Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G86.35 Capsicum annuum HOM05D007156 ORTHO05D003871 4.8e-64 247.7 125 100.0
PGSC0003DMG400026188 Solanum tuberosum HOM05D007156 ORTHO05D003871 2.3e-37 159.1 127 74.8
Nitab4.5_0009996g0020 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.3e-34 149.1 132 68.9
Sopen07g026540 Solanum pennellii HOM05D007156 ORTHO05D003871 7.8e-30 134.0 127 65.4
Nitab4.5_0001302g0030 Nicotiana tabacum HOM05D007156 ORTHO05D003871 2.2e-24 115.9 131 58.0
Peaxi162Scf00012g00273 Petunia axillaris HOM05D007156 ORTHO05D003871 2.4e-23 112.5 120 60.0
Solyc07g052990.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 4.3e-20 101.7 88 71.6
Nitab4.5_0001134g0060 Nicotiana tabacum HOM05D007156 ORTHO05D003871 1.2e-17 93.6 122 54.1
Hma1.2p1_0712F.1_g207550 Hydrangea macrophylla HOM05D007156 ORTHO05D003871 1.3e-16 90.1 118 51.7
Ciclev10017232m.g Citrus clementina HOM05D007156 ORTHO05D003871 2.4e-15 85.9 114 44.7
TAR271G0004 Trochodendron aralioides HOM05D007156 ORTHO05D003871 3.2e-15 85.5 122 45.9
Lj3g0000666 Lotus japonicus HOM05D007156 ORTHO05D003871 5.4e-15 84.7 133 42.9
Solyc12g005690.1 Solanum lycopersicum HOM05D007156 ORTHO05D003871 5.4e-15 84.7 126 45.2
Manes.12G077701 Manihot esculenta HOM05D007156 ORTHO05D003871 9.2e-15 84.0 116 46.6
PGSC0003DMG400013754 Solanum tuberosum HOM05D007156 ORTHO05D003871 1.2e-14 83.6 96 56.2
FvH4_6g43890 Fragaria vesca HOM05D007156 ORTHO05D003871 2.1e-14 82.8 113 43.4
FAN02G1242 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-14 82.8 113 43.4
FAN09G0550 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-14 82.8 113 43.4
FAN14G5947 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.1e-14 82.8 113 43.4
RcHm_v2.0_Chr2g0160641 Rosa chinensis HOM05D007156 ORTHO05D003871 2.1e-14 82.8 117 44.4
FAN05G2387 Fragaria x ananassa HOM05D007156 ORTHO05D003871 2.7e-14 82.4 113 43.4
Sed0007405 Sechium edule HOM05D007156 ORTHO05D003871 2.7e-14 82.4 49 79.6
CSS0000680 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 3.5e-14 82.0 127 47.2
MSTRG.6540 Avicennia marina HOM05D007156 ORTHO05D003871 7.8e-14 80.9 127 44.9
QL08p034497 Quercus lobata HOM05D007156 ORTHO05D003871 7.8e-14 80.9 122 45.1
Potri.019G125100 Populus trichocarpa HOM05D007156 ORTHO05D003871 1.3e-13 80.1 120 43.3
Cfa014479 Carpinus fangiana HOM05D007156 ORTHO05D003871 1.7e-13 79.7 126 47.6
MBI02_g42365_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.7e-13 79.7 101 45.5
CiPaw.03G165400 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.3e-13 79.3 130 44.6
CiPaw.04G120100 Carya illinoinensis HOM05D007156 ORTHO05D003871 2.3e-13 79.3 127 43.3
Haze_12992 Corylus avellana HOM05D007156 ORTHO05D003871 3.0e-13 79.0 122 45.9
Sabra19G0123400 Salix brachista HOM05D007156 ORTHO05D003871 3.0e-13 79.0 120 43.3
Cpa.g.sc34.47 Carica papaya HOM05D007156 ORTHO05D003871 3.9e-13 78.6 118 45.8
MBI02_g43089_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.9e-13 78.6 99 45.5
MBI18_g20355_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 3.9e-13 78.6 76 57.9
Potri.013G152300 Populus trichocarpa HOM05D007156 ORTHO05D003871 3.9e-13 78.6 121 42.1
