Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G873.3 Capsicum annuum HOM05D004620 ORTHO05D005999 7.0e-113 410.6 205 100.0
Sopen06g019380 Solanum pennellii HOM05D004620 ORTHO05D005999 2.3e-103 379.0 208 91.8
PGSC0003DMG400011816 Solanum tuberosum HOM05D004620 ORTHO05D005999 2.3e-103 379.0 208 91.3
Solyc06g054260.1 Solanum lycopersicum HOM05D004620 ORTHO05D005999 4.3e-102 374.8 209 91.4
Peaxi162Scf00642g00013 Petunia axillaris HOM05D004620 ORTHO05D005999 5.8e-99 364.4 208 89.9
Nitab4.5_0014875g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 2.9e-98 362.1 208 91.3
Nitab4.5_0000321g0050 Nicotiana tabacum HOM05D004620 ORTHO05D005999 6.4e-98 360.9 210 90.0
Peaxi162Scf00092g00145 Petunia axillaris HOM05D004620 ORTHO05D005999 1.1e-94 350.1 213 84.5
Nitab4.5_0000043g0320 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.6e-93 346.3 208 85.1
Nitab4.5_0002946g0010 Nicotiana tabacum HOM05D004620 ORTHO05D005999 1.2e-91 340.1 213 83.1
Hma1.2p1_0745F.1_g212030 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 1.7e-90 336.3 210 85.7
Duzib138G0113 Durio zibethinus HOM05D004620 ORTHO05D005999 1.1e-89 333.6 210 82.9
MSTRG.9993 Avicennia marina HOM05D004620 ORTHO05D005999 1.9e-89 332.8 210 82.4
Migut.G00327 Erythranthe guttata HOM05D004620 ORTHO05D005999 4.2e-89 331.6 213 80.3
Duzib211G0345 Durio zibethinus HOM05D004620 ORTHO05D005999 5.4e-89 331.3 206 83.0
Migut.N00177 Erythranthe guttata HOM05D004620 ORTHO05D005999 6.0e-88 327.8 210 80.5
SGA_v2.0_scaffold39G15267 Striga asiatica HOM05D004620 ORTHO05D005999 7.8e-88 327.4 214 78.5
Thecc.01G277200 Theobroma cacao HOM05D004620 ORTHO05D005999 1.0e-87 327.0 206 81.1
Eucgr.B01088 Eucalyptus grandis HOM05D004620 ORTHO05D005999 3.0e-87 325.5 215 80.9
Cc03_g03590 Coffea canephora HOM05D004620 ORTHO05D005999 5.1e-87 324.7 210 80.5
COL.COLO4_09078 Corchorus olitorius HOM05D004620 ORTHO05D005999 8.7e-87 323.9 207 80.2
VMungo0720G0388 Vigna mungo HOM05D004620 ORTHO05D005999 8.7e-87 323.9 210 79.5
MD16G1191400 Malus domestica HOM05D004620 ORTHO05D005999 1.1e-86 323.6 214 79.4
TAR365G1144 Trochodendron aralioides HOM05D004620 ORTHO05D005999 1.1e-86 323.6 211 78.2
COL.COLO4_08529 Corchorus olitorius HOM05D004620 ORTHO05D005999 1.9e-86 322.8 211 80.6
MD13G1191300 Malus domestica HOM05D004620 ORTHO05D005999 1.9e-86 322.8 214 80.4
Nn4g26289 Nelumbo nucifera HOM05D004620 ORTHO05D005999 1.9e-86 322.8 214 80.4
Phvul.007G055900 Phaseolus vulgaris HOM05D004620 ORTHO05D005999 1.9e-86 322.8 212 80.2
Nn1g02273 Nelumbo nucifera HOM05D004620 ORTHO05D005999 2.5e-86 322.4 213 78.9
CiPaw.01G164700 Carya illinoinensis HOM05D004620 ORTHO05D005999 3.3e-86 322.0 215 78.1
