 127.9 274 37.2
Ciclev10009124m.g Citrus clementina HOM05D003500 ORTHO05D003919 1.9e-26 124.0 295 31.9
Thecc.09G037900 Theobroma cacao HOM05D003500 ORTHO05D003919 9.3e-26 121.7 302 32.5
Atru.chr7.2303 Acer truncatum HOM05D003500 ORTHO05D003919 6.0e-25 119.0 324 33.0
Lsat_1_v5_gn_1_49081 Lactuca sativa HOM05D003500 ORTHO05D003919 7.8e-25 118.6 295 31.5
Migut.E01507 Erythranthe guttata HOM05D003500 ORTHO05D003919 1.7e-24 117.5 294 33.7
Sabra18G0036300 Salix brachista HOM05D003500 ORTHO05D003919 2.3e-24 117.1 293 33.1
Potri.018G035800 Populus trichocarpa HOM05D003500 ORTHO05D003919 6.6e-24 115.5 302 31.8
RcHm_v2.0_Chr6g0305551 Rosa chinensis HOM05D003500 ORTHO05D003919 1.5e-23 114.4 292 33.9
CANSAT35G1218 Cannabis sativa HOM05D003500 ORTHO05D003919 3.3e-23 113.2 304 32.9
Lalb_Chr03g0029341 Lupinus albus HOM05D003500 ORTHO05D003919 1.3e-22 111.3 295 35.3
HanXRQChr01g0029371 Helianthus annuus HOM05D003500 ORTHO05D003919 2.1e-22 110.5 284 30.6
Gohir.A07G024400 Gossypium hirsutum HOM05D003500 ORTHO05D003919 3.6e-22 109.8 300 33.0
ClCG08G012430 Citrullus lanatus HOM05D003500 ORTHO05D003919 4.8e-22 109.4 317 32.5
A01p05660 Brassica napus HOM05D003500 ORTHO05D003919 6.2e-22 109.0 306 30.7
AUR62024822 Chenopodium quinoa HOM05D003500 ORTHO05D003919 6.2e-22 109.0 292 32.2
MSTRG.14007 Avicennia marina HOM05D003500 ORTHO05D003919 8.1e-22 108.6 301 35.2
Gohir.D07G028000 Gossypium hirsutum HOM05D003500 ORTHO05D003919 8.1e-22 108.6 303 34.3
Eucgr.C02880 Eucalyptus grandis HOM05D003500 ORTHO05D003919 1.1e-21 108.2 299 30.4
AUR62032393 Chenopodium quinoa HOM05D003500 ORTHO05D003919 1.4e-21 107.8 292 31.8
Duzib168G0612 Durio zibethinus HOM05D003500 ORTHO05D003919 1.4e-21 107.8 306 31.0
arahy.Tifrunner.gnm1.ann1.V41S3G Arachis hypogaea HOM05D003500 ORTHO05D003919 1.8e-21 107.5 305 33.4
EL10Ac2g02525 Beta vulgaris HOM05D003500 ORTHO05D003919 1.8e-21 107.5 293 34.1
Manes.16G069800 Manihot esculenta HOM05D003500 ORTHO05D003919 4.0e-21 106.3 290 31.7
Sopen06g004460 Solanum pennellii HOM05D003500 ORTHO05D003919 5.3e-21 105.9 71 77.5
MELO3C011162.2 Cucumis melo HOM05D003500 ORTHO05D003919 6.9e-21 105.5 312 33.7
CsaV3_2G031120 Cucumis sativus L. HOM05D003500 ORTHO05D003919 6.9e-21 105.5 316 32.0
SGA_v2.0_scaffold169G38640 Striga asiatica HOM05D003500 ORTHO05D003919 6.9e-21 105.5 292 34.9
FAN20G2191 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.0e-20 104.0 290 33.4
PSO782G3147 Papaver somniferum HOM05D003500 ORTHO05D003919 2.0e-20 104.0 356 29.5
BolC1t00621H Brassica oleracea HOM05D003500 ORTHO05D003919 3.4e-20 103.2 297 30.6
Duzib187G1538 Durio zibethinus HOM05D003500 ORTHO05D003919 4.5e-20 102.8 293 30.0
Sc09g0008940 Simmondsia chinensis HOM05D003500 ORTHO05D003919 4.5e-20 102.8 294 31.6
Sp7g30440 Schrenkiella parvula HOM05D003500 ORTHO05D003919 7.6e-20 102.1 303 29.7
ECA248G2427 Erigeron canadensis HOM05D002222 ORTHO05D002354 1.3e-19 101.3 185 38.4
FvH4_2g36330 Fragaria vesca HOM05D003500 ORTHO05D003919 1.7e-19 100.9 291 33.0
FAN27G2449 Fragaria x ananassa HOM05D003500 ORTHO05D003919 2.2e-19 100.5 291 33.0