ClCG02G001520 Citrullus lanatus HOM05D007156 ORTHO05D003871 5.1e-13 78.2 49 73.5
Eucgr.A01740 Eucalyptus grandis HOM05D007156 ORTHO05D003871 5.1e-13 78.2 47 80.9
Migut.M00380 Erythranthe guttata HOM05D007156 ORTHO05D003871 6.6e-13 77.8 124 43.5
Glyma.12G103200 Glycine max HOM05D007156 ORTHO05D003871 6.6e-13 77.8 55 70.9
Thecc.02G165500 Theobroma cacao HOM05D007156 ORTHO05D003871 6.6e-13 77.8 130 43.8
MBI02_g42366_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.6e-13 77.4 79 54.4
MBI02_g43088_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 8.6e-13 77.4 79 54.4
Psat7g163320 Pisum sativum HOM05D007156 ORTHO05D003871 8.6e-13 77.4 132 43.9
Prupe.3G223500 Prunus persica HOM05D007156 ORTHO05D003871 8.6e-13 77.4 53 75.5
Actinidia12482 Actinidia chinensis HOM05D007156 ORTHO05D003871 1.1e-12 77.0 81 59.3
TPR.G19047 Trifolium pratense HOM05D007156 ORTHO05D003871 1.1e-12 77.0 80 56.2
Peaxi162Scf00007g00157 Petunia axillaris HOM05D007156 ORTHO05D003871 1.5e-12 76.6 54 77.8
Sabra13G0122400 Salix brachista HOM05D007156 ORTHO05D003871 1.5e-12 76.6 121 42.1
VMungo1127G0041 Vigna mungo HOM05D007156 ORTHO05D003871 1.5e-12 76.6 61 65.6
Glyma.06G301200 Glycine max HOM05D007156 ORTHO05D003871 2.5e-12 75.9 61 67.2
Sabra19G0131200 Salix brachista HOM05D007156 ORTHO05D003871 2.5e-12 75.9 119 40.3
Atru.chr6.3108 Acer truncatum HOM05D007156 ORTHO05D003871 3.3e-12 75.5 119 39.5
Phvul.011G107900 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 5.6e-12 74.7 61 63.9
unitig_746.g26730 Utricularia gibba HOM05D007156 ORTHO05D003871 9.5e-12 73.9 79 55.7
Medtr0945s0020 Medicago truncatula HOM05D007156 ORTHO05D003871 1.2e-11 73.6 57 66.7
COL.COLO4_13040 Corchorus olitorius HOM05D007156 ORTHO05D003871 2.8e-11 72.4 123 43.9
Glyma.13G304200 Glycine max HOM05D007156 ORTHO05D003871 3.6e-11 72.0 72 58.3
Lalb_Chr24g0393601 Lupinus albus HOM05D007156 ORTHO05D003871 3.6e-11 72.0 76 50.0
MBI18_g38397_MAGBIO Magnolia biondii HOM05D007156 ORTHO05D003871 1.8e-10 69.7 75 54.7
CSS0043735 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 2.3e-10 69.3 92 48.9
Dinv18559 Davidia involucrata HOM05D007156 ORTHO05D003871 2.3e-10 69.3 118 41.5
VMungo1080G0311 Vigna mungo HOM05D007156 ORTHO05D003871 3.1e-10 68.9 80 51.2
Psat5g266920 Pisum sativum HOM05D007156 ORTHO05D003871 4.0e-10 68.6 67 53.7
MD09G1127500 Malus domestica HOM05D007156 ORTHO05D003871 8.9e-10 67.4 83 47.0
Phvul.005G111100 Phaseolus vulgaris HOM05D007156 ORTHO05D003871 8.9e-10 67.4 126 36.5
Rhsim06G0154900 Rhododendron simsii HOM05D007156 ORTHO05D003871 8.9e-10 67.4 36 86.1
CsaV3_7G003930 Cucumis sativus L. HOM05D007156 ORTHO05D003871 1.2e-09 67.0 54 61.1
arahy.Tifrunner.gnm1.ann1.ABE34K Arachis hypogaea HOM05D007156 ORTHO05D003871 1.5e-09 66.6 58 58.6
Gohir.A03G162600 Gossypium hirsutum HOM05D007156 ORTHO05D003871 3.4e-09 65.5 125 40.8
unitig_899.g15247 Utricularia gibba HOM05D007156 ORTHO05D003871 3.4e-09 65.5 56 58.9
CSS0048777 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 4.4e-09 65.1 41 65.9
Lj3g0015957 Lotus japonicus HOM05D007156 ORTHO05D003871 5.8e-09 64.7 47 72.3
