Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G869.16 Capsicum annuum HOM05D005836 ORTHO05D007335 4.8e-123 444.5 223 100.0
PGSC0003DMG400020645 Solanum tuberosum HOM05D005836 ORTHO05D007335 1.1e-100 370.2 223 83.9
Sopen06g002640 Solanum pennellii HOM05D005836 ORTHO05D007335 5.7e-100 367.9 223 83.0
Solyc06g007760.4 Solanum lycopersicum HOM05D005836 ORTHO05D007335 3.5e-97 358.6 221 81.9
Nitab4.5_0002985g0050 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.7e-91 338.6 225 77.8
Nitab4.5_0002641g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 3.1e-90 335.5 223 78.9
Peaxi162Scf00293g00715 Petunia axillaris HOM05D005836 ORTHO05D007335 9.8e-84 313.9 224 73.2
Cc01_g15580 Coffea canephora HOM05D005836 ORTHO05D007335 1.7e-83 313.2 227 72.2
Peaxi162Scf00372g00716 Petunia axillaris HOM05D005836 ORTHO05D007335 3.7e-83 312.0 213 76.1
Nitab4.5_0000195g0180 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.5e-79 299.3 225 72.0
Hma1.2p1_0161F.1_g071980 Hydrangea macrophylla HOM05D005836 ORTHO05D007335 2.9e-72 275.8 229 65.5
CSS0005992 Camellia sinensis var. sinensis HOM05D005836 ORTHO05D007335 3.3e-71 272.3 165 81.2
Oeu023901.1 Olea europaea HOM05D005836 ORTHO05D007335 4.3e-71 271.9 217 67.3
MSTRG.17936 Avicennia marina HOM05D005836 ORTHO05D007335 1.2e-70 270.4 226 66.4
Actinidia34513 Actinidia chinensis HOM05D005836 ORTHO05D007335 2.8e-70 269.2 186 74.2
HanXRQChr01g0013111 Helianthus annuus HOM05D005836 ORTHO05D007335 3.6e-70 268.9 203 67.5
SalBow2G1106 Salvia bowleyana HOM05D005836 ORTHO05D007335 8.9e-69 264.2 227 65.2
Rhsim01G0245400 Rhododendron simsii HOM05D005836 ORTHO05D007335 1.2e-68 263.8 161 80.7
Lsat_1_v5_gn_5_176900 Lactuca sativa HOM05D005836 ORTHO05D007335 2.2e-67 259.6 167 74.3
Nitab4.5_0002399g0060 Nicotiana tabacum HOM05D005836 ORTHO05D007335 2.9e-67 259.2 221 64.7
TAR633G1361 Trochodendron aralioides HOM05D005836 ORTHO05D007335 2.9e-67 259.2 164 78.7
Lalb_Chr17g0345731 Lupinus albus HOM05D005836 ORTHO05D007335 3.7e-67 258.8 170 77.1
QL01p023545 Quercus lobata HOM05D005836 ORTHO05D007335 4.9e-67 258.5 227 63.9
QL01p023477 Quercus lobata HOM05D005836 ORTHO05D007335 8.3e-67 257.7 227 62.6
GSVIVG01024524001 Vitis vinifera HOM05D005836 ORTHO05D007335 8.3e-67 257.7 178 73.6
SGA_v2.0_scaffold77G25345 Striga asiatica HOM05D005836 ORTHO05D007335 1.1e-66 257.3 224 62.5
Manes.18G122400 Manihot esculenta HOM05D005836 ORTHO05D007335 4.1e-66 255.4 166 77.1
Potri.013G161000 Populus trichocarpa HOM05D005836 ORTHO05D007335 4.1e-66 255.4 163 77.3
Sabra13G0128800 Salix brachista HOM05D005836 ORTHO05D007335 5.4e-66 255.0 163 77.3
Cfa011862 Carpinus fangiana HOM05D005836 ORTHO05D007335 1.2e-65 253.8 159 79.9
Lj1C109T5 Lonicera japonica HOM05D005836 ORTHO05D007335 1.2e-65 253.8 210 64.3
Dinv28763 Davidia involucrata HOM05D005836 ORTHO05D007335 1.6e-65 253.4 236 61.0
PGR119G1588 Punica granatum HOM05D005836 ORTHO05D007335 1.6e-65 253.4 174 71.3
Ciclev10002134m.g Citrus clementina HOM05D005836 ORTHO05D007335 3.5e-65 252.3 190 70.0
