Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 4.3e-245 850.9 429 100.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 6.8e-227 790.4 431 92.6
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.3e-225 786.2 431 92.1
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 2.2e-225 785.4 431 92.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.1e-223 778.9 434 90.8
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 2.8e-204 715.3 434 85.3
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 1.6e-188 662.9 416 78.1
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 3.7e-188 661.8 404 79.2
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 7.7e-186 654.1 416 78.6
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.7e-185 652.9 409 78.7
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 2.2e-185 652.5 429 76.2
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 6.5e-185 651.0 405 77.3
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.4e-184 649.8 400 78.8
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 5.5e-184 647.9 425 79.1
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 9.4e-184 647.1 408 76.7
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 3.0e-182 642.1 432 72.9
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 1.5e-181 639.8 403 76.7
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 4.3e-181 638.3 402 77.4
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 4.3e-181 638.3 400 76.5
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 4.3e-181 638.3 428 73.8
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.7e-180 636.3 398 76.9
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 3.7e-180 635.2 419 75.2
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 4.8e-180 634.8 404 76.0
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 1.4e-179 633.3 399 77.2
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 2.4e-179 632.5 419 74.9
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 4.1e-179 631.7 389 77.6
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.5e-178 628.2 430 71.4
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 7.7e-178 627.5 408 75.5
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.3e-177 626.7 389 77.9
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 1.3e-177 626.7 408 75.2
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 1.3e-177 626.7 399 77.2
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.7e-177 626.3 393 77.6
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.7e-177 626.3 424 72.6
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.2e-177 625.9 415 74.7
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 2.9e-177 625.5 398 75.6
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 2.9e-177 625.5 417 73.4
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 3.8e-177 625.2 428 71.5
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 6.5e-177 624.4 389 77.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 6.5e-177 624.4 397 75.3
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 8.5e-177 624.0 418 73.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-176 623.6 420 72.1
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.1e-176 623.6 430 71.2
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.4e-176 623.2 429 71.1
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 1.9e-176 622.9 427 71.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 2.5e-176 622.5 446 71.1
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.5e-176 622.5 399 75.9
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 3.2e-176 622.1 394 75.1
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 4.2e-176 621.7 426 72.5
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 4.2e-176 621.7 424 73.6
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 5.5e-176 621.3 393 75.8
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 2.1e-175 619.4 395 77.5
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 3.6e-175 618.6 403 74.4
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 4.7e-175 618.2 388 76.5
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 6.1e-175 617.8 426 72.3
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.0e-174 617.1 403 74.2
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 1.4e-174 616.7 425 72.2
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 1.4e-174 616.7 427 71.2
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 1.5e-173 613.2 398 74.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 5.7e-173 611.3 403 73.2
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 3.1e-171 605.5 389 74.3
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 5.3e-171 604.7 454 68.7
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 9.1e-171 604.0 463 66.5
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 9.1e-171 604.0 398 72.9
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 7.7e-170 600.9 398 73.1
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 2.9e-169 599.0 419 70.4
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 5.0e-169 598.2 398 72.4
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 6.5e-169 597.8 417 70.7
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 8.5e-169 597.4 398 72.9
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 1.9e-168 596.3 398 72.1
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.9e-168 596.3 417 69.5
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 2.5e-168 595.9 406 71.9
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 9.4e-168 594.0 419 70.2
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 6.1e-167 591.3 443 67.9
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.0e-166 590.5 384 76.0
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 3.3e-165 585.5 389 73.8
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 7.4e-165 584.3 398 71.9
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 9.7e-165 583.9 398 71.9
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 7.0e-163 577.8 398 71.1
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 7.0e-163 577.8 398 71.1
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.2e-160 568.9 412 67.2
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 2.1e-159 566.2 400 71.0
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.3e-158 562.8 551 56.6
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 3.3e-157 558.9 395 68.9
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 5.7e-157 558.1 354 77.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 7.5e-157 557.8 387 71.1
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 3.7e-156 555.4 387 71.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 6.3e-156 554.7 412 66.5
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 1.8e-155 553.1 442 64.7
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 5.3e-155 551.6 390 68.5
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 7.0e-155 551.2 399 66.4
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 2.9e-153 545.8 354 75.4
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 2.5e-152 542.7 390 69.7
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.2e-149 533.9 331 77.9
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 7.7e-146 521.2 383 69.2
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.2e-143 513.8 392 64.3
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 2.8e-143 512.7 421 58.7
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 4.0e-142 508.8 377 67.4
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 5.7e-141 505.0 377 63.7
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.0e-138 496.5 338 69.8
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 2.3e-137 493.0 344 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 6.6e-137 491.5 387 60.5
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 1.6e-135 486.9 334 72.5
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 2.9e-132 476.1 334 70.7
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 3.3e-128 462.6 399 61.7
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.5e-120 437.2 325 69.2
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 3.1e-118 429.5 329 67.8
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.7e-113 413.7 370 54.3
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 9.9e-109 397.9 295 69.2
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 2.9e-108 396.4 264 72.3
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 5.1e-105 385.6 277 69.3
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 4.4e-101 372.5 410 48.3
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.3e-100 370.9 319 59.2
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 9.3e-99 364.8 316 61.7
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 6.2e-95 352.1 227 74.4
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 4.9e-92 342.4 403 45.2
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 1.3e-89 334.3 398 44.7
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 1.8e-65 254.2 264 50.4
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.3e-64 250.0 168 67.3
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-59 235.0 229 57.2
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.1e-54 218.4 168 63.1
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 3.1e-54 216.9 128 79.7
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 3.5e-53 213.4 187 58.3
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 3.9e-49 199.9 338 33.7
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 1.7e-47 194.5 120 76.7
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 7.0e-46 189.1 167 57.5
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.1e-34 151.0 142 54.9
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 2.0e-29 134.4 418 28.7
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 2.8e-26 124.0 108 58.3
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 1.0e-25 122.1 85 69.4
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 1.8e-25 121.3 97 69.1
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.1e-22 112.1 94 61.7
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 4.7e-18 96.7 64 64.1
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 6.0e-13 79.7 70 57.1
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 1.3e-12 78.6 97 45.4
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 3.3e-11 73.9 49 69.4
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 4.3e-11 73.6 62 58.1
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 3.4e-08 63.9 56 53.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 2.2e-07 61.2 56 57.1
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 2.9e-07 60.8 45 55.6


User provided reference genes

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