Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G859.7 Capsicum annuum HOM05D003520 ORTHO05D003332 0.0e+00 2319.3 1845 100.0
Solyc08g080690.4 Solanum lycopersicum HOM05D003520 ORTHO05D003332 0.0e+00 1462.6 1907 64.4
Sopen08g029000 Solanum pennellii HOM05D003520 ORTHO05D003332 0.0e+00 1388.6 2037 60.4
Nitab4.5_0003604g0010 Nicotiana tabacum HOM05D003520 ORTHO05D003332 0.0e+00 1078.9 1936 49.9
Peaxi162Scf00714g00124 Petunia axillaris HOM05D003520 ORTHO05D003332 2.6e-214 750.7 2174 47.1
Nitab4.5_0003154g0060 Nicotiana tabacum HOM05D003520 ORTHO05D003332 3.5e-179 634.0 933 55.0
PGSC0003DMG400003059 Solanum tuberosum HOM05D003520 ORTHO05D003332 7.4e-145 520.0 806 57.4
Dinv37667 Davidia involucrata HOM05D003520 ORTHO05D003332 5.6e-60 238.0 845 32.0
Oeu049557.4 Olea europaea HOM05D003520 ORTHO05D003332 2.8e-43 182.6 653 28.8
Rhsim07G0092500 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.6e-35 156.8 852 25.4
Dinv38981 Davidia involucrata HOM05D003520 ORTHO05D003332 1.3e-32 147.1 627 36.2
Actinidia05219 Actinidia chinensis HOM05D003520 ORTHO05D003332 2.7e-30 139.4 639 31.5
MSTRG.1884 Avicennia marina HOM05D003520 ORTHO05D003332 1.1e-28 134.0 614 31.6
Cc08_g14270 Coffea canephora HOM05D003520 ORTHO05D003332 2.0e-28 133.3 575 36.7
DCAR_008413 Daucus carota HOM05D003520 ORTHO05D003332 3.3e-28 132.5 770 23.8
Hma1.2p1_0514F.1_g169820 Hydrangea macrophylla HOM05D003520 ORTHO05D003332 9.7e-28 131.0 366 25.7
Thecc.03G274800 Theobroma cacao HOM05D003520 ORTHO05D003332 6.3e-27 128.3 569 26.4
Rhsim07G0193900 Rhododendron simsii HOM05D003520 ORTHO05D003332 1.5e-25 123.6 586 25.9
Actinidia14538 Actinidia chinensis HOM05D003520 ORTHO05D003332 4.5e-25 122.1 524 29.2
MD14G1098200 Malus domestica HOM05D003520 ORTHO05D003332 1.1e-23 117.5 916 24.0
Prupe.5G094800 Prunus persica HOM05D003520 ORTHO05D003332 1.9e-23 116.7 659 24.1
Actinidia02028 Actinidia chinensis HOM05D003520 ORTHO05D003332 3.2e-23 115.9 725 32.1
Lj2C195G2 Lonicera japonica HOM05D003520 ORTHO05D003332 9.4e-23 114.4 807 23.3
HanXRQChr13g0416181 Helianthus annuus HOM05D003520 ORTHO05D003332 1.2e-22 114.0 693 22.4
CSS0024294 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.1e-22 113.2 208 35.1
SalBow1G4878 Salvia bowleyana HOM05D003520 ORTHO05D003332 2.7e-22 112.8 574 34.8
ECA240G0038 Erigeron canadensis HOM05D003520 ORTHO05D003332 1.4e-21 110.5 654 24.2
TAR629G1002 Trochodendron aralioides HOM05D003520 ORTHO05D003332 2.3e-21 109.8 255 33.7
MD06G1076800 Malus domestica HOM05D003520 ORTHO05D003332 5.2e-21 108.6 881 22.5
EL10Ac5g12763 Beta vulgaris HOM05D003520 ORTHO05D003332 6.7e-21 108.2 363 27.8
ClCG01G002970 Citrullus lanatus HOM05D003520 ORTHO05D003332 8.8e-21 107.8 386 25.6
Glyma.05G205100 Glycine max HOM05D003520 ORTHO05D003332 1.5e-20 107.1 267 31.8
Hund11497 Selenicereus undatus HOM05D003520 ORTHO05D003332 2.0e-20 106.7 177 35.6