MD15G1099900 Malus domestica HOM05D003500 ORTHO05D003919 2.2e-19 100.5 305 29.8
TWI32G0121 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 6.4e-19 99.0 292 30.8
PSO063G0209 Papaver somniferum HOM05D003500 ORTHO05D003919 2.4e-18 97.1 356 28.9
Phvul.011G117800 Phaseolus vulgaris HOM05D003500 ORTHO05D003919 2.4e-18 97.1 281 29.2
vmacro18911 Vaccinium macrocarpon HOM05D003500 ORTHO05D003919 2.4e-18 97.1 312 29.8
Thhalv10025931m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 3.2e-18 96.7 316 29.4
CARHR240660 Cardamine hirsuta HOM05D003500 ORTHO05D003919 4.2e-18 96.3 287 29.3
THA.LOC104818564 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 4.2e-18 96.3 290 28.6
TPR.G31013 Trifolium pratense HOM05D003500 ORTHO05D003919 4.2e-18 96.3 290 28.6
arahy.Tifrunner.gnm1.ann1.HR3BJH Arachis hypogaea HOM05D003500 ORTHO05D003919 5.4e-18 95.9 295 32.9
PGR044G1892 Punica granatum HOM05D003500 ORTHO05D003919 5.4e-18 95.9 288 31.9
Carub.0007s0785 Capsella rubella HOM05D003500 ORTHO05D003919 7.1e-18 95.5 292 28.4
AT4G32680 Arabidopsis thaliana HOM05D003500 ORTHO05D003919 9.3e-18 95.1 293 29.7
BcaB03g12755 Brassica carinata HOM05D003500 ORTHO05D003919 9.3e-18 95.1 296 30.1
Gorai.001G029300 Gossypium raimondii HOM05D003500 ORTHO05D003919 9.3e-18 95.1 292 29.8
TPR.G21779 Trifolium pratense HOM05D003500 ORTHO05D003919 1.2e-17 94.7 285 29.1
AL7G19060 Arabidopsis lyrata HOM05D003500 ORTHO05D003919 1.6e-17 94.4 293 29.0
BraA08t33760Z Brassica rapa HOM05D003500 ORTHO05D003919 1.6e-17 94.4 307 30.0
Prupe.1G454700 Prunus persica HOM05D003500 ORTHO05D003919 2.1e-17 94.0 304 30.6
Hund25650 Selenicereus undatus HOM05D003500 ORTHO05D003919 2.7e-17 93.6 292 31.8
Ah.10g025530 Amaranthus hybridus HOM05D003500 ORTHO05D003919 6.0e-17 92.4 286 30.8
BcaC09g52062 Brassica carinata HOM05D003500 ORTHO05D003919 1.0e-16 91.7 296 28.4
BraA01t00536Z Brassica rapa HOM05D003500 ORTHO05D003919 1.8e-16 90.9 291 30.6
Dinv30507 Davidia involucrata HOM05D003500 ORTHO05D003919 2.3e-16 90.5 285 32.3
Aa31LG2G16940 Aethionema arabicum HOM05D003500 ORTHO05D003919 2.5e-15 87.0 292 28.4
C03p87180 Brassica napus HOM05D003500 ORTHO05D003919 2.5e-15 87.0 290 28.6
BolC3t21020H Brassica oleracea HOM05D003500 ORTHO05D003919 2.5e-15 87.0 290 28.6
Aqoxy7G01735 Aquilegia oxysepala HOM05D003500 ORTHO05D003919 4.3e-15 86.3 344 27.9
Ca_26668_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.3e-15 86.3 288 28.5
Psat7g063400 Pisum sativum HOM05D003500 ORTHO05D003919 9.6e-15 85.1 295 28.5
BcaC01g01007 Brassica carinata HOM05D003500 ORTHO05D003919 1.6e-14 84.3 290 26.9
Haze_16428 Corylus avellana HOM05D003500 ORTHO05D003919 2.1e-14 84.0 302 28.5
ECA233G0641 Erigeron canadensis HOM05D003500 ORTHO05D003919 2.8e-14 83.6 294 25.2
Glyma.08G206700 Glycine max HOM05D003500 ORTHO05D003919 4.8e-14 82.8 313 31.3
TWI18G0570 Tripterygium wilfordii HOM05D003500 ORTHO05D003919 4.8e-14 82.8 296 30.7
Glyma.12G113900 Glycine max HOM05D003500 ORTHO05D003919 8.1e-14 82.0 277 30.7
