Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G866.39 Capsicum annuum HOM05D000001 ORTHO05D038489 9.4e-53 209.9 106 100.0
CAN.G438.42 Capsicum annuum HOM05D000001 ORTHO05D009971 3.2e-24 115.2 114 57.0
Nitab4.5_0002424g0060 Nicotiana tabacum HOM05D000001 ORTHO05D009971 1.2e-23 113.2 114 57.0
PGSC0003DMG400002556 Solanum tuberosum HOM05D000001 ORTHO05D009971 1.2e-23 113.2 114 56.1
Sopen00g010440 Solanum pennellii HOM05D000001 ORTHO05D009971 4.6e-23 111.3 114 55.3
Sopen03g039340 Solanum pennellii HOM05D000001 ORTHO05D009971 4.6e-23 111.3 114 55.3
Nitab4.5_0005203g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009971 6.0e-23 110.9 113 55.8
Solyc03g120460.4 Solanum lycopersicum HOM05D000001 ORTHO05D009971 6.0e-23 110.9 114 55.3
Peaxi162Scf00047g00192 Petunia axillaris HOM05D000001 ORTHO05D009971 8.6e-22 107.1 114 55.3
MSTRG.24660 Avicennia marina HOM05D000001 ORTHO05D009971 7.5e-18 94.0 114 48.2
Oeu011222.1 Olea europaea HOM05D000001 ORTHO05D009971 1.1e-16 90.1 113 46.9
Atru.chr4.1917 Acer truncatum HOM05D000001 ORTHO05D009971 2.4e-16 89.0 114 45.6
Dinv36233 Davidia involucrata HOM05D000001 ORTHO05D009971 9.2e-16 87.0 114 46.5
Lj6P622T25 Lonicera japonica HOM05D000001 ORTHO05D009971 1.6e-15 86.3 114 43.9
Actinidia23903 Actinidia chinensis HOM05D000001 ORTHO05D009971 3.0e-14 82.0 109 44.0
Sed0005379 Sechium edule HOM05D000001 ORTHO05D009971 5.1e-14 81.3 114 42.1
Prupe.1G048200 Prunus persica HOM05D000001 ORTHO05D009971 1.1e-13 80.1 114 44.7
Nn3g19776 Nelumbo nucifera HOM05D000001 ORTHO05D009971 1.9e-13 79.3 114 43.9
Ciclev10004631m.g Citrus clementina HOM05D000001 ORTHO05D009971 2.5e-13 79.0 114 42.1
Haze_11457 Corylus avellana HOM05D000001 ORTHO05D009971 3.3e-13 78.6 116 44.0
RcHm_v2.0_Chr4g0395381 Rosa chinensis HOM05D000001 ORTHO05D009971 3.3e-13 78.6 114 43.0
arahy.Tifrunner.gnm1.ann1.3WH4I0 Arachis hypogaea HOM05D000001 ORTHO05D009971 4.3e-13 78.2 114 38.6
CiPaw.01G178100 Carya illinoinensis HOM05D000001 ORTHO05D009971 4.3e-13 78.2 114 42.1
Eucgr.H00129 Eucalyptus grandis HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 39.5
Gohir.A02G042900 Gossypium hirsutum HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 40.4
Gohir.D02G048600 Gossypium hirsutum HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 40.4
Gorai.005G053800 Gossypium raimondii HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 40.4
Hma1.2p1_1313F.1_g274930 Hydrangea macrophylla HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 42.1
Psat7g084960 Pisum sativum HOM05D000001 ORTHO05D009971 1.2e-12 76.6 114 40.4
Rhsim01G0234500 Rhododendron simsii HOM05D000001 ORTHO05D009971 1.2e-12 76.6 109 44.0
CANSAT78G1721 Cannabis sativa HOM05D000001 ORTHO05D009971 1.6e-12 76.3 114 40.4
Cfa014779 Carpinus fangiana HOM05D000001 ORTHO05D009971 1.6e-12 76.3 116 43.1
Duzib212G0468 Durio zibethinus HOM05D000001 ORTHO05D009971 1.6e-12 76.3 114 41.2