Lalb_Chr10g0103941 Lupinus albus HOM05D005836 ORTHO05D007335 3.5e-65 252.3 232 60.8
ClCG02G018930 Citrullus lanatus HOM05D005836 ORTHO05D007335 1.3e-64 250.4 156 80.1
Glyma.18G049400 Glycine max HOM05D005836 ORTHO05D007335 1.7e-64 250.0 159 78.0
Thecc.09G366400 Theobroma cacao HOM05D005836 ORTHO05D007335 1.7e-64 250.0 165 75.2
Ca_15089_v3 Cicer arietinum L. HOM05D005836 ORTHO05D007335 3.0e-64 249.2 160 76.2
DCAR_018590 Daucus carota HOM05D005836 ORTHO05D007335 3.0e-64 249.2 160 76.9
ECA248G3143 Erigeron canadensis HOM05D005836 ORTHO05D007335 3.9e-64 248.8 167 71.9
COL.COLO4_11235 Corchorus olitorius HOM05D005836 ORTHO05D007335 1.1e-63 247.3 164 75.0
MELO3C019598.2 Cucumis melo HOM05D005836 ORTHO05D007335 1.1e-63 247.3 223 62.3
arahy.Tifrunner.gnm1.ann1.JICC5Y Arachis hypogaea HOM05D005836 ORTHO05D007335 1.5e-63 246.9 159 78.0
Haze_24497 Corylus avellana HOM05D005836 ORTHO05D007335 1.5e-63 246.9 171 73.7
arahy.Tifrunner.gnm1.ann1.IJ2DEQ Arachis hypogaea HOM05D005836 ORTHO05D007335 3.3e-63 245.7 159 78.0
arahy.Tifrunner.gnm1.ann1.R5IFJT Arachis hypogaea HOM05D005836 ORTHO05D007335 3.3e-63 245.7 159 78.0
CsaV3_6G013260 Cucumis sativus L. HOM05D005836 ORTHO05D007335 7.3e-63 244.6 210 63.3
CANSAT54G2930 Cannabis sativa HOM05D005836 ORTHO05D007335 9.5e-63 244.2 203 63.1
PSO339G6500 Papaver somniferum HOM05D005836 ORTHO05D007335 1.2e-62 243.8 214 63.6
Sed0001744 Sechium edule HOM05D005836 ORTHO05D007335 1.2e-62 243.8 153 78.4
CiPaw.13G059700 Carya illinoinensis HOM05D005836 ORTHO05D007335 1.6e-62 243.4 152 77.0
Glyma.11G201500 Glycine max HOM05D005836 ORTHO05D007335 2.1e-62 243.0 188 68.1
Phvul.006G082200 Phaseolus vulgaris HOM05D005836 ORTHO05D007335 2.1e-62 243.0 219 61.2
Gohir.D03G146100 Gossypium hirsutum HOM05D005836 ORTHO05D007335 3.6e-62 242.3 152 77.0
VMungo0540G1704 Vigna mungo HOM05D005836 ORTHO05D007335 3.6e-62 242.3 207 64.3
Duzib168G0065 Durio zibethinus HOM05D005836 ORTHO05D007335 4.7e-62 241.9 150 77.3
Gohir.A03G022600 Gossypium hirsutum HOM05D005836 ORTHO05D007335 4.7e-62 241.9 215 61.4
Atru.chr10.2368 Acer truncatum HOM05D005836 ORTHO05D007335 6.2e-62 241.5 196 63.8
Eucgr.L00742 Eucalyptus grandis HOM05D005836 ORTHO05D007335 8.0e-62 241.1 165 73.3
TPR.G13816 Trifolium pratense HOM05D005836 ORTHO05D007335 8.0e-62 241.1 165 72.7
Os03g0331600 Oryza sativa ssp. japonica HOM05D005836 ORTHO05D007335 1.4e-61 240.4 166 73.5
PSO384G1899 Papaver somniferum HOM05D005836 ORTHO05D007335 1.8e-61 240.0 214 62.6
unitig_60.g25569 Utricularia gibba HOM05D005836 ORTHO05D007335 2.3e-61 239.6 218 61.0
CDE07G0908 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 3.1e-61 239.2 220 60.5
MD11G1049300 Malus domestica HOM05D005836 ORTHO05D007335 4.0e-61 238.8 165 73.3
Aqoxy2G00686 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 5.2e-61 238.4 226 60.6
Hund16557 Selenicereus undatus HOM05D005836 ORTHO05D007335 6.8e-61 238.0 133 86.5
Sc03g0000150 Simmondsia chinensis HOM05D005836 ORTHO05D007335 8.9e-61 237.7 167 68.9