HanXRQChr03g0084491 Helianthus annuus HOM05D003520 ORTHO05D003332 3.3e-20 105.9 643 23.6
Duzib084G0866 Durio zibethinus HOM05D003520 ORTHO05D003332 9.7e-20 104.4 597 24.0
Cfa012135 Carpinus fangiana HOM05D003520 ORTHO05D003332 8.2e-19 101.3 463 25.7
RcHm_v2.0_Chr7g0198661 Rosa chinensis HOM05D003520 ORTHO05D003332 8.2e-19 101.3 461 25.6
CsaV3_5G003080 Cucumis sativus L. HOM05D003520 ORTHO05D003332 1.4e-18 100.5 577 25.0
Gohir.D11G021400 Gossypium hirsutum HOM05D003520 ORTHO05D003332 1.4e-18 100.5 884 22.3
Gohir.A11G021700 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.4e-18 99.8 954 21.7
Gorai.007G022700 Gossypium raimondii HOM05D003520 ORTHO05D003332 3.1e-18 99.4 887 22.3
TPR.G12816 Trifolium pratense HOM05D003520 ORTHO05D003332 4.1e-18 99.0 261 43.7
TAR375G0279 Trochodendron aralioides HOM05D003520 ORTHO05D003332 4.1e-18 99.0 322 32.3
Manes.02G024900 Manihot esculenta HOM05D003520 ORTHO05D003332 2.0e-17 96.7 532 25.9
SGA_v2.0_scaffold385G50464 Striga asiatica HOM05D003520 ORTHO05D003332 2.6e-17 96.3 386 25.4
Atru.chr9.1567 Acer truncatum HOM05D003520 ORTHO05D000037 7.7e-17 94.7 894 22.8
CiPaw.11G138700 Carya illinoinensis HOM05D003520 ORTHO05D003332 7.7e-17 94.7 905 22.2
FAN08G2904 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.3e-16 94.0 501 25.0
TWI81G1024 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 1.3e-16 94.0 560 25.0
AUR62010600 Chenopodium quinoa HOM05D003520 ORTHO05D003332 2.9e-16 92.8 226 30.5
Sed0002800 Sechium edule HOM05D003520 ORTHO05D003332 8.5e-16 91.3 188 34.0
Lsat_1_v5_gn_6_86801 Lactuca sativa HOM05D003520 ORTHO05D003332 1.9e-15 90.1 614 24.9
CSS0014139 Camellia sinensis var. sinensis HOM05D003520 ORTHO05D003332 2.5e-15 89.7 303 30.4
Ah.12g057370 Amaranthus hybridus HOM05D003520 ORTHO05D003332 4.2e-15 89.0 569 25.5
Ciclev10018609m.g Citrus clementina HOM05D003520 ORTHO05D003332 4.2e-15 89.0 956 25.9
SGA_v2.0_scaffold144G35962 Striga asiatica HOM05D003520 ORTHO05D003332 4.2e-15 89.0 566 22.8
arahy.Tifrunner.gnm1.ann1.AR6NCQ Arachis hypogaea HOM05D003520 ORTHO05D003332 5.5e-15 88.6 702 29.5
vmacro13942 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.2e-15 88.2 400 24.5
Ciclev10004647m.g Citrus clementina HOM05D003520 ORTHO05D003332 9.4e-15 87.8 307 27.7
Haze_08912 Corylus avellana HOM05D003520 ORTHO05D003332 1.6e-14 87.0 110 41.8
Haze_08915 Corylus avellana HOM05D003520 ORTHO05D003332 1.6e-14 87.0 110 41.8
Migut.E01117 Erythranthe guttata HOM05D003520 ORTHO05D003332 2.1e-14 86.7 375 24.5
QL12p017888 Quercus lobata HOM05D003520 ORTHO05D003332 2.1e-14 86.7 874 22.2
Gohir.A12G258600 Gossypium hirsutum HOM05D003520 ORTHO05D003332 2.7e-14 86.3 281 27.4
Ca_17554_v3 Cicer arietinum L. HOM05D003520 ORTHO05D003332 3.6e-14 85.9 273 28.6
Nn6g33544 Nelumbo nucifera HOM05D003520 ORTHO05D003332 4.7e-14 85.5 107 47.7
Lalb_Chr16g0389811 Lupinus albus HOM05D003520 ORTHO05D003332 6.1e-14 85.1 406 31.3
