Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G874.52 Capsicum annuum HOM05D004791 ORTHO05D005637 6.0e-132 474.2 238 100.0
Solyc06g082810.3 Solanum lycopersicum HOM05D004791 ORTHO05D005637 6.5e-118 427.6 238 88.7
PGSC0003DMG400027664 Solanum tuberosum HOM05D004791 ORTHO05D005637 2.3e-115 419.1 231 90.5
Sopen06g034170 Solanum pennellii HOM05D004791 ORTHO05D005637 2.5e-114 415.6 231 90.0
Peaxi162Scf00390g00128 Petunia axillaris HOM05D004791 ORTHO05D005637 7.9e-108 394.0 250 78.4
Nitab4.5_0008751g0050 Nicotiana tabacum HOM05D004791 ORTHO05D005637 6.9e-104 380.9 250 78.4
Nitab4.5_0001348g0240 Nicotiana tabacum HOM05D004791 ORTHO05D005637 2.0e-103 379.4 250 77.2
Nitab4.5_0000105g0450 Nicotiana tabacum HOM05D004791 ORTHO05D005637 1.4e-99 366.7 268 72.8
Nitab4.5_0000539g0030 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.5e-95 351.7 246 74.0
Sopen09g012370 Solanum pennellii HOM05D004791 ORTHO05D005637 2.1e-92 342.8 247 71.3
CSS0048448 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.0e-91 340.5 254 69.3
GSVIVG01037421001 Vitis vinifera HOM05D004791 ORTHO05D005637 5.2e-91 338.2 246 69.5
CSS0048046 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.1e-90 337.0 240 71.7
vmacro02852 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.6e-90 335.9 270 64.8
Hma1.2p1_1631F.1_g294630 Hydrangea macrophylla HOM05D004791 ORTHO05D005637 3.7e-89 332.0 255 67.1
Lsat_1_v5_gn_5_176000 Lactuca sativa HOM05D004791 ORTHO05D005637 4.8e-89 331.6 250 65.2
Nitab4.5_0004383g0040 Nicotiana tabacum HOM05D004791 ORTHO05D005637 4.8e-89 331.6 185 84.9
CSS0026131 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 1.8e-88 329.7 247 66.8
CSS0033533 Camellia sinensis var. sinensis HOM05D004791 ORTHO05D005637 4.1e-88 328.6 247 66.4
RcHm_v2.0_Chr5g0050091 Rosa chinensis HOM05D004791 ORTHO05D005637 9.1e-88 327.4 238 69.3
SGA_v2.0_scaffold158G37484 Striga asiatica HOM05D004791 ORTHO05D005637 1.2e-87 327.0 241 68.0
Manes.05G196500 Manihot esculenta HOM05D004791 ORTHO05D005637 2.0e-87 326.2 259 67.2
FvH4_3g27591 Fragaria vesca HOM05D004791 ORTHO05D005637 3.5e-87 325.5 236 69.5
Hund25111 Selenicereus undatus HOM05D004791 ORTHO05D005637 3.5e-87 325.5 241 68.5
HanXRQChr01g0013701 Helianthus annuus HOM05D004791 ORTHO05D005637 5.9e-87 324.7 236 68.6
Eucgr.B03774 Eucalyptus grandis HOM05D004791 ORTHO05D005637 7.7e-87 324.3 254 64.2
Gorai.004G001600 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.0e-86 323.9 237 70.0
Gohir.A08G000072 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.2e-86 322.8 240 69.6
Gohir.D08G008400 Gossypium hirsutum HOM05D004791 ORTHO05D005637 2.9e-86 322.4 237 69.6