TWI31G0503 Tripterygium wilfordii HOM05D005836 ORTHO05D007335 8.9e-61 237.7 179 70.4
vmacro14659 Vaccinium macrocarpon HOM05D005836 ORTHO05D007335 8.9e-61 237.7 138 82.6
AUR62027208 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.2e-60 237.3 162 72.2
Medtr3g062920 Medicago truncatula HOM05D005836 ORTHO05D007335 1.2e-60 237.3 166 69.9
Thhalv10014671m.g Eutrema salsugineum HOM05D005836 ORTHO05D007335 1.5e-60 236.9 155 74.8
FAN16G0502 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.5e-60 236.9 184 65.8
FAN21G0342 Fragaria x ananassa HOM05D005836 ORTHO05D007335 1.5e-60 236.9 184 65.8
Migut.N00709 Erythranthe guttata HOM05D005836 ORTHO05D007335 3.4e-60 235.7 211 62.6
RcHm_v2.0_Chr5g0074011 Rosa chinensis HOM05D005836 ORTHO05D007335 3.4e-60 235.7 154 74.0
Nn5g26758 Nelumbo nucifera HOM05D005836 ORTHO05D007335 4.4e-60 235.3 236 56.8
THA.LOC104809827 Tarenaya hassleriana HOM05D005836 ORTHO05D007335 5.8e-60 235.0 147 76.9
Psat5g146440 Pisum sativum HOM05D005836 ORTHO05D007335 9.8e-60 234.2 164 71.3
FvH4_3g41200 Fragaria vesca HOM05D005836 ORTHO05D007335 1.3e-59 233.8 184 65.2
Lj6g0005555 Lotus japonicus HOM05D005836 ORTHO05D007335 1.3e-59 233.8 207 60.4
unitig_0.g428 Utricularia gibba HOM05D000994 ORTHO05D007335 1.3e-59 233.8 218 58.3
AUR62003260 Chenopodium quinoa HOM05D005836 ORTHO05D007335 1.7e-59 233.4 134 82.8
Sp6g19910 Schrenkiella parvula HOM05D005836 ORTHO05D007335 1.7e-59 233.4 155 72.9
A03p12350 Brassica napus HOM05D000347 ORTHO05D001997 2.9e-59 232.6 156 72.4
BraA03t10547Z Brassica rapa HOM05D000347 ORTHO05D001997 2.9e-59 232.6 156 72.4
MD03G1046500 Malus domestica HOM05D005836 ORTHO05D007335 2.9e-59 232.6 162 72.2
Zm00001eb015790 Zea mays HOM05D005836 ORTHO05D007335 3.7e-59 232.3 153 73.9
Aa31LG11G40 Aethionema arabicum HOM05D005836 ORTHO05D007335 6.4e-59 231.5 151 72.8
BcaB01g04542 Brassica carinata HOM05D005836 ORTHO05D007335 8.3e-59 231.1 151 73.5
A10p15970 Brassica napus HOM05D000347 ORTHO05D001997 1.1e-58 230.7 151 73.5
BraA10t43628Z Brassica rapa HOM05D005836 ORTHO05D007335 2.4e-58 229.6 151 72.8
EL10As13g24050 Beta vulgaris HOM05D005836 ORTHO05D007335 3.2e-58 229.2 127 85.8
BcaC04g19899 Brassica carinata HOM05D005836 ORTHO05D007335 5.4e-58 228.4 151 72.8
C09p50080 Brassica napus HOM05D000347 ORTHO05D001997 5.4e-58 228.4 151 72.8
BolC9t57862H Brassica oleracea HOM05D005836 ORTHO05D007335 5.4e-58 228.4 151 72.8
SEGI_40201 Sequoiadendron giganteum HOM05D005836 ORTHO05D007335 5.4e-58 228.4 199 58.8
Manes.02G210261 Manihot esculenta HOM05D005836 ORTHO05D007335 9.2e-58 227.6 174 70.1
CARHR272060 Cardamine hirsuta HOM05D005836 ORTHO05D007335 1.6e-57 226.9 151 70.9
BcaB01g04482 Brassica carinata HOM05D005836 ORTHO05D007335 2.0e-57 226.5 204 56.4
Carub.0008s1879 Capsella rubella HOM05D005836 ORTHO05D007335 1.3e-56 223.8 155 70.3
C03p14500 Brassica napus HOM05D000347 ORTHO05D001997 6.6e-56 221.5 132 78.8
ATR1127G006 Amborella trichopoda HOM05D005836 ORTHO05D007335 8.6e-56 221.1 156 73.1
