Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G874.4 Capsicum annuum HOM05D005604 ORTHO05D006745 0.0e+00 1084.7 542 100.0
PGSC0003DMG400020164 Solanum tuberosum HOM05D005604 ORTHO05D006745 6.5e-283 976.9 542 91.0
Sopen06g034740 Solanum pennellii HOM05D005604 ORTHO05D006745 4.7e-281 970.7 542 90.4
Solyc06g083370.3 Solanum lycopersicum HOM05D005604 ORTHO05D006745 5.7e-279 963.8 542 90.0
Nitab4.5_0009005g0020 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.4e-261 906.0 543 85.8
Nitab4.5_0003020g0080 Nicotiana tabacum HOM05D005604 ORTHO05D006745 1.2e-255 886.3 562 82.2
Sopen09g022640 Solanum pennellii HOM05D005604 ORTHO05D006745 4.1e-229 798.1 545 75.2
PGSC0003DMG400027951 Solanum tuberosum HOM05D005604 ORTHO05D006745 1.0e-227 793.5 544 75.2
Solyc09g059470.4 Solanum lycopersicum HOM05D005604 ORTHO05D006745 1.7e-227 792.7 545 75.2
Peaxi162Scf01312g00047 Petunia axillaris HOM05D005604 ORTHO05D006745 4.3e-226 788.1 462 85.7
Dinv12653 Davidia involucrata HOM05D005604 ORTHO05D006745 1.7e-219 766.1 550 71.8
Dinv19175 Davidia involucrata HOM05D005604 ORTHO05D006745 5.1e-219 764.6 549 71.9
CSS0000075 Camellia sinensis var. sinensis HOM05D005604 ORTHO05D006745 1.5e-210 736.5 552 68.5
Nitab4.5_0003317g0030 Nicotiana tabacum HOM05D005604 ORTHO05D006745 7.6e-207 724.2 685 59.3
Prupe.8G199200 Prunus persica HOM05D005604 ORTHO05D006745 3.2e-205 718.8 555 69.2
Actinidia39432 Actinidia chinensis HOM05D005604 ORTHO05D006745 6.0e-204 714.5 554 69.0
QL09p051278 Quercus lobata HOM05D005604 ORTHO05D006745 2.3e-203 712.6 545 69.5
Hma1.2p1_0226F.1_g095420 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 3.9e-203 711.8 546 69.2
Nitab4.5_0000045g0530 Nicotiana tabacum HOM05D005604 ORTHO05D006745 3.9e-203 711.8 684 58.8
CiPaw.01G050300 Carya illinoinensis HOM05D005604 ORTHO05D006745 2.5e-202 709.1 551 68.4
RcHm_v2.0_Chr6g0284121 Rosa chinensis HOM05D005604 ORTHO05D006745 5.6e-202 708.0 557 68.4
FAN24G1841 Fragaria x ananassa HOM05D005604 ORTHO05D006745 1.8e-200 703.0 557 67.7
Migut.D00766 Erythranthe guttata HOM05D005604 ORTHO05D006745 5.3e-200 701.4 543 69.2
MSTRG.18511 Avicennia marina HOM05D005604 ORTHO05D006745 2.0e-199 699.5 545 68.6
FvH4_2g18560 Fragaria vesca HOM05D005604 ORTHO05D006745 3.4e-199 698.7 557 67.3
FAN15G1583 Fragaria x ananassa HOM05D005604 ORTHO05D006745 2.2e-198 696.0 557 67.1
FAN27G1924 Fragaria x ananassa HOM05D005604 ORTHO05D006745 3.8e-198 695.3 558 67.4
Cpa.g.sc43.114 Carica papaya HOM05D005604 ORTHO05D006745 6.5e-198 694.5 546 67.9
GSVIVG01003930001 Vitis vinifera HOM05D005604 ORTHO05D006745 2.5e-197 692.6 549 67.4
Ciclev10019544m.g Citrus clementina HOM05D005604 ORTHO05D006745 5.5e-197 691.4 557 67.0
Thecc.01G220400 Theobroma cacao HOM05D005604 ORTHO05D006745 1.2e-196 690.3 556 66.5
Duzib133G0023 Durio zibethinus HOM05D005604 ORTHO05D006745 2.1e-196 689.5 555 66.8
TAR362G0631 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.1e-196 689.5 556 67.3