Potri.001G222300 Populus trichocarpa HOM05D004791 ORTHO05D005637 2.9e-86 322.4 251 66.1
SGA_v2.0_scaffold8G04482 Striga asiatica HOM05D004791 ORTHO05D005637 3.8e-86 322.0 240 66.2
Gohir.A13G230300 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-85 320.1 254 65.7
Gohir.D13G235800 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.5e-85 320.1 243 68.3
Gorai.013G266500 Gossypium raimondii HOM05D004791 ORTHO05D005637 1.9e-85 319.7 255 66.3
Dinv28770 Davidia involucrata HOM05D004791 ORTHO05D005637 2.5e-85 319.3 198 76.3
FAN16G2039 Fragaria x ananassa HOM05D004791 ORTHO05D005637 2.5e-85 319.3 235 68.9
CiPaw.13G121900 Carya illinoinensis HOM05D004791 ORTHO05D005637 3.2e-85 318.9 236 69.1
DCAR_018598 Daucus carota HOM05D004791 ORTHO05D005637 5.5e-85 318.2 253 64.4
PGR102G1910 Punica granatum HOM05D004791 ORTHO05D005637 5.5e-85 318.2 186 82.3
Atru.chr3.2946 Acer truncatum HOM05D004791 ORTHO05D005637 9.4e-85 317.4 235 67.2
MD02G1268200 Malus domestica HOM05D004791 ORTHO05D005637 1.2e-84 317.0 248 64.9
Migut.D00780 Erythranthe guttata HOM05D004791 ORTHO05D005637 2.7e-84 315.8 251 64.5
Migut.N00694 Erythranthe guttata HOM05D004791 ORTHO05D005637 3.6e-84 315.5 231 66.2
TAR633G0334 Trochodendron aralioides HOM05D004791 ORTHO05D005637 3.6e-84 315.5 288 59.0
Aqoxy2G04139 Aquilegia oxysepala HOM05D004791 ORTHO05D005637 4.7e-84 315.1 249 65.1
Cfa010279 Carpinus fangiana HOM05D004791 ORTHO05D005637 4.7e-84 315.1 255 64.3
Glyma.14G040400 Glycine max HOM05D004791 ORTHO05D005637 6.1e-84 314.7 244 66.8
SalBow6G3468 Salvia bowleyana HOM05D004791 ORTHO05D005637 8.0e-84 314.3 253 65.2
ECA248G0040 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.0e-83 313.9 231 66.2
arahy.Tifrunner.gnm1.ann1.7GTL8A Arachis hypogaea HOM05D004791 ORTHO05D005637 2.3e-83 312.8 274 62.0
LjContig00564g0026958 Lotus japonicus HOM05D004791 ORTHO05D005637 2.3e-83 312.8 247 66.4
arahy.Tifrunner.gnm1.ann1.FGXA9Q Arachis hypogaea HOM05D004791 ORTHO05D005637 3.0e-83 312.4 274 62.0
Ca_06167_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.0e-83 312.4 233 66.5
Ca_06184_v3 Cicer arietinum L. HOM05D004791 ORTHO05D005637 3.0e-83 312.4 233 66.5
Thecc.09G339600 Theobroma cacao HOM05D004791 ORTHO05D005637 6.7e-83 311.2 251 64.5
AUR62007743 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.2e-82 310.5 249 63.9
AUR62002934 Chenopodium quinoa HOM05D004791 ORTHO05D005637 1.5e-82 310.1 248 62.9
Lalb_Chr04g0249541 Lupinus albus HOM05D004791 ORTHO05D005637 1.5e-82 310.1 241 66.0
Glyma.02G275700 Glycine max HOM05D004791 ORTHO05D005637 2.6e-82 309.3 242 66.1
vmacro14664 Vaccinium macrocarpon HOM05D004791 ORTHO05D005637 2.6e-82 309.3 270 60.7
ClCG02G024120 Citrullus lanatus HOM05D004791 ORTHO05D005637 9.7e-82 307.4 254 63.8
