Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 2.8e-255 884.8 454 100.0
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 3.0e-241 838.2 454 94.3
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 1.4e-225 786.2 457 89.5
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 3.1e-222 775.0 454 88.5
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 7.8e-221 770.4 454 87.9
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.7e-212 742.7 442 86.0
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.1e-210 735.7 456 84.9
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.6e-205 719.5 503 78.1
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.8e-201 706.1 446 80.9
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 8.9e-201 703.7 454 79.7
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.9e-198 696.0 450 80.7
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 3.3e-195 685.3 455 77.8
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.3e-195 684.1 440 80.9
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 4.6e-189 664.8 465 76.6
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 2.3e-188 662.5 455 75.6
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 2.9e-175 619.0 452 73.0
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 8.4e-175 617.5 442 73.5
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.4e-174 616.7 452 72.8
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 3.2e-174 615.5 456 72.4
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 1.2e-173 613.6 448 71.2
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.8e-172 609.8 432 73.6
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.2e-166 588.6 434 71.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 1.8e-164 583.2 442 69.9
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 6.7e-164 581.3 415 73.0
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 2.5e-163 579.3 385 76.1
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 2.8e-162 575.9 442 69.0
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 4.8e-162 575.1 435 69.0
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 2.4e-161 572.8 423 70.7
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 2.0e-160 569.7 376 76.9
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.6e-160 569.3 394 74.4
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 4.5e-160 568.5 419 71.1
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.0e-159 567.4 381 75.6
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 6.5e-159 564.7 391 73.7
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 6.5e-159 564.7 406 72.4
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 2.5e-158 562.8 398 73.9
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 4.2e-158 562.0 444 68.0
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 9.3e-158 560.8 374 77.5
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 4.6e-157 558.5 397 72.0
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 7.9e-157 557.8 374 77.5
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 1.3e-156 557.0 378 74.6
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 2.3e-156 556.2 419 68.7
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 3.0e-156 555.8 459 65.8
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 3.9e-156 555.4 434 68.2
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 3.9e-156 555.4 382 74.9
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 5.1e-156 555.1 401 71.3
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.9e-155 553.1 415 70.1
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 1.9e-155 553.1 417 70.0
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 5.7e-155 551.6 384 74.2
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 2.2e-154 549.7 401 71.3
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.3e-154 548.1 474 63.1
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 3.1e-153 545.8 396 72.7
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 4.1e-153 545.4 381 75.3
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 5.3e-153 545.0 440 64.5
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 6.9e-153 544.7 388 71.4
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 9.0e-153 544.3 463 63.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.6e-152 542.7 401 70.3
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 3.4e-152 542.3 378 73.3
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 3.4e-152 542.3 360 76.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 5.9e-152 541.6 378 73.0
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 7.6e-152 541.2 441 66.0
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.0e-151 540.8 408 70.1
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 6.5e-151 538.1 439 67.2
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 1.9e-150 536.6 382 72.8
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 9.3e-150 534.3 422 68.0
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 2.1e-149 533.1 419 67.5
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 4.6e-149 531.9 419 67.3
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.0e-148 530.8 399 69.2
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.3e-147 525.4 407 67.8
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 7.4e-147 524.6 396 69.7
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 9.7e-147 524.2 472 59.7
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.4e-145 520.4 421 67.2
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 5.3e-145 518.5 422 66.4
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.0e-144 516.5 434 63.1
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.4e-142 510.4 433 65.1
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 4.2e-142 508.8 379 68.9
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 4.7e-141 505.4 401 66.6
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 7.9e-141 504.6 331 76.4
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.0e-140 504.2 331 76.4
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 1.8e-140 503.4 470 59.1
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 5.1e-140 501.9 372 72.3
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.7e-138 496.9 372 68.5
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 3.1e-129 466.1 405 59.8
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 1.3e-127 460.7 367 66.2
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 5.0e-127 458.8 381 63.5
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 3.6e-125 452.6 378 62.7
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 6.1e-125 451.8 376 63.3
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 4.0e-124 449.1 415 59.3
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 8.8e-124 448.0 401 58.4
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 8.5e-119 431.4 337 68.0
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.2e-118 429.5 398 59.8
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 4.0e-116 422.5 441 55.8
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 8.3e-114 414.8 377 60.7
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 1.4e-113 414.1 390 59.7
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 1.8e-113 413.7 399 59.4
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 7.0e-113 411.8 391 59.8
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 7.0e-113 411.8 391 59.8
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 1.6e-112 410.6 378 63.5
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 4.5e-112 409.1 397 58.2
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 2.3e-111 406.8 412 57.0
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.1e-102 377.9 387 56.3
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.1e-102 377.9 387 56.3
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 7.3e-102 375.2 375 56.3
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 8.0e-101 371.7 372 57.0
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 8.0e-101 371.7 372 57.0
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 9.8e-99 364.8 404 53.0
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 4.1e-89 332.8 311 58.5
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 1.1e-86 324.7 235 69.8
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.7e-82 310.8 239 69.5
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 6.0e-64 249.2 363 41.3
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 3.4e-59 233.4 159 76.7
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 3.7e-53 213.4 139 77.0
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 5.3e-52 209.5 378 36.5
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 1.2e-51 208.4 398 34.9
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.9e-49 201.1 419 37.5
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 8.2e-45 185.7 152 61.2
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 7.6e-43 179.1 124 71.8
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 6.5e-42 176.0 126 71.4
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 1.4e-41 174.9 399 34.6
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 9.3e-41 172.2 235 47.2
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.8e-39 167.9 108 75.9
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.1e-33 148.7 122 61.5
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 2.3e-31 141.0 195 45.1
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 9.4e-25 119.0 309 31.4
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 1.4e-23 115.2 126 53.2
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 2.8e-21 107.5 78 69.2
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 5.9e-19 99.8 81 65.4
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 3.8e-10 70.5 236 26.3
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 1.1e-09 68.9 48 68.8
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 4.7e-08 63.5 418 24.4
Cc02_g30210 Coffea canephora HOM05D007414 ORTHO05D009482 6.1e-08 63.2 280 26.8
Mapoly0007s0139 Marchantia polymorpha HOM05D007414 ORTHO05D009482 5.2e-07 60.1 427 23.9
Manes.11G006000 Manihot esculenta HOM05D007414 ORTHO05D009482 8.8e-07 59.3 286 24.8
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 2.0e-06 58.2 269 24.5
AagrBONN_evm.TU.Sc2ySwM_362.1466 Anthoceros agrestis HOM05D007414 ORTHO05D009482 2.0e-06 58.2 415 23.4
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 3.4e-06 57.4 57 54.4
arahy.Tifrunner.gnm1.ann1.XZAR1L Arachis hypogaea HOM05D007414 ORTHO05D009482 9.7e-06 55.8 235 25.5
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 9.7e-06 55.8 273 23.4
AUR62032647 Chenopodium quinoa HOM05D007414 ORTHO05D009482 9.7e-06 55.8 273 23.8


User provided reference genes

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