Sed0001937 Sechium edule HOM05D007156 ORTHO05D003871 5.8e-09 64.7 49 65.3
Nn2g11286 Nelumbo nucifera HOM05D007156 ORTHO05D003871 7.5e-09 64.3 76 43.4
Dinv17859 Davidia involucrata HOM05D001601 ORTHO05D006936 1.3e-08 63.5 58 56.9
Gorai.005G208200 Gossypium raimondii HOM05D007156 ORTHO05D003871 1.3e-08 63.5 125 40.0
MD09G1102100 Malus domestica HOM05D007156 ORTHO05D003871 1.3e-08 63.5 33 87.9
PGSC0003DMG400037339 Solanum tuberosum HOM05D007866 ORTHO05D003871 1.3e-08 63.5 62 51.6
Ca_01559_v3 Cicer arietinum L. HOM05D007156 ORTHO05D003871 2.2e-08 62.8 48 64.6
MD12G1154500 Malus domestica HOM05D007866 ORTHO05D003871 2.2e-08 62.8 64 51.6
ATR0804G053 Amborella trichopoda HOM05D007156 ORTHO05D003871 2.9e-08 62.4 123 37.4
Gohir.D02G185700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 2.9e-08 62.4 125 40.0
BcaC01g04222 Brassica carinata HOM05D007866 ORTHO05D003871 3.7e-08 62.0 60 51.7
Nitab4.5_0008116g0010 Nicotiana tabacum HOM05D007866 ORTHO05D003871 6.4e-08 61.2 95 38.9
SGA_v2.0_scaffold70G23435 Striga asiatica HOM05D007156 ORTHO05D003871 6.4e-08 61.2 117 40.2
C03p43730 Brassica napus HOM05D007866 ORTHO05D003871 8.3e-08 60.8 60 51.7
TPR.G18057 Trifolium pratense HOM05D007156 ORTHO05D003871 8.3e-08 60.8 59 57.6
Lalb_Chr07g0193271 Lupinus albus HOM05D007866 ORTHO05D003871 1.1e-07 60.5 41 63.4
Nitab4.5_0000362g0160 Nicotiana tabacum HOM05D007866 ORTHO05D003871 1.1e-07 60.5 101 36.6
CSS0047873 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 1.4e-07 60.1 128 33.6
Carub.0003s0839 Capsella rubella HOM05D007866 ORTHO05D003871 1.4e-07 60.1 43 65.1
Gorai.002G255600 Gossypium raimondii HOM05D007866 ORTHO05D003871 1.4e-07 60.1 78 38.5
TPR.G32547 Trifolium pratense HOM05D007866 ORTHO05D003871 1.4e-07 60.1 78 41.0
TAR633G1059 Trochodendron aralioides HOM05D007866 ORTHO05D003871 1.4e-07 60.1 45 60.0
Atru.chr8.2088 Acer truncatum HOM05D007866 ORTHO05D003871 1.9e-07 59.7 44 52.3
CARHR083640 Cardamine hirsuta HOM05D007866 ORTHO05D003871 1.9e-07 59.7 57 54.4
Prupe.6G264300 Prunus persica HOM05D007866 ORTHO05D003871 1.9e-07 59.7 78 44.9
Sopen09g006160 Solanum pennellii HOM05D007866 ORTHO05D003871 1.9e-07 59.7 62 48.4
EL10Ac7g16230 Beta vulgaris HOM05D007866 ORTHO05D003871 2.4e-07 59.3 49 55.1
FvH4_6g12750 Fragaria vesca HOM05D007866 ORTHO05D003871 2.4e-07 59.3 118 33.9
FAN14G2102 Fragaria x ananassa HOM05D007866 ORTHO05D003871 2.4e-07 59.3 118 33.9
Gohir.A01G221050 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.4e-07 59.3 71 39.4
Gohir.D01G209950 Gossypium hirsutum HOM05D007866 ORTHO05D003871 2.4e-07 59.3 75 40.0
Lj3g0011949 Lotus japonicus HOM05D007866 ORTHO05D003871 2.4e-07 59.3 38 65.8
THA.LOC104816660 Tarenaya hassleriana HOM05D007866 ORTHO05D003871 4.1e-07 58.5 53 56.6
FAN05G4429 Fragaria x ananassa HOM05D007866 ORTHO05D003871 5.4e-07 58.2 110 29.1
Nitab4.5_0005140g0010 Nicotiana tabacum HOM05D007156 ORTHO05D003871 5.4e-07 58.2 41 56.1
Ciclev10013493m.g Citrus clementina HOM05D007866 ORTHO05D003871 7.1e-07 57.8 68 41.2
Gorai.012G132600 Gossypium raimondii HOM05D007156 ORTHO05D003871 7.1e-07 57.8 61 55.7
Sp3g07650 Schrenkiella parvula HOM05D007866 ORTHO05D003871 7.1e-07 57.8 53 54.7
