Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G869.8 Capsicum annuum HOM05D005131 ORTHO05D006645 3.3e-172 608.2 293 100.0
Sopen06g002230 Solanum pennellii HOM05D005131 ORTHO05D006645 1.1e-151 540.0 273 94.9
Solyc06g007310.4 Solanum lycopersicum HOM05D005131 ORTHO05D006645 5.5e-151 537.7 273 94.5
PGSC0003DMG401020557 Solanum tuberosum HOM05D005131 ORTHO05D006645 5.5e-151 537.7 273 94.5
Actinidia37756 Actinidia chinensis HOM05D005131 ORTHO05D006645 6.9e-138 494.2 268 86.6
CSS0022283 Camellia sinensis var. sinensis HOM05D005131 ORTHO05D006645 2.5e-135 485.7 265 86.4
vmacro07486 Vaccinium macrocarpon HOM05D005131 ORTHO05D006645 7.2e-135 484.2 268 84.3
Nn2g14347 Nelumbo nucifera HOM05D005131 ORTHO05D006645 4.6e-134 481.5 265 86.0
GSVIVG01022599001 Vitis vinifera HOM05D005131 ORTHO05D006645 7.9e-134 480.7 265 84.9
CAN.G741.26 Capsicum annuum HOM05D005131 ORTHO05D006645 1.0e-133 480.3 278 86.0
Nitab4.5_0012238g0010 Nicotiana tabacum HOM05D005131 ORTHO05D006645 1.4e-133 479.9 278 85.6
CiPaw.10G018800 Carya illinoinensis HOM05D005131 ORTHO05D006645 2.3e-133 479.2 271 82.7
QL07p027488 Quercus lobata HOM05D005131 ORTHO05D006645 3.9e-133 478.4 271 82.3
Haze_20155 Corylus avellana HOM05D005131 ORTHO05D006645 8.8e-133 477.2 269 83.6
PSO384G4687 Papaver somniferum HOM05D005131 ORTHO05D006645 1.1e-132 476.9 266 83.5
Ah.12g059320 Amaranthus hybridus HOM05D005131 ORTHO05D006645 2.5e-132 475.7 265 84.9
Cpa.g.sc104.11 Carica papaya HOM05D005131 ORTHO05D006645 3.3e-132 475.3 265 84.5
PSO339G6419 Papaver somniferum HOM05D005131 ORTHO05D006645 4.3e-132 474.9 266 83.5
Cc06_g06690 Coffea canephora HOM05D005131 ORTHO05D006645 5.7e-132 474.6 265 84.2
Glyma.19G200600 Glycine max HOM05D005131 ORTHO05D006645 1.7e-131 473.0 268 81.3
MSTRG.5889 Avicennia marina HOM05D005131 ORTHO05D006645 2.2e-131 472.6 271 81.5
EL10Ac5g11853 Beta vulgaris HOM05D005131 ORTHO05D006645 2.8e-131 472.2 270 84.1
Lalb_Chr20g0111311 Lupinus albus HOM05D005131 ORTHO05D006645 3.7e-131 471.9 265 81.9
TPR.G31287 Trifolium pratense HOM05D005131 ORTHO05D006645 3.7e-131 471.9 265 81.9
Duzib128G0735 Durio zibethinus HOM05D005131 ORTHO05D006645 6.3e-131 471.1 265 83.4
Migut.J00690 Erythranthe guttata HOM05D005131 ORTHO05D006645 1.4e-130 469.9 271 81.9
Manes.09G044500 Manihot esculenta HOM05D005131 ORTHO05D006645 1.4e-130 469.9 264 82.6
Atru.chr8.1330 Acer truncatum HOM05D005131 ORTHO05D006645 2.4e-130 469.2 265 83.4
Aqoxy2G00625 Aquilegia oxysepala HOM05D005131 ORTHO05D006645 3.1e-130 468.8 265 83.8
Medtr7g106430 Medicago truncatula HOM05D005131 ORTHO05D006645 3.1e-130 468.8 265 80.8
Lj1g0022682 Lotus japonicus HOM05D005131 ORTHO05D006645 5.3e-130 468.0 265 81.5
HanXRQChr13g0398521 Helianthus annuus HOM05D005131 ORTHO05D006645 9.1e-130 467.2 265 81.5
Manes.08G034500 Manihot esculenta HOM05D005131 ORTHO05D006645 9.1e-130 467.2 265 80.4