Manes.14G027100 Manihot esculenta HOM05D003520 ORTHO05D003332 6.1e-14 85.1 248 29.4
PGR142G4230 Punica granatum HOM05D003520 ORTHO05D003332 1.0e-13 84.3 108 46.3
FAN18G3894 Fragaria x ananassa HOM05D003520 ORTHO05D003332 1.4e-13 84.0 169 31.4
Haze_13728 Corylus avellana HOM05D003520 ORTHO05D003332 2.3e-13 83.2 242 29.8
Medtr8g096930 Medicago truncatula HOM05D003520 ORTHO05D003332 2.3e-13 83.2 254 43.3
VMungo0464G1159 Vigna mungo HOM05D003520 ORTHO05D003332 3.0e-13 82.8 283 27.2
Nn1g01417 Nelumbo nucifera HOM05D003520 ORTHO05D003332 4.0e-13 82.4 193 41.5
FvH4_5g01860 Fragaria vesca HOM05D003520 ORTHO05D003332 5.2e-13 82.0 169 32.5
arahy.Tifrunner.gnm1.ann1.49TA12 Arachis hypogaea HOM05D003520 ORTHO05D003332 6.7e-13 81.6 695 27.3
TWI60G1121 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.0e-12 80.1 106 42.5
Gorai.008G278300 Gossypium raimondii HOM05D003520 ORTHO05D003332 2.6e-12 79.7 345 26.4
FAN04G1936 Fragaria x ananassa HOM05D003520 ORTHO05D003332 3.3e-12 79.3 169 31.4
AUR62017242 Chenopodium quinoa HOM05D003520 ORTHO05D003332 5.7e-12 78.6 170 30.0
GSVIVG01019812001 Vitis vinifera HOM05D000016 ORTHO05D000109 5.7e-12 78.6 306 28.4
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 9.7e-12 77.8 162 32.7
FAN13G1265 Fragaria x ananassa HOM05D003520 ORTHO05D003332 9.7e-12 77.8 169 30.2
Duzib205G1602 Durio zibethinus HOM05D003520 ORTHO05D003332 1.3e-11 77.4 281 26.7
Thecc.03G174900 Theobroma cacao HOM05D003520 ORTHO05D003332 1.3e-11 77.4 328 30.5
CiPaw.12G096100 Carya illinoinensis HOM05D003520 ORTHO05D003332 2.2e-11 76.6 166 31.9
Cfa008307 Carpinus fangiana HOM05D003520 ORTHO05D003332 2.8e-11 76.3 241 28.6
TWI14G1277 Tripterygium wilfordii HOM05D003520 ORTHO05D003332 2.8e-11 76.3 308 27.6
ATR0680G240 Amborella trichopoda HOM05D003520 ORTHO05D003332 6.3e-11 75.1 164 30.5
CiPaw.04G065200 Carya illinoinensis HOM05D003520 ORTHO05D003332 8.2e-11 74.7 95 44.2
Aqoxy7G00385 Aquilegia oxysepala HOM05D003520 ORTHO05D003332 1.1e-10 74.3 308 27.6
Sabra15G0150800 Salix brachista HOM05D003520 ORTHO05D003332 1.4e-10 73.9 74 45.9
COL.COLO4_14291 Corchorus olitorius HOM05D003520 ORTHO05D003332 1.8e-10 73.6 348 26.4
Phvul.002G287000 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 1.8e-10 73.6 478 33.7
Potri.012G138300 Populus trichocarpa HOM05D003520 ORTHO05D003332 2.4e-10 73.2 102 40.2
Lsat_1_v5_gn_0_29760 Lactuca sativa HOM05D003520 ORTHO05D003332 3.1e-10 72.8 105 38.1
VMungo1215G1122 Vigna mungo HOM05D003520 ORTHO05D003332 3.1e-10 72.8 748 23.5
Glyma.08G012000 Glycine max HOM05D003520 ORTHO05D003332 7.0e-10 71.6 103 40.8
MELO3C005647.2 Cucumis melo HOM05D003520 ORTHO05D003332 9.1e-10 71.2 106 34.9
SEGI_35246 Sequoiadendron giganteum HOM05D004190 ORTHO05D004692 9.1e-10 71.2 76 44.7
VMungo0251G2110 Vigna mungo HOM05D003520 ORTHO05D003332 9.1e-10 71.2 480 32.5