Medtr6g007370 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-13 81.6 286 28.0
Medtr7g446310 Medicago truncatula HOM05D003500 ORTHO05D003919 1.1e-13 81.6 286 28.0
VMungo1127G1234 Vigna mungo HOM05D003500 ORTHO05D003919 1.1e-13 81.6 277 27.4
Oeu000451.1 Olea europaea HOM05D003500 ORTHO05D003919 1.4e-13 81.3 308 30.5
Medtr4g012520 Medicago truncatula HOM05D003500 ORTHO05D003919 3.1e-13 80.1 281 30.2
Potri.003G055200 Populus trichocarpa HOM05D003500 ORTHO05D003919 5.3e-13 79.3 289 28.0
Lj3g0003659 Lotus japonicus HOM05D003500 ORTHO05D003919 6.9e-13 79.0 295 28.1
HanXRQChr17g0541731 Helianthus annuus HOM05D003500 ORTHO05D003919 1.2e-12 78.2 294 28.9
Cfa002069 Carpinus fangiana HOM05D003500 ORTHO05D003919 1.5e-12 77.8 294 28.9
VMungo0331G1412 Vigna mungo HOM05D003500 ORTHO05D003919 2.0e-12 77.4 302 29.5
Os01g0863400 Oryza sativa ssp. japonica HOM05D003500 ORTHO05D003919 3.4e-12 76.6 306 26.8
C01p06230 Brassica napus HOM05D003500 ORTHO05D003919 5.8e-12 75.9 161 32.9
AL7G19270 Arabidopsis lyrata HOM05D002156 ORTHO05D003919 1.0e-11 75.1 164 29.9
Psat7g252240 Pisum sativum HOM05D003500 ORTHO05D003919 1.3e-11 74.7 288 28.8
Glyma.07G006100 Glycine max HOM05D003500 ORTHO05D003919 2.2e-11 73.9 298 28.5
HPP92_005532 Vanilla planifolia HOM05D003500 ORTHO05D003919 2.9e-11 73.6 304 25.0
CsaV3_3G025090 Cucumis sativus L. HOM05D003500 ORTHO05D003919 3.8e-11 73.2 312 26.3
Ciclev10027012m.g Citrus clementina HOM05D003500 ORTHO05D003919 4.9e-11 72.8 291 28.5
Migut.D01030 Erythranthe guttata HOM05D003500 ORTHO05D003919 6.5e-11 72.4 294 29.6
A08p18080 Brassica napus HOM05D003500 ORTHO05D003919 1.1e-10 71.6 134 32.8
RcHm_v2.0_Chr2g0137891 Rosa chinensis HOM05D003500 ORTHO05D003919 1.1e-10 71.6 286 26.6
MD17G1194800 Malus domestica HOM05D003500 ORTHO05D003919 1.9e-10 70.9 294 27.6
HanXRQChr02g0053631 Helianthus annuus HOM05D003500 ORTHO05D003919 7.1e-10 68.9 292 27.7
BolC6t35867H Brassica oleracea HOM05D003500 ORTHO05D003919 1.2e-09 68.2 285 26.7
unitig_32.g11118 Utricularia gibba HOM05D003500 ORTHO05D003919 1.2e-09 68.2 305 29.5
C06p07810 Brassica napus HOM05D003500 ORTHO05D003919 1.6e-09 67.8 285 27.0
Thhalv10012010m.g Eutrema salsugineum HOM05D003500 ORTHO05D003919 2.7e-09 67.0 285 26.3
FvH4_6g31220 Fragaria vesca HOM05D003500 ORTHO05D003919 2.7e-09 67.0 285 25.6
MBI11_g07535_MAGBIO Magnolia biondii HOM05D003500 ORTHO05D003919 2.7e-09 67.0 130 36.9
Sed0000644 Sechium edule HOM05D003500 ORTHO05D003919 2.7e-09 67.0 137 36.5
PGR102G2146 Punica granatum HOM05D003500 ORTHO05D003919 3.5e-09 66.6 296 29.4
Lj3g0021763 Lotus japonicus HOM05D003500 ORTHO05D003919 4.6e-09 66.2 281 29.2
Rhsim08G0221500 Rhododendron simsii HOM05D003500 ORTHO05D003919 4.6e-09 66.2 215 29.8
Actinidia32755 Actinidia chinensis HOM05D003500 ORTHO05D003919 6.0e-09 65.9 282 27.3
arahy.Tifrunner.gnm1.ann1.Y86J0E Arachis hypogaea HOM05D003500 ORTHO05D003919 6.0e-09 65.9 297 27.3
A06p01860 Brassica napus HOM05D003500 ORTHO05D003919 6.0e-09 65.9 282 26.2
ClCG07G013080 Citrullus lanatus HOM05D003500 ORTHO05D003919 6.0e-09 65.9 311 25.7