Gorai.004G079200 Gossypium raimondii HOM05D004620 ORTHO05D005999 3.3e-86 322.0 210 79.0
MELO3C006539.2 Cucumis melo HOM05D004620 ORTHO05D005999 5.6e-86 321.2 209 80.4
Gohir.D12G004300 Gossypium hirsutum HOM05D004620 ORTHO05D005999 7.3e-86 320.9 214 80.4
CSS0028157 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 9.6e-86 320.5 212 78.8
Glyma.20G144700 Glycine max HOM05D004620 ORTHO05D005999 9.6e-86 320.5 210 80.5
Gohir.A08G066200 Gossypium hirsutum HOM05D004620 ORTHO05D005999 9.6e-86 320.5 210 78.6
PSO761G0667 Papaver somniferum HOM05D004620 ORTHO05D005999 9.6e-86 320.5 209 79.4
Gohir.D08G074900 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 210 78.6
PSO210G3526 Papaver somniferum HOM05D004620 ORTHO05D005999 1.3e-85 320.1 209 78.9
Cfa015626 Carpinus fangiana HOM05D004620 ORTHO05D005999 1.6e-85 319.7 210 79.0
FvH4_4g15260 Fragaria vesca HOM05D004620 ORTHO05D005999 1.6e-85 319.7 212 80.7
FAN12G0806 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.6e-85 319.7 212 80.7
Lj5g0027866 Lotus japonicus HOM05D004620 ORTHO05D005999 2.8e-85 318.9 215 79.5
Lalb_Chr09g0319821 Lupinus albus HOM05D004620 ORTHO05D005999 2.8e-85 318.9 214 78.0
Aqoxy2G03369 Aquilegia oxysepala HOM05D004620 ORTHO05D005999 3.6e-85 318.5 213 77.5
Glyma.10G249000 Glycine max HOM05D004620 ORTHO05D005999 3.6e-85 318.5 212 79.2
Prupe.1G011500 Prunus persica HOM05D004620 ORTHO05D005999 6.2e-85 317.8 215 78.6
Ciclev10005892m.g Citrus clementina HOM05D004620 ORTHO05D005999 8.1e-85 317.4 208 81.2
Gorai.008G004100 Gossypium raimondii HOM05D004620 ORTHO05D005999 8.1e-85 317.4 214 79.4
Medtr5g006130 Medicago truncatula HOM05D004620 ORTHO05D005999 8.1e-85 317.4 213 78.4
FAN07G2783 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 212 78.8
FAN22G0449 Fragaria x ananassa HOM05D004620 ORTHO05D005999 1.1e-84 317.0 212 78.8
Thecc.04G229000 Theobroma cacao HOM05D004620 ORTHO05D005999 1.1e-84 317.0 211 78.7
Haze_00917 Corylus avellana HOM05D004620 ORTHO05D005999 1.8e-84 316.2 212 77.8
CsaV3_3G013420 Cucumis sativus L. HOM05D004620 ORTHO05D005999 3.1e-84 315.5 209 78.9
Lsat_1_v5_gn_3_11160 Lactuca sativa HOM05D004620 ORTHO05D005999 4.0e-84 315.1 208 81.2
RcHm_v2.0_Chr4g0416571 Rosa chinensis HOM05D004620 ORTHO05D005999 5.3e-84 314.7 212 79.2
Ciclev10022248m.g Citrus clementina HOM05D004620 ORTHO05D005999 6.9e-84 314.3 210 77.6
DCAR_030627 Daucus carota HOM05D004620 ORTHO05D005999 6.9e-84 314.3 210 78.6
GSVIVG01001159001 Vitis vinifera HOM05D004620 ORTHO05D005999 6.9e-84 314.3 209 79.9
FAN17G0373 Fragaria x ananassa HOM05D004620 ORTHO05D005999 9.0e-84 313.9 212 78.3
Duzib151G0623 Durio zibethinus HOM05D004620 ORTHO05D005999 2.0e-83 312.8 212 77.8