Duzib138G1747 Durio zibethinus HOM05D005604 ORTHO05D006745 3.5e-196 688.7 555 66.3
Gohir.D07G205700 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.0e-195 687.2 554 65.9
Actinidia30055 Actinidia chinensis HOM05D005604 ORTHO05D006745 3.9e-195 685.3 515 69.7
Gorai.001G231700 Gossypium raimondii HOM05D005604 ORTHO05D006745 5.1e-195 684.9 554 65.7
Potri.002G245700 Populus trichocarpa HOM05D005604 ORTHO05D006745 5.1e-195 684.9 551 64.6
MD10G1160100 Malus domestica HOM05D005604 ORTHO05D006745 1.9e-194 682.9 555 66.3
CiPaw.02G023400 Carya illinoinensis HOM05D005604 ORTHO05D006745 3.3e-194 682.2 547 67.1
COL.COLO4_15621 Corchorus olitorius HOM05D005604 ORTHO05D006745 1.3e-193 680.2 558 65.8
Gohir.A07G199300 Gossypium hirsutum HOM05D005604 ORTHO05D006745 1.3e-193 680.2 553 65.5
Atru.chr6.1423 Acer truncatum HOM05D005604 ORTHO05D006745 3.7e-193 678.7 559 64.8
TWI36G0921 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 8.2e-193 677.6 561 65.8
vmacro02782 Vaccinium macrocarpon HOM05D005604 ORTHO05D006745 1.4e-192 676.8 602 61.5
Rhsim13G0047500 Rhododendron simsii HOM05D005604 ORTHO05D006745 4.1e-192 675.2 556 64.7
MD05G1171800 Malus domestica HOM05D005604 ORTHO05D006745 9.0e-192 674.1 555 65.4
Peaxi162Scf00068g02416 Petunia axillaris HOM05D005604 ORTHO05D006745 3.4e-191 672.2 634 61.2
TWI18G0325 Tripterygium wilfordii HOM05D005604 ORTHO05D006745 7.6e-191 671.0 557 65.9
Eucgr.K02139 Eucalyptus grandis HOM05D005604 ORTHO05D006745 1.1e-189 667.2 550 65.5
CANSAT01G1141 Cannabis sativa HOM05D005604 ORTHO05D006745 1.4e-189 666.8 564 64.9
PSO063G0087 Papaver somniferum HOM05D005604 ORTHO05D006745 8.7e-187 657.5 555 64.3
ClCG09G008600 Citrullus lanatus HOM05D005604 ORTHO05D006745 1.3e-185 653.7 552 65.0
TAR633G2144 Trochodendron aralioides HOM05D005604 ORTHO05D006745 2.2e-185 652.9 555 64.3
PSO017G3308 Papaver somniferum HOM05D005604 ORTHO05D006745 1.1e-184 650.6 555 64.0
DCAR_004740 Daucus carota HOM05D005604 ORTHO05D006745 2.4e-184 649.4 550 63.8
Lj1A89T69 Lonicera japonica HOM05D005604 ORTHO05D006745 1.2e-183 647.1 608 61.0
CsaV3_7G026370 Cucumis sativus L. HOM05D005604 ORTHO05D006745 2.0e-183 646.4 552 64.9
HanXRQChr04g0108051 Helianthus annuus HOM05D005604 ORTHO05D006745 2.0e-183 646.4 549 63.9
Haze_15255 Corylus avellana HOM05D005604 ORTHO05D006745 4.5e-183 645.2 627 58.2
MBI07_g18990_MAGBIO Magnolia biondii HOM05D005604 ORTHO05D006745 1.0e-182 644.0 551 63.0
DCAR_012669 Daucus carota HOM05D005604 ORTHO05D006745 2.2e-182 642.9 554 64.1
MELO3C021083.2 Cucumis melo HOM05D005604 ORTHO05D006745 2.5e-181 639.4 552 64.5
VMungo1383G0872 Vigna mungo HOM05D005604 ORTHO05D006745 5.5e-181 638.3 553 63.5
AUR62001131 Chenopodium quinoa HOM05D005604 ORTHO05D006745 7.2e-181 637.9 576 62.2
AUR62016550 Chenopodium quinoa HOM05D005604 ORTHO05D006745 3.6e-180 635.6 576 62.3
arahy.Tifrunner.gnm1.ann1.S4VI32 Arachis hypogaea HOM05D005604 ORTHO05D006745 6.1e-180 634.8 546 64.3
