Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 2.7e-208 728.4 361 100.0
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.7e-170 602.8 389 79.4
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 6.5e-170 600.9 389 78.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 4.7e-144 515.0 389 70.4
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 5.0e-138 495.0 484 57.9
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 1.5e-126 456.8 421 60.1
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 2.0e-126 456.4 421 58.9
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 7.5e-126 454.5 421 59.9
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 1.1e-121 440.7 361 63.7
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 7.3e-121 438.0 363 62.5
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 4.7e-120 435.3 363 60.9
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 6.1e-120 434.9 392 61.7
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 8.0e-120 434.5 389 60.7
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.0e-119 434.1 361 64.3
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 1.8e-119 433.3 367 61.6
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 1.8e-119 433.3 372 62.4
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 2.3e-119 433.0 361 62.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 1.5e-118 430.3 361 60.7
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.5e-118 430.3 396 60.9
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 2.0e-118 429.9 361 61.5
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 2.0e-118 429.9 364 62.9
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 2.6e-118 429.5 361 62.9
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 5.7e-118 428.3 362 63.8
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 7.5e-118 427.9 361 62.9
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 6.4e-117 424.9 364 62.9
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 1.8e-116 423.3 391 59.3
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 3.2e-116 422.5 362 60.8
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.2e-116 422.5 362 60.8
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 5.4e-116 421.8 424 56.6
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 7.0e-116 421.4 260 76.9
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 7.0e-116 421.4 361 62.3
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.6e-115 420.2 361 62.3
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.6e-115 418.7 361 60.7
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 5.9e-115 418.3 359 62.4
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 5.9e-115 418.3 362 60.5
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 7.8e-115 417.9 268 75.7
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 1.3e-114 417.2 363 59.5
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 1.7e-114 416.8 362 61.0
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 3.0e-114 416.0 362 59.9
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 3.0e-114 416.0 367 58.9
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 3.9e-114 415.6 257 75.9
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 3.9e-114 415.6 384 59.6
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 5.0e-114 415.2 376 60.6
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 6.6e-114 414.8 362 60.5
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 6.6e-114 414.8 361 59.6
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 2.5e-113 412.9 361 62.3
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 2.5e-113 412.9 362 62.4
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 7.3e-113 411.4 362 60.8
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.2e-112 408.3 361 60.1
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 8.0e-112 407.9 365 58.9
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 1.0e-111 407.5 362 58.8
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.0e-111 407.5 367 59.7
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 1.4e-111 407.1 360 59.7
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 2.3e-111 406.4 362 58.6
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 5.2e-111 405.2 361 59.6
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 2.0e-110 403.3 256 75.0
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 3.4e-110 402.5 357 59.1
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 5.8e-110 401.7 363 59.0
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 7.5e-110 401.4 362 58.3
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 1.3e-109 400.6 359 60.2
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.9e-109 399.4 244 77.0
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 3.7e-109 399.1 361 57.1
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.7e-109 399.1 254 74.0
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 8.3e-109 397.9 362 58.0
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 8.3e-109 397.9 383 56.9
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.9e-108 396.7 362 58.8
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.9e-108 396.7 373 56.3
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 3.2e-108 396.0 362 59.1
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 7.0e-108 394.8 365 60.3
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.5e-107 392.5 361 58.7
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 7.8e-107 391.3 337 61.1
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 7.8e-107 391.3 362 59.9
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 1.0e-106 391.0 362 59.7
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 6.6e-106 388.3 361 59.0
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 1.1e-105 387.5 368 58.7
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 4.3e-105 385.6 366 57.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.2e-104 384.0 338 61.8
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 1.8e-103 380.2 377 53.8
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.8e-103 380.2 380 55.5
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 4.0e-103 379.0 362 57.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 8.9e-103 377.9 357 58.5
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 8.9e-103 377.9 387 55.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 5.8e-102 375.2 367 55.9
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 6.4e-101 371.7 335 57.3
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 1.0e-98 364.4 355 53.5
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 1.2e-96 357.5 361 52.4
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 1.2e-96 357.5 372 54.0
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 2.3e-95 353.2 363 52.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 3.1e-95 352.8 360 53.6
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 5.2e-95 352.1 362 51.1
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.6e-94 348.2 367 55.0
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 7.6e-94 348.2 366 51.4
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.3e-93 347.4 254 65.4
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 1.9e-92 343.6 328 57.6
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 4.1e-92 342.4 339 57.2
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 7.1e-92 341.7 412 50.7
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 2.7e-91 339.7 309 57.6
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 7.8e-91 338.2 361 49.6
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 1.3e-90 337.4 215 72.6
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 2.3e-90 336.7 208 74.0
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 3.9e-90 335.9 378 51.1
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 3.6e-88 329.3 257 59.5
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 1.7e-85 320.5 361 46.5
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.6e-83 313.9 262 56.1
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 8.7e-82 308.1 362 46.7
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 8.7e-82 308.1 362 46.7
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 5.6e-81 305.4 362 46.4
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 1.3e-80 304.3 361 46.5
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.8e-80 302.4 362 46.1
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 8.1e-80 301.6 361 46.3
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 1.8e-79 300.4 370 48.4
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 2.4e-79 300.1 175 81.1
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.1e-79 299.7 362 44.8
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 2.6e-78 296.6 361 44.9
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.7e-77 293.9 361 46.0
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 6.4e-69 265.4 273 54.9
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 1.8e-66 257.3 263 48.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 1.6e-64 250.8 168 69.6
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 8.1e-64 248.4 160 69.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 1.1e-60 238.0 273 49.8
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 3.3e-57 226.5 322 41.9
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 7.4e-57 225.3 378 38.1
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 7.6e-54 215.3 151 70.2
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.3e-53 214.5 154 66.9
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 7.9e-43 178.7 222 47.3
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 9.1e-39 165.2 114 69.3
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.6e-38 163.7 120 66.7
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.1e-36 158.3 309 35.6
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 4.8e-32 142.9 101 71.3
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 6.5e-29 132.5 80 72.5
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 6.7e-26 122.5 101 60.4
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 5.2e-18 96.3 57 64.9
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 6.8e-18 95.9 158 46.8
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 3.4e-17 93.6 155 45.2
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.3e-16 91.7 215 37.7
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 2.7e-14 84.0 94 54.3
vmacro14238 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 9.5e-12 75.5 44 77.3
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 2.1e-11 74.3 48 68.8
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 2.8e-11 73.9 53 69.8
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 4.7e-11 73.2 374 20.1
PRCOL_00002207 Prasinoderma coloniale HOM05D005374 ORTHO05D006534 3.4e-09 67.0 261 26.1
Gohir.D05G078100 Gossypium hirsutum HOM05D006479 ORTHO05D008310 7.0e-07 59.3 90 32.2
Gorai.009G079600 Gossypium raimondii HOM05D006479 ORTHO05D008310 7.0e-07 59.3 90 32.2
Manes.04G055500 Manihot esculenta HOM05D006479 ORTHO05D008310 3.5e-06 57.0 96 31.2
Gohir.A05G075300 Gossypium hirsutum HOM05D006479 ORTHO05D008310 4.5e-06 56.6 76 35.5
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 7.8e-06 55.8 133 27.8
QL01p020440 Quercus lobata HOM05D006479 ORTHO05D008310 7.8e-06 55.8 76 36.8


User provided reference genes

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