Potri.016G068400 Populus trichocarpa HOM05D005131 ORTHO05D006645 9.1e-130 467.2 265 81.1
Sc22g0002890 Simmondsia chinensis HOM05D005131 ORTHO05D006645 9.1e-130 467.2 281 80.4
TWI74G0987 Tripterygium wilfordii HOM05D005131 ORTHO05D006645 1.5e-129 466.5 265 81.1
Ciclev10012219m.g Citrus clementina HOM05D005131 ORTHO05D006645 3.4e-129 465.3 265 82.3
BcaB02g08573 Brassica carinata HOM05D005131 ORTHO05D006645 4.5e-129 464.9 265 82.3
Aa31LG10G7440 Aethionema arabicum HOM05D005131 ORTHO05D006645 5.9e-129 464.5 270 79.6
BcaC02g09261 Brassica carinata HOM05D005131 ORTHO05D006645 5.9e-129 464.5 265 82.3
Nitab4.5_0000121g0080 Nicotiana tabacum HOM05D005131 ORTHO05D006645 5.9e-129 464.5 306 79.1
CARHR162160 Cardamine hirsuta HOM05D005131 ORTHO05D006645 7.7e-129 464.2 265 82.6
Phvul.001G196500 Phaseolus vulgaris HOM05D005131 ORTHO05D006645 1.0e-128 463.8 271 78.6
VMungo1383G1979 Vigna mungo HOM05D005131 ORTHO05D006645 1.0e-128 463.8 265 80.0
Haze_20150 Corylus avellana HOM05D005131 ORTHO05D006645 1.7e-128 463.0 271 80.8
AUR62030719 Chenopodium quinoa HOM05D005131 ORTHO05D006645 2.2e-128 462.6 271 84.1
CsaV3_3G038080 Cucumis sativus L. HOM05D005131 ORTHO05D006645 5.0e-128 461.5 265 81.1
RcHm_v2.0_Chr3g0476361 Rosa chinensis HOM05D005131 ORTHO05D006645 5.0e-128 461.5 265 80.4
Sed0026420 Sechium edule HOM05D005131 ORTHO05D006645 5.0e-128 461.5 265 80.4
FAN05G1272 Fragaria x ananassa HOM05D005131 ORTHO05D006645 6.5e-128 461.1 265 80.8
Ca_09063_v3 Cicer arietinum L. HOM05D005131 ORTHO05D006645 1.1e-127 460.3 265 79.6
DCAR_009180 Daucus carota HOM05D005131 ORTHO05D006645 1.1e-127 460.3 273 79.1
Thhalv10010578m.g Eutrema salsugineum HOM05D005131 ORTHO05D006645 1.1e-127 460.3 265 81.9
Prupe.7G093300 Prunus persica HOM05D005131 ORTHO05D006645 1.1e-127 460.3 265 82.3
Gohir.D09G129600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.9e-127 459.5 265 81.5
Gorai.006G148500 Gossypium raimondii HOM05D005131 ORTHO05D006645 1.9e-127 459.5 265 81.5
AT3G52390 Arabidopsis thaliana HOM05D005131 ORTHO05D006645 3.2e-127 458.8 265 81.5
BraA04t16401Z Brassica rapa HOM05D005131 ORTHO05D006645 3.2e-127 458.8 273 79.9
FAN05G3424 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.2e-127 458.8 265 80.4
Peaxi162Scf00012g02523 Petunia axillaris HOM05D005131 ORTHO05D006645 3.2e-127 458.8 242 90.9
MD12G1041900 Malus domestica HOM05D005131 ORTHO05D006645 4.2e-127 458.4 266 82.0
AL5G33050 Arabidopsis lyrata HOM05D005131 ORTHO05D006645 5.5e-127 458.0 265 81.1
Dinv12349 Davidia involucrata HOM05D005131 ORTHO05D006645 5.5e-127 458.0 246 85.8
ECA233G5535 Erigeron canadensis HOM05D005131 ORTHO05D006645 5.5e-127 458.0 265 80.0
FvH4_6g20480 Fragaria vesca HOM05D005131 ORTHO05D006645 5.5e-127 458.0 265 79.6
Sp5g09900 Schrenkiella parvula HOM05D005131 ORTHO05D006645 7.2e-127 457.6 265 80.8
C04p40630 Brassica napus HOM05D005131 ORTHO05D006645 9.4e-127 457.2 273 79.9