AT5G58250 Arabidopsis thaliana HOM05D005836 ORTHO05D007335 1.1e-55 220.7 159 67.9
BcaB01g04547 Brassica carinata HOM05D005836 ORTHO05D007335 1.9e-55 219.9 132 77.3
BolC3t13893H Brassica oleracea HOM05D000347 ORTHO05D001997 1.9e-55 219.9 132 77.3
AL8G34350 Arabidopsis lyrata HOM05D005836 ORTHO05D007335 3.3e-55 219.2 186 61.3
Oeu020454.1 Olea europaea HOM05D005836 ORTHO05D007335 9.5e-55 217.6 130 80.0
MBI15_g05585_MAGBIO Magnolia biondii HOM05D005836 ORTHO05D007335 2.8e-54 216.1 124 81.5
Ah.02g126180 Amaranthus hybridus HOM05D002324 ORTHO05D002380 2.9e-51 206.1 207 60.4
SGA_v2.0_scaffold77G25340 Striga asiatica HOM05D005836 ORTHO05D007335 2.9e-51 206.1 225 55.1
SMO358G0359 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 1.2e-46 190.7 131 67.2
Mapoly0086s0004 Marchantia polymorpha HOM05D005836 ORTHO05D007335 6.2e-46 188.3 175 54.9
Pp3c13_24050 Physcomitrium patens HOM05D005836 ORTHO05D007335 6.2e-46 188.3 146 63.0
AagrBONN_evm.TU.Sc2ySwM_117.3281 Anthoceros agrestis HOM05D005836 ORTHO05D007335 5.8e-44 181.8 130 65.4
Pp3c4_20840 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.4e-42 177.2 141 59.6
Pp3c4_20850 Physcomitrium patens HOM05D005836 ORTHO05D007335 1.4e-42 177.2 141 59.6
Pp3c3_13470 Physcomitrium patens HOM05D005836 ORTHO05D007335 9.2e-42 174.5 143 57.3
CDE06G1816 Ceratophyllum demersum HOM05D005836 ORTHO05D007335 1.1e-37 161.0 171 56.7
Prupe.6G037800 Prunus persica HOM05D005836 ORTHO05D007335 4.9e-35 152.1 149 58.4
Manes.15G179716 Manihot esculenta HOM05D005836 ORTHO05D007335 5.1e-32 142.1 80 82.5
Manes.15G179664 Manihot esculenta HOM05D005836 ORTHO05D007335 1.1e-31 141.0 77 85.7
Peaxi162Scf00372g00721 Petunia axillaris HOM05D005836 ORTHO05D007335 1.6e-30 137.1 118 61.9
Cre12.g490500 Chlamydomonas reinhardtii HOM05D005836 ORTHO05D007335 1.2e-25 120.9 132 50.0
MCO04G442 Micromonas commoda HOM05D005836 ORTHO05D007335 8.1e-22 108.2 119 44.5
HanXRQChr11g0338221 Helianthus annuus HOM05D005836 ORTHO05D007335 1.8e-21 107.1 64 75.0
Manes.15G176000 Manihot esculenta HOM05D005836 ORTHO05D007335 4.0e-21 105.9 88 67.0
Cpa.g.sc2.251 Carica papaya HOM05D005836 ORTHO05D007335 5.8e-20 102.1 62 72.6
CAN.G297.12 Capsicum annuum HOM05D005836 ORTHO05D000001 2.9e-19 99.8 56 85.7
Actinidia23823 Actinidia chinensis HOM05D005836 ORTHO05D007335 6.4e-19 98.6 87 64.4
PRCOL_00000331 Prasinoderma coloniale HOM05D005836 ORTHO05D007335 6.4e-19 98.6 140 39.3
CAN.G297.11 Capsicum annuum HOM05D005836 ORTHO05D000001 1.9e-18 97.1 49 91.8
SGA_v2.0_scaffold120G33007 Striga asiatica HOM05D002254 ORTHO05D007410 3.2e-18 96.3 60 80.0
Aqoxy392s001 Aquilegia oxysepala HOM05D005836 ORTHO05D007335 4.0e-13 79.3 102 45.1
SMO173G0022 Selaginella moellendorffii HOM05D005836 ORTHO05D007335 8.4e-11 71.6 46 67.4
BcaB01g04538 Brassica carinata HOM05D005836 ORTHO05D007335 3.5e-09 66.2 33 87.9
HPP92_024987 Vanilla planifolia HOM05D005836 ORTHO05D007335 4.3e-07 59.3 74 47.3
Cpa.g.sc2.250 Carica papaya HOM05D005836 ORTHO05D007335 5.7e-07 58.9 51 62.7


User provided reference genes

Program Settings