Ciclev10016367m.g Citrus clementina HOM05D004791 ORTHO05D005637 1.7e-81 306.6 184 77.7
MD07G1051600 Malus domestica HOM05D004791 ORTHO05D005637 1.7e-81 306.6 241 63.9
PSO675G0111 Papaver somniferum HOM05D004791 ORTHO05D005637 2.8e-81 305.8 250 63.2
TWI79G1652 Tripterygium wilfordii HOM05D004791 ORTHO05D005637 2.8e-81 305.8 190 78.9
Lalb_Chr04g0249551 Lupinus albus HOM05D004791 ORTHO05D005637 3.7e-81 305.4 241 65.6
PSO732G0764 Papaver somniferum HOM05D004791 ORTHO05D005637 1.1e-80 303.9 250 63.2
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.1e-80 303.9 236 63.6
THA.LOC104800478 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 2.4e-80 302.8 201 74.1
BraA09t35872Z Brassica rapa HOM05D004791 ORTHO05D005637 5.3e-80 301.6 230 63.9
A09p02230 Brassica napus HOM05D004791 ORTHO05D005637 1.6e-79 300.1 230 63.5
VMungo0647G0403 Vigna mungo HOM05D004791 ORTHO05D005637 2.7e-79 299.3 243 64.2
Thhalv10002092m.g Eutrema salsugineum HOM05D004791 ORTHO05D005637 4.5e-79 298.5 231 62.8
Sed0001715 Sechium edule HOM05D004791 ORTHO05D005637 4.5e-79 298.5 249 61.4
Sc15g0007330 Simmondsia chinensis HOM05D004791 ORTHO05D005637 4.5e-79 298.5 247 61.5
BcaC04g24019 Brassica carinata HOM05D004791 ORTHO05D005637 1.3e-78 297.0 229 63.3
Aa31LG5G8380 Aethionema arabicum HOM05D004791 ORTHO05D005637 1.7e-78 296.6 231 64.5
CsaV3_4G023210 Cucumis sativus L. HOM05D004791 ORTHO05D005637 1.7e-78 296.6 254 61.8
Carub.0004s0745 Capsella rubella HOM05D004791 ORTHO05D005637 2.2e-78 296.2 232 62.1
AL4G20260 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 2.9e-78 295.8 228 63.6
C09p02320 Brassica napus HOM05D004791 ORTHO05D005637 6.5e-78 294.7 229 63.8
THA.LOC104816959 Tarenaya hassleriana HOM05D004791 ORTHO05D005637 6.5e-78 294.7 242 64.5
BcaB01g01998 Brassica carinata HOM05D004791 ORTHO05D005637 8.5e-78 294.3 229 63.8
Medtr5g088337 Medicago truncatula HOM05D004791 ORTHO05D005637 8.5e-78 294.3 240 62.1
MELO3C014695.2 Cucumis melo HOM05D004791 ORTHO05D005637 1.5e-77 293.5 251 62.2
Sp4g08380 Schrenkiella parvula HOM05D004791 ORTHO05D005637 2.5e-77 292.7 234 62.4
Cc01_g15680 Coffea canephora HOM05D004791 ORTHO05D005637 3.2e-77 292.4 172 80.8
BolC9t53160H Brassica oleracea HOM05D004791 ORTHO05D005637 4.2e-77 292.0 231 62.8
CDE08G0165 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 4.2e-77 292.0 248 58.1
CARHR119150 Cardamine hirsuta HOM05D004791 ORTHO05D005637 8.0e-76 287.7 232 61.2
AT2G26970 Arabidopsis thaliana HOM05D004791 ORTHO05D005637 1.4e-75 287.0 230 63.0
Lsat_1_v5_gn_9_15660 Lactuca sativa HOM05D004791 ORTHO05D005637 1.4e-75 287.0 247 59.5
Lj2A1108T30 Lonicera japonica HOM05D004791 ORTHO05D005637 8.8e-75 284.3 346 49.1