BolC4t25644H Brassica oleracea HOM05D005131 ORTHO05D006645 9.4e-127 457.2 273 79.9
ClCG10G018240 Citrullus lanatus HOM05D005131 ORTHO05D006645 9.4e-127 457.2 265 80.8
Lsat_1_v5_gn_6_33480 Lactuca sativa HOM05D005131 ORTHO05D006645 9.4e-127 457.2 271 77.9
PGR004G1515 Punica granatum HOM05D005131 ORTHO05D006645 9.4e-127 457.2 266 79.7
A04p07040 Brassica napus HOM05D005131 ORTHO05D006645 1.2e-126 456.8 273 79.5
Gohir.A09G133400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.6e-126 456.4 265 80.4
Carub.0005s1875 Capsella rubella HOM05D005131 ORTHO05D006645 3.6e-126 455.3 265 80.4
Eucgr.A02573 Eucalyptus grandis HOM05D005131 ORTHO05D006645 4.7e-126 454.9 265 81.1
Hund10854 Selenicereus undatus HOM05D005131 ORTHO05D006645 6.1e-126 454.5 272 79.0
Thecc.05G106400 Theobroma cacao HOM05D005131 ORTHO05D006645 3.0e-125 452.2 271 80.1
CANSAT64G0057 Cannabis sativa HOM05D005131 ORTHO05D006645 3.9e-125 451.8 268 78.7
Rhsim03G0063800 Rhododendron simsii HOM05D005131 ORTHO05D006645 1.5e-124 449.9 275 78.9
Hund14967 Selenicereus undatus HOM05D005131 ORTHO05D006645 7.4e-124 447.6 271 79.0
THA.LOC104803758 Tarenaya hassleriana HOM05D005131 ORTHO05D006645 6.3e-123 444.5 265 78.9
Os07g0158200 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 1.3e-120 436.8 268 76.5
SGA_v2.0_scaffold13G06653 Striga asiatica HOM05D004363 ORTHO05D005110 1.3e-120 436.8 250 81.6
Zm00001eb117460 Zea mays HOM05D005131 ORTHO05D006645 2.1e-118 429.5 268 75.4
COL.COLO4_29542 Corchorus olitorius HOM05D005131 ORTHO05D006645 6.1e-118 427.9 322 66.5
TAR636G0548 Trochodendron aralioides HOM05D005131 ORTHO05D006645 4.8e-115 418.3 236 83.5
arahy.Tifrunner.gnm1.ann1.275XDC Arachis hypogaea HOM05D005131 ORTHO05D006645 9.1e-114 414.1 237 79.7
SEGI_21507 Sequoiadendron giganteum HOM05D005131 ORTHO05D006645 1.2e-113 413.7 265 70.2
ATR0697G267 Amborella trichopoda HOM05D005131 ORTHO05D006645 3.5e-113 412.1 249 76.3
FAN14G5766 Fragaria x ananassa HOM05D005131 ORTHO05D006645 5.0e-112 408.3 270 73.0
Hma1.2p1_0079F.1_g041720 Hydrangea macrophylla HOM05D005131 ORTHO05D006645 4.2e-111 405.2 239 81.6
SHI18412 Sapria himalayana HOM05D005131 ORTHO05D006645 1.6e-110 403.3 265 69.1
arahy.Tifrunner.gnm1.ann1.X3LXDK Arachis hypogaea HOM05D005131 ORTHO05D006645 1.0e-109 400.6 260 72.7
Oeu035639.1 Olea europaea HOM05D005131 ORTHO05D006645 2.3e-109 399.4 222 85.1
Gohir.A09G012800 Gossypium hirsutum HOM05D005131 ORTHO05D006645 3.3e-108 395.6 221 82.4
AUR62036353 Chenopodium quinoa HOM05D005131 ORTHO05D006645 4.4e-108 395.2 232 82.8
Gohir.A05G372400 Gossypium hirsutum HOM05D005131 ORTHO05D006645 2.2e-107 392.9 221 82.4
MSTRG.18896 Avicennia marina HOM05D005131 ORTHO05D006645 4.8e-107 391.7 220 82.3
Gohir.A13G054600 Gossypium hirsutum HOM05D005131 ORTHO05D006645 1.4e-106 390.2 221 81.9
FAN02G0570 Fragaria x ananassa HOM05D005131 ORTHO05D006645 3.1e-106 389.0 222 81.1