arahy.Tifrunner.gnm1.ann1.6511ZK Arachis hypogaea HOM05D005604 ORTHO05D006745 1.0e-179 634.0 552 63.9
Cc01_g16720 Coffea canephora HOM05D005604 ORTHO05D006745 3.0e-179 632.5 546 63.0
ECA236G4946 Erigeron canadensis HOM05D005604 ORTHO05D006745 2.2e-177 626.3 518 66.0
Ah.15g093490 Amaranthus hybridus HOM05D005604 ORTHO05D006745 1.4e-176 623.6 587 59.1
Sed0019682 Sechium edule HOM05D005604 ORTHO05D006745 2.4e-176 622.9 554 62.1
Glyma.18G167400 Glycine max HOM05D005604 ORTHO05D006745 7.7e-175 617.8 552 62.3
Lj1g0022594 Lotus japonicus HOM05D005604 ORTHO05D006745 1.3e-174 617.1 537 62.9
Lsat_1_v5_gn_9_15140 Lactuca sativa HOM05D005604 ORTHO05D006745 5.0e-174 615.1 550 62.7
Lalb_Chr13g0291101 Lupinus albus HOM05D005604 ORTHO05D006745 1.4e-173 613.6 565 60.5
Medtr7g056243 Medicago truncatula HOM05D005604 ORTHO05D006745 1.6e-172 610.1 529 62.0
Psat3g148680 Pisum sativum HOM05D005604 ORTHO05D006745 3.6e-172 609.0 546 60.8
Glyma.08G349100 Glycine max HOM05D005604 ORTHO05D006745 6.1e-172 608.2 557 61.2
Phvul.008G130900 Phaseolus vulgaris HOM05D005604 ORTHO05D006745 3.0e-171 605.9 539 62.5
EL10Ac7g17895 Beta vulgaris HOM05D005604 ORTHO05D006745 5.7e-170 601.7 580 58.1
THA.LOC104822492 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 2.0e-167 593.2 572 60.1
Aa31LG5G17790 Aethionema arabicum HOM05D005604 ORTHO05D006745 1.9e-165 586.6 559 60.6
THA.LOC104802659 Tarenaya hassleriana HOM05D005604 ORTHO05D006745 1.7e-161 573.5 568 58.5
PGR044G1204 Punica granatum HOM05D005604 ORTHO05D006745 2.2e-161 573.2 566 59.0
Thhalv10020454m.g Eutrema salsugineum HOM05D005604 ORTHO05D006745 1.4e-160 570.5 562 59.6
Sabra02G0187000 Salix brachista HOM05D005604 ORTHO05D006745 1.4e-160 570.5 467 63.6
Aqoxy2G03983 Aquilegia oxysepala HOM05D005604 ORTHO05D006745 2.4e-160 569.7 563 57.5
unitig_60.g25697 Utricularia gibba HOM05D005604 ORTHO05D006745 5.9e-159 565.1 546 58.4
Carub.0003s0673 Capsella rubella HOM05D005604 ORTHO05D006745 1.0e-158 564.3 562 59.1
AT3G07210 Arabidopsis thaliana HOM05D005604 ORTHO05D006745 5.0e-158 562.0 566 58.3
HanXRQChr10g0279511 Helianthus annuus HOM05D005604 ORTHO05D006745 1.5e-157 560.5 542 58.7
Lsat_1_v5_gn_8_89380 Lactuca sativa HOM05D005604 ORTHO05D006745 1.9e-157 560.1 557 58.3
CARHR081860 Cardamine hirsuta HOM05D005604 ORTHO05D006745 3.2e-157 559.3 569 57.8
BcaC05g29746 Brassica carinata HOM05D005604 ORTHO05D006745 1.6e-156 557.0 562 58.4
AL3G18480 Arabidopsis lyrata HOM05D005604 ORTHO05D006745 6.1e-156 555.1 561 57.4
ECA247G0587 Erigeron canadensis HOM05D005604 ORTHO05D006745 6.1e-156 555.1 515 60.2
Sp3g06160 Schrenkiella parvula HOM05D005604 ORTHO05D006745 4.4e-154 548.9 565 57.5
Manes.13G049200 Manihot esculenta HOM05D005604 ORTHO05D006745 4.8e-153 545.4 452 64.4
unitig_0.g223 Utricularia gibba HOM05D005604 ORTHO05D006745 3.2e-149 532.7 547 57.4
CAN.G1432.2 Capsicum annuum HOM05D005604 ORTHO05D006745 1.6e-148 530.4 490 62.2