EL10Ac6g14521 Beta vulgaris HOM05D004791 ORTHO05D005637 9.8e-74 280.8 243 60.9
CDE09G0384 Ceratophyllum demersum HOM05D004791 ORTHO05D005637 1.7e-73 280.0 252 56.0
Os02g0465500 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 1.1e-72 277.3 248 57.3
Prupe.2G051000 Prunus persica HOM05D004791 ORTHO05D005637 2.7e-71 272.7 167 76.6
Zm00001eb240820 Zea mays HOM05D004791 ORTHO05D005637 2.7e-71 272.7 250 55.6
SEGI_38815 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 7.7e-71 271.2 247 55.9
ECA247G3547 Erigeron canadensis HOM05D004791 ORTHO05D005637 1.2e-66 257.3 185 65.9
Peaxi162Scf00293g00320 Petunia axillaris HOM05D004791 ORTHO05D005637 1.5e-66 256.9 146 82.2
Prupe.2G053500 Prunus persica HOM05D004791 ORTHO05D005637 1.5e-66 256.9 211 63.0
SEGI_08759 Sequoiadendron giganteum HOM05D004791 ORTHO05D005637 2.0e-66 256.5 203 60.1
Rhsim11G0123600 Rhododendron simsii HOM05D004791 ORTHO05D005637 6.3e-65 251.5 248 55.2
COL.COLO4_18343 Corchorus olitorius HOM05D004791 ORTHO05D005637 8.3e-65 251.1 244 58.6
ATR0661G342 Amborella trichopoda HOM05D004791 ORTHO05D005637 1.4e-64 250.4 231 56.3
HanXRQChr08g0230971 Helianthus annuus HOM05D004791 ORTHO05D005637 1.4e-64 250.4 186 64.5
HanXRQChr08g0230941 Helianthus annuus HOM05D004791 ORTHO05D005637 5.4e-64 248.4 186 63.4
Duzib168G2260 Durio zibethinus HOM05D004791 ORTHO05D005637 9.2e-64 247.7 167 70.7
Mapoly0089s0044 Marchantia polymorpha HOM05D004791 ORTHO05D005637 1.6e-63 246.9 232 53.0
Phvul.008G205900 Phaseolus vulgaris HOM05D004791 ORTHO05D005637 3.5e-63 245.7 202 62.4
SMO361G0388 Selaginella moellendorffii HOM05D004791 ORTHO05D005637 1.7e-62 243.4 201 63.2
Pp3c15_14440 Physcomitrium patens HOM05D004791 ORTHO05D005637 8.0e-60 234.6 196 59.2
HPP92_004836 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.5e-58 230.3 171 66.1
Pp3c9_12520 Physcomitrium patens HOM05D004791 ORTHO05D005637 5.4e-56 221.9 186 58.6
MBI06_g07515_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 3.9e-54 215.7 182 59.3
HPP92_004833 Vanilla planifolia HOM05D004791 ORTHO05D005637 1.1e-53 214.2 162 64.8
Rhsim13G0056300 Rhododendron simsii HOM05D004791 ORTHO05D005637 1.2e-52 210.7 188 60.6
Duzib170G0202 Durio zibethinus HOM05D004791 ORTHO05D005637 3.1e-51 206.1 177 61.6
CANSAT54G2396 Cannabis sativa HOM05D004791 ORTHO05D005637 3.4e-50 202.6 185 56.2
Psat2g021120 Pisum sativum HOM05D004791 ORTHO05D005637 4.4e-50 202.2 171 62.6
QL01p007413 Quercus lobata HOM05D004791 ORTHO05D005637 1.3e-49 200.7 137 71.5
Dinv00703 Davidia involucrata HOM05D004791 ORTHO05D005637 1.1e-45 187.6 165 60.6
Dinv18272 Davidia involucrata HOM05D004791 ORTHO05D005637 3.3e-45 186.0 156 62.2