Mapoly0052s0020 Marchantia polymorpha HOM05D005131 ORTHO05D006645 7.0e-106 387.9 265 66.4
AagrBONN_evm.TU.Sc2ySwM_117.2339 Anthoceros agrestis HOM05D005131 ORTHO05D006645 1.0e-104 384.0 260 68.5
SMO334G0001 Selaginella moellendorffii HOM05D005131 ORTHO05D006645 1.7e-99 366.7 250 66.8
unitig_26.g9145 Utricularia gibba HOM05D005131 ORTHO05D006645 1.6e-97 360.1 226 76.5
MBI12_g38626_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.3e-96 357.1 210 78.6
CBR_g41666 Chara braunii HOM05D005131 ORTHO05D006645 8.6e-88 327.8 223 65.5
Pp3c11_16390 Physcomitrium patens HOM05D005131 ORTHO05D006645 1.5e-87 327.0 265 58.5
HPP92_012180 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.7e-80 303.5 209 66.5
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.1e-77 292.7 261 55.2
HPP92_013927 Vanilla planifolia HOM05D005131 ORTHO05D006645 4.0e-77 292.4 186 73.1
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 5.6e-71 271.9 282 49.3
HPP92_026830 Vanilla planifolia HOM05D005131 ORTHO05D006645 5.2e-69 265.4 165 74.5
PRCOL_00003277 Prasinoderma coloniale HOM05D005131 ORTHO05D006645 4.6e-65 252.3 255 46.7
MELO3C031004.2 Cucumis melo HOM05D005131 ORTHO05D006645 3.0e-64 249.6 144 79.9
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 8.6e-64 248.1 254 52.4
Zm00001eb419840 Zea mays HOM05D005131 ORTHO05D006645 7.6e-60 235.0 187 62.0
Lj7A140G6 Lonicera japonica HOM05D005131 ORTHO05D006645 1.0e-56 224.6 182 63.2
MELO3C009548.2 Cucumis melo HOM05D000492 ORTHO05D000499 2.5e-55 219.9 122 82.8
Zm00001eb002330 Zea mays HOM05D005131 ORTHO05D006645 2.2e-51 206.8 135 71.9
Sabra16G0069400 Salix brachista HOM05D005131 ORTHO05D006645 2.4e-50 203.4 116 78.4
Psat3g205680 Pisum sativum HOM05D005131 ORTHO05D006645 5.4e-50 202.2 113 80.5
CDE09G0133 Ceratophyllum demersum HOM05D005131 ORTHO05D006645 1.7e-48 197.2 124 79.0
Cc08_g12120 Coffea canephora HOM05D005131 ORTHO05D003188 1.9e-42 177.2 122 71.3
Zm00001eb083350 Zea mays HOM05D005131 ORTHO05D006645 4.3e-39 166.0 118 67.8
HPP92_013928 Vanilla planifolia HOM05D005131 ORTHO05D006645 8.1e-38 161.8 85 87.1
arahy.Tifrunner.gnm1.ann1.Y0MH84 Arachis hypogaea HOM05D005131 ORTHO05D006645 1.8e-37 160.6 172 51.2
Zm00001eb324820 Zea mays HOM05D005131 ORTHO05D006645 1.5e-36 157.5 107 70.1
Cc04_g12370 Coffea canephora HOM05D005131 ORTHO05D006645 7.4e-31 138.7 76 85.5
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.7e-27 127.5 277 34.7
Psat0s6170g0080 Pisum sativum HOM05D005131 ORTHO05D006645 7.9e-25 118.6 67 82.1
MBI12_g38628_MAGBIO Magnolia biondii HOM05D005131 ORTHO05D006645 1.9e-23 114.0 62 87.1
Zm00001eb429030 Zea mays HOM05D005131 ORTHO05D006645 1.1e-18 98.2 69 66.7
Zm00001eb324830 Zea mays HOM05D005131 ORTHO05D006645 3.2e-18 96.7 69 66.7
Os08g0165800 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 2.3e-16 90.5 282 29.4
MCO10G056 Micromonas commoda HOM05D005131 ORTHO05D006645 4.1e-13 79.7 165 29.7