Peaxi162Scf00015g10038 Petunia axillaris HOM05D003500 ORTHO05D003919 6.0e-09 65.9 158 32.9
Zm00001eb366780 Zea mays HOM05D039918 ORTHO05D003919 6.0e-09 65.9 341 26.1
BraA06t23403Z Brassica rapa HOM05D003500 ORTHO05D003919 7.9e-09 65.5 283 25.1
FAN14G5419 Fragaria x ananassa HOM05D003500 ORTHO05D003919 1.0e-08 65.1 284 25.4
Sed0003187 Sechium edule HOM05D003500 ORTHO05D003919 1.0e-08 65.1 311 26.4
Sc12g0009290 Simmondsia chinensis HOM05D003500 ORTHO05D003919 1.0e-08 65.1 309 27.2
Prupe.3G070800 Prunus persica HOM05D003500 ORTHO05D003919 1.3e-08 64.7 292 25.7
SalBow2G3431 Salvia bowleyana HOM05D003500 ORTHO05D003919 1.3e-08 64.7 288 27.4
SGA_v2.0_scaffold68G23002 Striga asiatica HOM05D003500 ORTHO05D003919 1.8e-08 64.3 293 29.0
CiPaw.01G239100 Carya illinoinensis HOM05D003500 ORTHO05D003919 2.3e-08 63.9 149 32.2
Eucgr.F03015 Eucalyptus grandis HOM05D003500 ORTHO05D003919 2.3e-08 63.9 282 25.9
Lalb_Chr04g0262681 Lupinus albus HOM05D003500 ORTHO05D003919 3.0e-08 63.5 300 29.3
Sp1g38960 Schrenkiella parvula HOM05D003500 ORTHO05D003919 3.0e-08 63.5 284 26.1
Nitab4.5_0005851g0060 Nicotiana tabacum HOM05D003500 ORTHO05D003919 6.7e-08 62.4 158 31.6
Migut.I00867 Erythranthe guttata HOM05D003500 ORTHO05D003919 8.7e-08 62.0 285 27.4
COL.COLO4_30382 Corchorus olitorius HOM05D003500 ORTHO05D003919 1.1e-07 61.6 210 27.6
ATR0051G010 Amborella trichopoda HOM05D003500 ORTHO05D003919 1.9e-07 60.8 133 33.8
Nitab4.5_0000671g0100 Nicotiana tabacum HOM05D003500 ORTHO05D003919 2.5e-07 60.5 160 31.2
arahy.Tifrunner.gnm1.ann1.AD7SDK Arachis hypogaea HOM05D003500 ORTHO05D003919 3.3e-07 60.1 293 27.6
CANSAT56G2888 Cannabis sativa HOM05D003500 ORTHO05D003919 3.3e-07 60.1 135 32.6
Mapoly0020s0159 Marchantia polymorpha HOM05D003500 ORTHO05D003919 3.3e-07 60.1 312 26.6
Sed0015651 Sechium edule HOM05D003500 ORTHO05D003919 3.3e-07 60.1 298 25.5
MSTRG.4733 Avicennia marina HOM05D003500 ORTHO05D003919 4.3e-07 59.7 296 28.7
Ca_20390_v3 Cicer arietinum L. HOM05D003500 ORTHO05D003919 4.3e-07 59.7 283 25.8
QL05p023510 Quercus lobata HOM05D003500 ORTHO05D003919 4.3e-07 59.7 227 28.6
Carub.0001s4135 Capsella rubella HOM05D003500 ORTHO05D003919 5.7e-07 59.3 295 27.1
THA.LOC104810618 Tarenaya hassleriana HOM05D003500 ORTHO05D003919 5.7e-07 59.3 286 28.0
CARHR042490 Cardamine hirsuta HOM05D003500 ORTHO05D003919 1.3e-06 58.2 288 25.0
Manes.04G123600 Manihot esculenta HOM05D003500 ORTHO05D003919 1.6e-06 57.8 238 26.5
BcaC08g43415 Brassica carinata HOM05D003500 ORTHO05D003919 2.1e-06 57.4 277 25.3
BcaB02g11002 Brassica carinata HOM05D003500 ORTHO05D003919 3.7e-06 56.6 274 25.5
Duzib235G1266 Durio zibethinus HOM05D003500 ORTHO05D003919 3.7e-06 56.6 303 24.1
Nn2g11771 Nelumbo nucifera HOM05D003500 ORTHO05D003919 3.7e-06 56.6 179 29.6
SalBow2G0526 Salvia bowleyana HOM05D003500 ORTHO05D003919 3.7e-06 56.6 284 26.1
Thecc.06G088400 Theobroma cacao HOM05D003500 ORTHO05D003919 4.8e-06 56.2 295 27.8


User provided reference genes

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