C05p60150 Brassica napus HOM05D005604 ORTHO05D006745 1.4e-147 527.3 566 56.9
BolC5t34666H Brassica oleracea HOM05D005604 ORTHO05D006745 1.4e-147 527.3 566 56.9
BcaC05g29850 Brassica carinata HOM05D005604 ORTHO05D006745 6.8e-147 525.0 566 56.7
A05p41000 Brassica napus HOM05D005604 ORTHO05D006745 1.7e-145 520.4 565 55.9
BraA05t22827Z Brassica rapa HOM05D005604 ORTHO05D006745 4.9e-145 518.8 565 55.8
Nn1g07990 Nelumbo nucifera HOM05D005604 ORTHO05D006745 2.8e-132 476.5 428 61.7
ATR0561G172 Amborella trichopoda HOM05D005604 ORTHO05D006745 4.7e-132 475.7 566 51.2
Hund05575 Selenicereus undatus HOM05D005604 ORTHO05D006745 3.4e-130 469.5 586 48.6
DCAR_004736 Daucus carota HOM05D005604 ORTHO05D006745 1.7e-129 467.2 419 61.6
Zm00001eb143450 Zea mays HOM05D005604 ORTHO05D006745 1.9e-125 453.8 557 50.6
CDE05G2031 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 8.9e-123 444.9 551 51.2
HPP92_011784 Vanilla planifolia HOM05D005604 ORTHO05D006745 7.5e-122 441.8 554 49.5
Sc05g0001960 Simmondsia chinensis HOM05D005604 ORTHO05D006745 5.4e-120 435.6 390 60.3
Os01g0917200 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 7.3e-117 425.2 517 50.9
Zm00001eb175070 Zea mays HOM05D005604 ORTHO05D006745 4.5e-98 362.8 547 43.9
SGA_v2.0_scaffold158G37516 Striga asiatica HOM05D005604 ORTHO05D006745 5.8e-98 362.5 406 54.4
Os08g0528800 Oryza sativa ssp. japonica HOM05D005604 ORTHO05D006745 4.0e-91 339.7 565 41.8
TPR.G6488 Trifolium pratense HOM05D005604 ORTHO05D006745 1.3e-73 281.6 300 53.0
CDE05G1628 Ceratophyllum demersum HOM05D005604 ORTHO05D006745 2.5e-72 277.3 355 47.9
SEGI_00167 Sequoiadendron giganteum HOM05D005604 ORTHO05D006745 1.1e-53 215.3 260 45.0
DCAR_026186 Daucus carota HOM05D005604 ORTHO05D006745 2.2e-52 211.1 469 36.9
ECA247G2712 Erigeron canadensis HOM05D005604 ORTHO05D006745 3.5e-34 150.6 185 51.4
Oeu057862.1 Olea europaea HOM05D005604 ORTHO05D006745 2.2e-28 131.3 79 79.7
Manes.12G047141 Manihot esculenta HOM05D005604 ORTHO05D006745 4.0e-22 110.5 83 67.5
Gohir.A05G304001 Gossypium hirsutum HOM05D005604 ORTHO05D006745 9.8e-21 105.9 112 55.4
SMO117G0236 Selaginella moellendorffii HOM05D005604 ORTHO05D006745 1.1e-19 102.4 200 30.0
AagrBONN_evm.TU.Sc2ySwM_117.906 Anthoceros agrestis HOM05D005604 ORTHO05D006745 4.1e-19 100.5 210 34.8
TPR.G6487 Trifolium pratense HOM05D005604 ORTHO05D006745 5.4e-19 100.1 84 63.1
Hma1.2p1_1324F.1_g275630 Hydrangea macrophylla HOM05D005604 ORTHO05D006745 1.7e-17 95.1 69 68.1
AagrBONN_evm.TU.Sc2ySwM_362.1199 Anthoceros agrestis HOM05D005604 ORTHO05D006745 2.3e-17 94.7 208 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1401 Anthoceros agrestis HOM05D005604 ORTHO05D006745 3.9e-17 94.0 225 30.7
Mapoly0029s0037 Marchantia polymorpha HOM05D005604 ORTHO05D006745 1.8e-14 85.1 219 32.0
QL09p051399 Quercus lobata HOM05D005604 ORTHO05D006745 1.8e-06 58.5 60 53.3


User provided reference genes

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