MD13G1221300 Malus domestica HOM05D000001 ORTHO05D009971 1.6e-12 76.3 114 42.1
Phvul.002G183800 Phaseolus vulgaris HOM05D000001 ORTHO05D009971 2.1e-12 75.9 114 39.5
arahy.Tifrunner.gnm1.ann1.LQ0E5X Arachis hypogaea HOM05D000001 ORTHO05D009971 4.7e-12 74.7 114 36.8
Ca_18189_v3 Cicer arietinum L. HOM05D000001 ORTHO05D009971 4.7e-12 74.7 114 39.5
Migut.N00300 Erythranthe guttata HOM05D000001 ORTHO05D009971 8.1e-12 73.9 113 39.8
Glyma.08G092900 Glycine max HOM05D000001 ORTHO05D009971 8.1e-12 73.9 114 39.5
arahy.Tifrunner.gnm1.ann1.YU644E Arachis hypogaea HOM05D000001 ORTHO05D009971 1.1e-11 73.6 114 36.8
Lalb_Chr07g0187911 Lupinus albus HOM05D000001 ORTHO05D009971 1.1e-11 73.6 114 39.5
FvH4_4g04611 Fragaria vesca HOM05D000001 ORTHO05D009971 1.8e-11 72.8 114 40.4
TAR633G0765 Trochodendron aralioides HOM05D000001 ORTHO05D009971 2.3e-11 72.4 114 42.1
ECA232G2455 Erigeron canadensis HOM05D000001 ORTHO05D009971 3.1e-11 72.0 114 36.8
Glyma.05G137900 Glycine max HOM05D000001 ORTHO05D009971 3.1e-11 72.0 114 38.6
VMungo0251G1492 Vigna mungo HOM05D000001 ORTHO05D009971 3.1e-11 72.0 114 36.8
FAN12G1123 Fragaria x ananassa HOM05D000001 ORTHO05D009971 4.0e-11 71.6 114 39.5
Hma1.2p1_1795F.1_g302690 Hydrangea macrophylla HOM05D000001 ORTHO05D009971 4.0e-11 71.6 114 40.4
FAN22G1054 Fragaria x ananassa HOM05D000001 ORTHO05D009971 5.2e-11 71.2 114 39.5
CSS0031956 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D009971 6.8e-11 70.9 109 40.4
Lj4g0025146 Lotus japonicus HOM05D000001 ORTHO05D009971 6.8e-11 70.9 114 39.5
MELO3C031658.2 Cucumis melo HOM05D000001 ORTHO05D009971 8.9e-11 70.5 114 38.6
Lsat_1_v5_gn_9_42760 Lactuca sativa HOM05D000001 ORTHO05D009971 1.5e-10 69.7 114 36.8
SalBow6G3681 Salvia bowleyana HOM05D000001 ORTHO05D009971 1.5e-10 69.7 114 41.2
TAR625G1482 Trochodendron aralioides HOM05D000001 ORTHO05D009971 1.5e-10 69.7 109 42.2
AUR62035082 Chenopodium quinoa HOM05D000389 ORTHO05D009971 2.0e-10 69.3 114 38.6
TPR.G5133 Trifolium pratense HOM05D000001 ORTHO05D009971 2.0e-10 69.3 105 39.0
MBI10_g44682_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D009971 1.3e-09 66.6 114 39.5
SGA_v2.0_scaffold517G52666 Striga asiatica HOM05D000001 ORTHO05D009971 2.2e-09 65.9 113 40.7
HanXRQChr11g0320491 Helianthus annuus HOM05D000001 ORTHO05D009971 2.9e-09 65.5 114 36.0
Hund11940 Selenicereus undatus HOM05D000001 ORTHO05D009971 3.8e-09 65.1 114 36.8
PGR031G2403 Punica granatum HOM05D000001 ORTHO05D009971 4.9e-09 64.7 115 38.3
Ah.13g072230 Amaranthus hybridus HOM05D000001 ORTHO05D009971 1.1e-08 63.5 114 36.0
HanXRQChr14g0457961 Helianthus annuus HOM05D000001 ORTHO05D009340 5.4e-08 61.2 114 38.6
Cc03_g06280 Coffea canephora HOM05D000001 ORTHO05D009971 7.1e-08 60.8 114 38.6
HanXRQChr12g0356951 Helianthus annuus HOM05D000001 ORTHO05D009340 9.2e-08 60.5 114 37.7
Manes.03G159100 Manihot esculenta HOM05D000001 ORTHO05D009971 1.6e-07 59.7 114 36.8
