Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 1.7e-94 349.4 183 100.0
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 1.2e-71 273.5 187 80.7
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 2.0e-71 272.7 186 79.6
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 1.7e-62 243.0 177 75.1
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 5.0e-62 241.5 177 74.6
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 9.9e-58 227.3 185 72.4
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 7.8e-55 217.6 192 65.6
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 6.2e-52 208.0 136 78.7
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 3.1e-51 205.7 141 75.2
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 8.9e-51 204.1 187 62.6
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.4e-50 201.8 187 62.0
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 1.3e-49 200.3 138 73.2
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 2.2e-49 199.5 179 60.3
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 1.1e-48 197.2 179 59.8
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.4e-48 196.1 196 59.7
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 4.1e-48 195.3 137 70.8
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 9.2e-48 194.1 116 78.4
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 1.6e-47 193.4 135 71.9
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 2.7e-47 192.6 141 70.2
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 2.7e-47 192.6 144 68.8
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.6e-47 191.8 141 69.5
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 6.0e-47 191.4 186 59.1
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 7.8e-47 191.0 153 64.7
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 1.3e-46 190.3 134 70.9
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.7e-46 189.9 149 68.5
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 3.0e-46 189.1 172 60.5
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 3.0e-46 189.1 181 59.7
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 3.0e-46 189.1 148 69.6
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 3.9e-46 188.7 170 61.8
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 3.9e-46 188.7 136 68.4
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 3.9e-46 188.7 136 69.1
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 5.1e-46 188.3 135 71.1
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 5.1e-46 188.3 184 54.9
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 5.1e-46 188.3 190 57.9
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 6.6e-46 188.0 183 59.0
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 1.9e-45 186.4 135 68.9
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 2.5e-45 186.0 140 67.9
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 2.5e-45 186.0 181 60.2
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 2.5e-45 186.0 169 59.2
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 3.3e-45 185.7 183 57.9
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 3.3e-45 185.7 136 68.4
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 4.3e-45 185.3 149 64.4
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 5.6e-45 184.9 190 58.4
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 7.3e-45 184.5 180 58.3
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 7.3e-45 184.5 161 62.1
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.6e-44 183.3 180 58.9
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 2.1e-44 183.0 118 78.0
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 2.8e-44 182.6 158 63.9
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 3.6e-44 182.2 136 66.9
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 3.6e-44 182.2 180 57.8
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 3.6e-44 182.2 136 66.9
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 4.7e-44 181.8 181 58.0
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 1.1e-43 180.6 152 63.2
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 1.8e-43 179.9 130 66.2
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 1.8e-43 179.9 183 55.2
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 1.8e-43 179.9 139 66.9
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 3.1e-43 179.1 150 62.0
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 5.2e-43 178.3 134 68.7
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 5.2e-43 178.3 134 69.4
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 5.2e-43 178.3 134 69.4
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 6.9e-43 177.9 147 63.9
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 9.0e-43 177.6 149 64.4
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 1.2e-42 177.2 134 68.7
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 1.2e-42 177.2 134 68.7
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 2.0e-42 176.4 149 63.1
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 2.6e-42 176.0 147 63.3
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 3.4e-42 175.6 140 66.4
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 3.4e-42 175.6 140 66.4
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 4.4e-42 175.3 134 67.2
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.8e-42 174.9 112 73.2
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 7.6e-42 174.5 119 71.4
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 7.6e-42 174.5 136 63.2
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 1.3e-41 173.7 149 62.4
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.3e-41 173.7 125 69.6
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.7e-41 173.3 164 61.0
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 2.2e-41 172.9 135 66.7
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.2e-41 172.9 125 69.6
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 2.2e-41 172.9 189 51.3
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 2.9e-41 172.6 136 61.8
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 4.9e-41 171.8 192 52.6
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 6.4e-41 171.4 158 58.9
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 6.4e-41 171.4 138 64.5
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 8.4e-41 171.0 155 60.0
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 1.1e-40 170.6 131 67.9
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 2.4e-40 169.5 142 66.2
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 3.2e-40 169.1 193 54.4
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 3.2e-40 169.1 160 58.1
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 4.2e-40 168.7 126 68.3
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 5.4e-40 168.3 125 68.0
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 7.1e-40 167.9 133 60.9
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 9.3e-40 167.5 152 59.9
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 1.2e-39 167.2 152 59.9
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.2e-39 167.2 152 59.9
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 1.2e-39 167.2 160 58.8
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 1.2e-39 167.2 153 58.8
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.6e-39 166.8 152 59.9
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 2.1e-39 166.4 131 67.2
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 2.1e-39 166.4 180 53.3
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.7e-39 166.0 157 58.6
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.7e-39 166.0 157 58.6
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.0e-38 162.5 108 74.1
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 9.6e-37 157.5 138 60.1
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 3.1e-35 152.5 104 71.2
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 1.2e-34 150.6 93 80.6
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.6e-34 149.4 152 57.2
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.7e-33 146.7 112 65.2
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 1.4e-32 143.7 109 62.4
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 1.2e-31 140.6 157 53.5
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 2.7e-31 139.4 149 55.0
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 1.0e-30 137.5 121 62.0
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.9e-29 133.3 108 61.1
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 5.6e-29 131.7 111 63.1
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 1.3e-28 130.6 132 51.5
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 3.7e-28 129.0 156 51.9
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 3.7e-28 129.0 166 46.4
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 4.8e-28 128.6 167 48.5
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.2e-26 124.0 104 64.4
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 7.6e-26 121.3 188 44.1
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 6.5e-17 91.7 121 43.0
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 1.9e-16 90.1 98 46.9
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 4.3e-13 79.0 48 77.1
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 1.1e-11 74.3 66 59.1
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.3e-11 72.0 61 60.7
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 1.0e-06 57.8 82 43.9
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.8e-06 57.0 65 52.3


User provided reference genes

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