Lsat_1_v5_gn_6_83821 Lactuca sativa HOM05D000776 ORTHO05D001624 2.0e-83 312.8 208 79.3
Ca_24392_v3 Cicer arietinum L. HOM05D004620 ORTHO05D005999 4.5e-83 311.6 219 75.3
PGR004G0890 Punica granatum HOM05D004620 ORTHO05D005999 4.5e-83 311.6 207 78.3
Sed0012901 Sechium edule HOM05D004620 ORTHO05D005999 5.8e-83 311.2 209 77.0
TPR.G37997 Trifolium pratense HOM05D004620 ORTHO05D005999 7.6e-83 310.8 211 78.7
unitig_747.g21095 Utricularia gibba HOM05D004620 ORTHO05D005999 7.6e-83 310.8 208 78.8
HanXRQChr03g0083391 Helianthus annuus HOM05D004620 ORTHO05D005999 9.9e-83 310.5 210 78.1
Manes.02G143000 Manihot esculenta HOM05D004620 ORTHO05D005999 1.7e-82 309.7 212 77.4
Potri.008G151600 Populus trichocarpa HOM05D004620 ORTHO05D005999 1.7e-82 309.7 210 79.0
Rhsim04G0206400 Rhododendron simsii HOM05D004620 ORTHO05D005999 4.9e-82 308.1 214 78.0
QL06p003010 Quercus lobata HOM05D004620 ORTHO05D005999 6.4e-82 307.8 206 78.6
MBI01_g45395_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 8.4e-82 307.4 206 78.2
unitig_699.g19993 Utricularia gibba HOM05D004620 ORTHO05D005999 8.4e-82 307.4 209 77.0
CDE05G2563 Ceratophyllum demersum HOM05D004620 ORTHO05D005999 2.4e-81 305.8 211 77.3
HanXRQChr17g0534921 Helianthus annuus HOM05D004620 ORTHO05D005999 3.2e-81 305.4 213 76.5
Sabra08G0115400 Salix brachista HOM05D004620 ORTHO05D005999 3.2e-81 305.4 207 77.8
Manes.15G027800 Manihot esculenta HOM05D004620 ORTHO05D005999 4.2e-81 305.1 210 76.2
Potri.010G089400 Populus trichocarpa HOM05D004620 ORTHO05D005999 5.4e-81 304.7 208 77.9
TWI73G0890 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 5.4e-81 304.7 215 76.3
TWI53G0112 Tripterygium wilfordii HOM05D004620 ORTHO05D005999 7.1e-81 304.3 218 76.6
AUR62003053 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.3e-81 303.9 212 74.5
AUR62007866 Chenopodium quinoa HOM05D004620 ORTHO05D005999 9.3e-81 303.9 212 74.5
MBI04_g40949_MAGBIO Magnolia biondii HOM05D004620 ORTHO05D005999 9.3e-81 303.9 210 74.8
Psat4g210680 Pisum sativum HOM05D004620 ORTHO05D005999 1.2e-80 303.5 209 76.1
ECA246G4948 Erigeron canadensis HOM05D004620 ORTHO05D005999 1.6e-80 303.1 211 77.3
ATR0332G058 Amborella trichopoda HOM05D004620 ORTHO05D005999 4.6e-80 301.6 206 75.7
Os08g0560900 Oryza sativa ssp. japonica HOM05D004620 ORTHO05D005999 4.6e-80 301.6 208 76.4
CANSAT78G0495 Cannabis sativa HOM05D004620 ORTHO05D005999 7.9e-80 300.8 225 71.6
Dinv13981 Davidia involucrata HOM05D004620 ORTHO05D005999 7.9e-80 300.8 193 81.9
Sp1g02150 Schrenkiella parvula HOM05D004620 ORTHO05D005999 7.9e-80 300.8 206 76.7
AT1G03130 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 1.0e-79 300.4 205 77.1
Carub.0001s0227 Capsella rubella HOM05D004620 ORTHO05D005999 1.0e-79 300.4 208 76.9