Ah.04g151840 Amaranthus hybridus HOM05D000001 ORTHO05D009340 2.1e-07 59.3 114 33.3
DCAR_026482 Daucus carota HOM05D000001 ORTHO05D009971 2.1e-07 59.3 114 36.8
TAR636G2817 Trochodendron aralioides HOM05D000001 ORTHO05D000003 3.5e-07 58.5 114 35.1
CAN.G638.40 Capsicum annuum HOM05D000203 ORTHO05D000135 4.6e-07 58.2 46 65.2
Hma1.2p1_0055F.1_g031450 Hydrangea macrophylla HOM05D000001 ORTHO05D009971 4.6e-07 58.2 87 40.2
SEGI_01750 Sequoiadendron giganteum HOM05D000001 ORTHO05D000003 6.0e-07 57.8 114 32.5
EL10Ac2g02834 Beta vulgaris HOM05D006558 ORTHO05D009340 1.0e-06 57.0 114 32.5
Aqoxy4G02262 Aquilegia oxysepala HOM05D000001 ORTHO05D078054 1.3e-06 56.6 55 54.5
Sabra10G0041500 Salix brachista HOM05D008157 ORTHO05D009575 1.3e-06 56.6 102 35.3
Cpa.g.sc27.13 Carica papaya HOM05D000001 ORTHO05D000003 1.7e-06 56.2 106 35.8
COL.COLO4_31427 Corchorus olitorius HOM05D000001 ORTHO05D000003 2.3e-06 55.8 106 36.8
SGA_v2.0_scaffold313G48312 Striga asiatica HOM05D000001 ORTHO05D004820 3.0e-06 55.5 106 36.8
Rhsim05G0186300 Rhododendron simsii HOM05D000001 ORTHO05D000003 3.9e-06 55.1 114 34.2
Sed0005722 Sechium edule HOM05D000001 ORTHO05D000003 3.9e-06 55.1 114 35.1
SEGI_38900 Sequoiadendron giganteum HOM05D000001 ORTHO05D004533 3.9e-06 55.1 107 37.4
vmacro11845 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.9e-06 55.1 116 31.0
Actinidia05652 Actinidia chinensis HOM05D000001 ORTHO05D000003 5.1e-06 54.7 106 37.7
Aqoxy4G02261 Aquilegia oxysepala HOM05D000001 ORTHO05D038489 5.1e-06 54.7 55 50.9
AT4G02750 Arabidopsis thaliana HOM05D000001 ORTHO05D000003 5.1e-06 54.7 109 34.9
Glyma.08G086500 Glycine max HOM05D000001 ORTHO05D009069 5.1e-06 54.7 113 36.3
MBI16_g36317_MAGBIO Magnolia biondii HOM05D000001 ORTHO05D000003 5.1e-06 54.7 114 33.3
Nn6g34800 Nelumbo nucifera HOM05D000001 ORTHO05D000003 5.1e-06 54.7 114 32.5
SGA_v2.0_scaffold3365G54323 Striga asiatica HOM05D000001 ORTHO05D000003 5.1e-06 54.7 106 36.8
SGA_v2.0_scaffold77G25207 Striga asiatica HOM05D000001 ORTHO05D000003 5.1e-06 54.7 106 36.8
THA.LOC104809624 Tarenaya hassleriana HOM05D000001 ORTHO05D000003 5.1e-06 54.7 114 32.5
MD10G1290200 Malus domestica HOM05D000001 ORTHO05D000003 6.6e-06 54.3 106 35.8
TWI38G0505 Tripterygium wilfordii HOM05D000001 ORTHO05D000003 6.6e-06 54.3 106 35.8
CARHR251090 Cardamine hirsuta HOM05D000001 ORTHO05D000003 8.6e-06 53.9 109 33.9
Ciclev10018358m.g Citrus clementina HOM05D000001 ORTHO05D000003 8.6e-06 53.9 113 33.6
ECA247G2109 Erigeron canadensis HOM05D000807 ORTHO05D000662 8.6e-06 53.9 114 33.3
Thhalv10024626m.g Eutrema salsugineum HOM05D000001 ORTHO05D000003 8.6e-06 53.9 114 35.1
Potri.004G047800 Populus trichocarpa HOM05D000001 ORTHO05D000003 8.6e-06 53.9 106 35.8
Sed0018096 Sechium edule HOM05D000001 ORTHO05D000003 8.6e-06 53.9 114 34.2
vmacro01293 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 8.6e-06 53.9 114 33.3


User provided reference genes

Program Settings