MD14G1041100 Malus domestica HOM05D005131 ORTHO05D006645 9.1e-13 78.6 48 75.0
A01p30550 Brassica napus HOM05D005131 ORTHO05D033215 4.5e-12 76.3 40 82.5
BraA01t03187Z Brassica rapa HOM05D005131 ORTHO05D033215 4.5e-12 76.3 40 82.5
Zm00001eb392810 Zea mays HOM05D005131 ORTHO05D006645 7.7e-12 75.5 55 63.6
BolC1t02473H Brassica oleracea HOM05D005131 ORTHO05D033215 1.3e-11 74.7 40 80.0
CAN.G1767.1 Capsicum annuum HOM05D000162 ORTHO05D000090 8.5e-11 72.0 81 51.9
HPP92_012178 Vanilla planifolia HOM05D005131 ORTHO05D006645 1.1e-10 71.6 61 60.7
TAR633G0521 Trochodendron aralioides HOM05D005131 ORTHO05D006645 3.2e-10 70.1 49 63.3
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 4.2e-10 69.7 212 30.7
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 9.4e-10 68.6 268 25.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 1.6e-09 67.8 281 25.3
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 4.7e-09 66.2 234 27.8
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.3e-08 63.9 237 28.7
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.0e-08 63.5 292 23.6
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.9e-08 63.2 208 26.0
Os07g0157900 Oryza sativa ssp. japonica HOM05D005131 ORTHO05D006645 3.9e-08 63.2 39 74.4
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 6.7e-08 62.4 203 29.1
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 2.0e-07 60.8 194 26.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 3.3e-07 60.1 281 23.5
Pp3c7_11890 Physcomitrium patens HOM05D005131 ORTHO05D006645 3.3e-07 60.1 135 32.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 3.3e-07 60.1 231 26.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 4.4e-07 59.7 121 33.9
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-07 59.3 194 26.8
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-07 59.3 193 26.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-07 59.3 193 26.4
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-07 59.3 194 26.8
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.7e-07 59.3 194 26.8
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 5.7e-07 59.3 205 29.3
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.4e-07 58.9 194 26.3
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 7.4e-07 58.9 194 26.3
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 7.4e-07 58.9 209 29.7
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 7.4e-07 58.9 219 28.3
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 9.7e-07 58.5 194 26.8
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-06 57.0 130 32.3
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 6.3e-06 55.8 119 31.9
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 6.3e-06 55.8 135 30.4
FvH4_2g19461 Fragaria vesca HOM05D005131 ORTHO05D006645 8.2e-06 55.5 51 43.1


User provided reference genes

Program Settings