THA.LOC104801241 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.0e-79 300.4 209 76.6
CDE05G3644 Ceratophyllum demersum HOM05D004620 ORTHO05D000775 2.3e-79 299.3 212 76.4
Gohir.A12G004600 Gossypium hirsutum HOM05D004620 ORTHO05D005999 3.0e-79 298.9 201 77.1
EL10Ac6g14667 Beta vulgaris HOM05D004620 ORTHO05D005999 3.9e-79 298.5 220 73.6
Sp6g02800 Schrenkiella parvula HOM05D004620 ORTHO05D005999 1.9e-78 296.2 206 76.2
Actinidia40184 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.3e-78 295.4 199 77.4
AL1G12600 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 3.3e-78 295.4 209 76.6
AT4G02770 Arabidopsis thaliana HOM05D004620 ORTHO05D005999 3.3e-78 295.4 209 76.1
CARHR002480 Cardamine hirsuta HOM05D004620 ORTHO05D005999 3.3e-78 295.4 205 76.6
Sc25g0004390 Simmondsia chinensis HOM05D004620 ORTHO05D005999 3.3e-78 295.4 206 76.2
Carub.0006s3429 Capsella rubella HOM05D004620 ORTHO05D005999 9.6e-78 293.9 205 76.6
CARHR251140 Cardamine hirsuta HOM05D004620 ORTHO05D005999 9.6e-78 293.9 206 76.2
Sed0026123 Sechium edule HOM05D004620 ORTHO05D005999 9.6e-78 293.9 204 75.5
THA.LOC104815937 Tarenaya hassleriana HOM05D004620 ORTHO05D005999 1.3e-77 293.5 208 75.5
BcaB01g02006 Brassica carinata HOM05D004620 ORTHO05D005999 1.6e-77 293.1 211 75.4
AL6G50160 Arabidopsis lyrata HOM05D004620 ORTHO05D005999 2.8e-77 292.4 207 75.8
BcaC04g24013 Brassica carinata HOM05D004620 ORTHO05D005999 2.8e-77 292.4 209 75.6
A09p02190 Brassica napus HOM05D004620 ORTHO05D005999 2.8e-77 292.4 209 75.6
BolC9t53156H Brassica oleracea HOM05D004620 ORTHO05D005999 3.6e-77 292.0 208 75.5
BraA09t35867Z Brassica rapa HOM05D004620 ORTHO05D005999 3.6e-77 292.0 208 75.5
Gorai.005G042000 Gossypium raimondii HOM05D004620 ORTHO05D005999 6.2e-77 291.2 204 78.9
Lalb_Chr05g0210951 Lupinus albus HOM05D004620 ORTHO05D005999 6.2e-77 291.2 207 74.9
Thhalv10029178m.g Eutrema salsugineum HOM05D004620 ORTHO05D005999 8.1e-77 290.8 185 80.0
Gohir.1Z049558 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-76 290.4 204 77.5
Gohir.A02G031301 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-76 290.4 204 77.5
Gohir.D02G038100 Gossypium hirsutum HOM05D004620 ORTHO05D005999 1.1e-76 290.4 204 78.4
C09p02270 Brassica napus HOM05D004620 ORTHO05D005999 1.4e-76 290.0 210 74.3
Zm00001eb212520 Zea mays HOM05D004620 ORTHO05D005999 3.4e-75 285.4 209 72.2
Aa31LG5G2470 Aethionema arabicum HOM05D004620 ORTHO05D005999 4.5e-75 285.0 212 73.6
Atru.chr5.1457 Acer truncatum HOM05D004620 ORTHO05D005999 1.0e-71 273.9 192 74.5
Actinidia08500 Actinidia chinensis HOM05D004620 ORTHO05D005999 1.3e-71 273.5 183 78.7