Dinv18957 Davidia involucrata HOM05D007156 ORTHO05D003871 9.2e-07 57.4 48 58.3
Gohir.A04G106700 Gossypium hirsutum HOM05D007156 ORTHO05D003871 9.2e-07 57.4 64 54.7
Manes.09G098200 Manihot esculenta HOM05D007866 ORTHO05D003871 9.2e-07 57.4 69 44.9
Oeu030552.1 Olea europaea HOM05D007866 ORTHO05D003871 9.2e-07 57.4 40 65.0
Peaxi162Scf00014g00168 Petunia axillaris HOM05D007866 ORTHO05D003871 9.2e-07 57.4 45 53.3
Solyc09g011430.1 Solanum lycopersicum HOM05D007866 ORTHO05D003871 9.2e-07 57.4 39 61.5
FAN09G3925 Fragaria x ananassa HOM05D007866 ORTHO05D003871 1.2e-06 57.0 117 29.9
Rhsim02G0116500 Rhododendron simsii HOM05D007156 ORTHO05D003871 1.2e-06 57.0 37 64.9
BcaB04g18538 Brassica carinata HOM05D007866 ORTHO05D003871 1.6e-06 56.6 57 50.9
BcaB04g18539 Brassica carinata HOM05D007866 ORTHO05D003871 1.6e-06 56.6 57 50.9
CSS0008619 Camellia sinensis var. sinensis HOM05D007156 ORTHO05D003871 1.6e-06 56.6 35 71.4
Lsat_1_v5_gn_8_130461 Lactuca sativa HOM05D025642 ORTHO05D003871 1.6e-06 56.6 84 39.3
Os07g0549100 Oryza sativa ssp. japonica HOM05D052182 ORTHO05D003871 1.6e-06 56.6 50 54.0
RcHm_v2.0_Chr3g0464671 Rosa chinensis HOM05D007866 ORTHO05D003871 1.6e-06 56.6 112 35.7
SalBow4G1352 Salvia bowleyana HOM05D007866 ORTHO05D003871 1.6e-06 56.6 77 41.6
AL3G20400 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.1e-06 56.2 57 50.9
AL70U10030 Arabidopsis lyrata HOM05D007866 ORTHO05D003871 2.1e-06 56.2 57 50.9
BraA03t12778Z Brassica rapa HOM05D007866 ORTHO05D003871 2.1e-06 56.2 57 50.9
ClCG02G011170 Citrullus lanatus HOM05D007156 ORTHO05D003871 2.1e-06 56.2 56 50.0
Sed0003235 Sechium edule HOM05D007156 ORTHO05D003871 2.1e-06 56.2 58 51.7
PGSC0003DMG400019193 Solanum tuberosum HOM05D007866 ORTHO05D003871 2.1e-06 56.2 89 39.3
AT3G09280 Arabidopsis thaliana HOM05D007866 ORTHO05D003871 2.7e-06 55.8 57 50.9
CSS0026310 Camellia sinensis var. sinensis HOM05D007866 ORTHO05D003871 2.7e-06 55.8 44 54.5
Haze_20881 Corylus avellana HOM05D007866 ORTHO05D003871 2.7e-06 55.8 40 60.0
Haze_20890 Corylus avellana HOM05D007866 ORTHO05D003871 2.7e-06 55.8 40 60.0
CsaV3_6G012600 Cucumis sativus L. HOM05D007156 ORTHO05D003871 2.7e-06 55.8 56 51.8
Dinv13866 Davidia involucrata HOM05D039772 ORTHO05D003871 2.7e-06 55.8 93 39.8
PGSC0003DMG400021719 Solanum tuberosum HOM05D001601 ORTHO05D006936 2.7e-06 55.8 47 53.2
Lsat_1_v5_gn_8_84120 Lactuca sativa HOM05D007866 ORTHO05D003871 3.5e-06 55.5 41 61.0
Thhalv10021969m.g Eutrema salsugineum HOM05D007866 ORTHO05D003871 4.6e-06 55.1 57 50.9
Duzib128G0987 Durio zibethinus HOM05D007866 ORTHO05D003871 6.0e-06 54.7 59 45.8
Potri.006G092200 Populus trichocarpa HOM05D007866 ORTHO05D003871 6.0e-06 54.7 100 35.0
PGR031G1324 Punica granatum HOM05D007866 ORTHO05D003871 6.0e-06 54.7 73 41.1
Actinidia29169 Actinidia chinensis HOM05D007866 ORTHO05D003871 7.8e-06 54.3 75 37.3
Sabra04G0016700 Salix brachista HOM05D007156 ORTHO05D003871 7.8e-06 54.3 50 54.0
Sed0027672 Sechium edule HOM05D007866 ORTHO05D003871 7.8e-06 54.3 41 58.5


User provided reference genes

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