PRCOL_00004118 Prasinoderma coloniale HOM05D004791 ORTHO05D005637 4.3e-45 185.7 190 49.5
Cre10.g425800 Chlamydomonas reinhardtii HOM05D004791 ORTHO05D005637 5.6e-45 185.3 205 44.9
Solyc09g018760.2 Solanum lycopersicum HOM05D004791 ORTHO05D005637 8.1e-44 181.4 139 69.1
Solyc09g018780.4 Solanum lycopersicum HOM05D004791 ORTHO05D005637 4.9e-41 172.2 101 82.2
Nn7g38012 Nelumbo nucifera HOM05D004791 ORTHO05D005637 2.4e-40 169.9 157 57.3
Lalb_Chr04g0249561 Lupinus albus HOM05D004791 ORTHO05D005637 9.2e-40 167.9 116 70.7
TPR.G27619 Trifolium pratense HOM05D004791 ORTHO05D005637 4.6e-39 165.6 146 61.0
Haze_23696 Corylus avellana HOM05D004791 ORTHO05D005637 7.3e-37 158.3 86 83.7
FAN11G2354 Fragaria x ananassa HOM05D004791 ORTHO05D005637 1.1e-35 154.5 168 54.8
MSTRG.18521 Avicennia marina HOM05D004791 ORTHO05D005637 1.9e-32 143.7 131 57.3
BolC9t53165H Brassica oleracea HOM05D004791 ORTHO05D005637 9.2e-32 141.4 132 54.5
Cfa021416 Carpinus fangiana HOM05D004791 ORTHO05D005637 1.0e-30 137.9 183 42.6
TPR.G11322 Trifolium pratense HOM05D004791 ORTHO05D005637 1.0e-30 137.9 95 66.3
Peaxi162Scf01280g00024 Petunia axillaris HOM05D004791 ORTHO05D005637 1.1e-29 134.4 124 58.9
C09p02340 Brassica napus HOM05D004791 ORTHO05D005637 2.1e-28 130.2 119 57.1
BcaC04g24021 Brassica carinata HOM05D004791 ORTHO05D005637 1.4e-27 127.5 118 55.1
C03p32150 Brassica napus HOM05D004791 ORTHO05D005637 5.4e-24 115.5 134 46.3
BolC3t15557H Brassica oleracea HOM05D004791 ORTHO05D005637 5.4e-24 115.5 134 46.3
HanXRQChr08g0230891 Helianthus annuus HOM05D004791 ORTHO05D005637 9.3e-24 114.8 185 36.2
MBI06_g07516_MAGBIO Magnolia biondii HOM05D004791 ORTHO05D005637 9.3e-24 114.8 72 73.6
HanXRQChr08g0230961 Helianthus annuus HOM05D004791 ORTHO05D005637 4.8e-20 102.4 67 65.7
HanXRQChr08g0230951 Helianthus annuus HOM05D004791 ORTHO05D005637 5.3e-19 99.0 70 67.1
DCAR_012715 Daucus carota HOM05D004791 ORTHO05D005637 7.6e-18 95.1 67 68.7
AL1G12420 Arabidopsis lyrata HOM05D004791 ORTHO05D005637 1.7e-17 94.0 65 69.2
DCAR_012716 Daucus carota HOM05D004791 ORTHO05D005637 2.3e-14 83.6 52 76.9
Os04g0303950 Oryza sativa ssp. japonica HOM05D004791 ORTHO05D005637 6.2e-12 75.5 107 46.7
Gorai.013G056800 Gossypium raimondii HOM05D004791 ORTHO05D005637 8.1e-12 75.1 84 51.2
Gohir.D04G099150 Gossypium hirsutum HOM05D004791 ORTHO05D005637 1.1e-11 74.7 84 51.2
Nitab4.5_0005144g0040 Nicotiana tabacum HOM05D004019 ORTHO05D005136 5.8e-10 68.9 39 84.6
PGSC0003DMG400043354 Solanum tuberosum HOM05D004791 ORTHO05D005637 5.5e-08 62.4 79 49.4
Cpa.g.sc34.213 Carica papaya HOM05D004791 ORTHO05D005637 6.7e-06 55.5 34 73.5


User provided reference genes

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