SEGI_38956 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.3e-71 272.7 207 70.5
CSS0012673 Camellia sinensis var. sinensis HOM05D004620 ORTHO05D005999 3.0e-71 272.3 211 71.6
SMO276G0022 Selaginella moellendorffii HOM05D004620 ORTHO05D005999 1.5e-70 270.0 147 86.4
Ah.02g126660 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.3e-70 268.9 210 71.0
Ah.02g126670 Amaranthus hybridus HOM05D004620 ORTHO05D005999 3.3e-70 268.9 210 71.0
Lj6P600T27 Lonicera japonica HOM05D004620 ORTHO05D005999 1.6e-69 266.5 204 72.1
Medtr1g104630 Medicago truncatula HOM05D004620 ORTHO05D005999 1.1e-68 263.8 210 68.1
AagrBONN_evm.TU.Sc2ySwM_344.3381 Anthoceros agrestis HOM05D004620 ORTHO05D005999 4.0e-68 261.9 191 71.2
CBR_g29404 Chara braunii HOM05D004620 ORTHO05D005999 4.0e-68 261.9 147 85.0
AagrBONN_evm.TU.Sc2ySwM_344.3373 Anthoceros agrestis HOM05D004620 ORTHO05D005999 1.0e-66 257.3 190 70.0
SEGI_24049 Sequoiadendron giganteum HOM05D004620 ORTHO05D005999 2.2e-66 256.1 196 70.4
Pp3c3_5620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.8e-66 255.4 156 80.1
Pp3c6_1620 Physcomitrium patens HOM05D004620 ORTHO05D005999 3.8e-66 255.4 211 65.4
Dinv44516 Davidia involucrata HOM05D004620 ORTHO05D005999 4.9e-66 255.0 214 67.3
Pp3c16_23780 Physcomitrium patens HOM05D004620 ORTHO05D005999 8.4e-66 254.2 206 66.0
Pp3c13_2310 Physcomitrium patens HOM05D004620 ORTHO05D005999 4.2e-65 251.9 218 62.8
Mapoly0141s0027 Marchantia polymorpha HOM05D004620 ORTHO05D005999 1.6e-64 250.0 156 78.2
HPP92_018490 Vanilla planifolia HOM05D004620 ORTHO05D005999 3.3e-62 242.3 173 72.3
MCO13G106 Micromonas commoda HOM05D004620 ORTHO05D005999 2.6e-59 232.6 191 64.4
PRCOL_00005075 Prasinoderma coloniale HOM05D004620 ORTHO05D005999 1.3e-58 230.3 144 77.8
Actinidia23481 Actinidia chinensis HOM05D004620 ORTHO05D005999 3.9e-55 218.8 211 61.6
Cre05.g238332 Chlamydomonas reinhardtii HOM05D004620 ORTHO05D005999 8.7e-55 217.6 151 70.2
Eucgr.H03534 Eucalyptus grandis HOM05D004620 ORTHO05D005999 2.0e-51 206.5 213 61.0
GSVIVG01017944001 Vitis vinifera HOM05D004620 ORTHO05D005999 3.1e-44 182.6 207 55.1
Hma1.2p1_1898F.1_g306910 Hydrangea macrophylla HOM05D004620 ORTHO05D005999 7.7e-43 177.9 92 92.4
TAR633G1350 Trochodendron aralioides HOM05D004620 ORTHO05D005999 3.6e-32 142.5 75 90.7
Lsat_1_v5_gn_2_36061 Lactuca sativa HOM05D004620 ORTHO05D232623 1.4e-20 104.0 104 60.6
Lsat_1_v5_gn_1_32540 Lactuca sativa HOM05D004620 ORTHO05D232094 3.5e-19 99.4 104 59.6
Lsat_1_v5_gn_7_40400 Lactuca sativa HOM05D004620 ORTHO05D229089 3.5e-19 99.4 104 59.6
CAN.G907.14 Capsicum annuum HOM05D004620 ORTHO05D115364 1.5e-14 84.0 95 55.8


User provided reference genes

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