arahy.Tifrunner.gnm1.ann1.D6ZH50 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.2e-09 70.9 246 28.5
Eucgr.K00243 Eucalyptus grandis HOM05D003520 ORTHO05D003332 1.2e-09 70.9 557 23.7
Lsat_1_v5_gn_6_101581 Lactuca sativa HOM05D003520 ORTHO05D003332 1.2e-09 70.9 410 22.4
Sed0005114 Sechium edule HOM05D003520 ORTHO05D003332 1.6e-09 70.5 268 27.6
Oeu048798.1 Olea europaea HOM05D003520 ORTHO05D003332 2.0e-09 70.1 165 30.3
Lj2g0020727 Lotus japonicus HOM05D003520 ORTHO05D003332 3.5e-09 69.3 78 44.9
Phvul.002G155600 Phaseolus vulgaris HOM05D003520 ORTHO05D003332 3.5e-09 69.3 711 24.5
CiPaw.03G105100 Carya illinoinensis HOM05D003520 ORTHO05D003332 4.5e-09 68.9 283 30.4
GSVIVG01010547001 Vitis vinifera HOM05D003520 ORTHO05D003332 4.5e-09 68.9 255 28.6
Lj4g0003069 Lotus japonicus HOM05D003520 ORTHO05D003332 5.9e-09 68.6 147 33.3
Atru.chr1.477_Atru.chr1.478 Acer truncatum HOM05D003520 ORTHO05D003332 7.7e-09 68.2 296 29.1
CAN.G1704.2 Capsicum annuum HOM05D012625 ORTHO05D003332 7.7e-09 68.2 78 42.3
Cc02_g03140 Coffea canephora HOM05D003520 ORTHO05D003332 7.7e-09 68.2 131 32.8
Migut.F00353 Erythranthe guttata HOM05D003520 ORTHO05D003332 7.7e-09 68.2 127 33.1
HanXRQChr15g0495611 Helianthus annuus HOM05D003520 ORTHO05D003332 7.7e-09 68.2 62 46.8
HanXRQChr09g0253501 Helianthus annuus HOM05D003520 ORTHO05D003332 1.0e-08 67.8 71 42.3
Glyma.11G025500 Glycine max HOM05D003520 ORTHO05D003332 1.3e-08 67.4 93 36.6
MBI18_g01149_MAGBIO Magnolia biondii HOM05D003520 ORTHO05D003332 1.3e-08 67.4 164 34.8
Nitab4.5_0001508g0010 Nicotiana tabacum HOM05D012625 ORTHO05D003332 2.9e-08 66.2 62 46.8
CiPaw.04G065400 Carya illinoinensis HOM05D003520 ORTHO05D003332 3.8e-08 65.9 64 48.4
Duzib205G1307 Durio zibethinus HOM05D003520 ORTHO05D003332 5.0e-08 65.5 166 27.1
Peaxi162Scf00915g00037 Petunia axillaris HOM05D012625 ORTHO05D003332 6.5e-08 65.1 73 41.1
Ah.02g116500 Amaranthus hybridus HOM05D003520 ORTHO05D003332 8.5e-08 64.7 50 52.0
Solyc03g025970.3 Solanum lycopersicum HOM05D012625 ORTHO05D003332 8.5e-08 64.7 87 43.7
Sopen03g004790 Solanum pennellii HOM05D012625 ORTHO05D003332 8.5e-08 64.7 87 43.7
PGSC0003DMG400014327 Solanum tuberosum HOM05D012625 ORTHO05D003332 8.5e-08 64.7 78 42.3
arahy.Tifrunner.gnm1.ann1.RT2UP8 Arachis hypogaea HOM05D003520 ORTHO05D003332 1.1e-07 64.3 80 42.5
Potri.015G140100 Populus trichocarpa HOM05D003520 ORTHO05D003332 1.1e-07 64.3 150 30.7
QL09p014562 Quercus lobata HOM05D003520 ORTHO05D003332 1.1e-07 64.3 211 28.9
ClCG05G007960 Citrullus lanatus HOM05D003520 ORTHO05D003332 1.5e-07 63.9 90 40.0
Psat7g035760 Pisum sativum HOM05D003520 ORTHO05D003332 1.5e-07 63.9 102 40.2
Lalb_Chr09g0321101 Lupinus albus HOM05D003520 ORTHO05D003332 1.9e-07 63.5 671 23.5
Zm00001eb171140 Zea mays HOM05D023145 ORTHO05D003332 3.2e-07 62.8 48 62.5
Cpa.g.sc107.38 Carica papaya HOM05D003520 ORTHO05D003332 4.2e-07 62.4 232 28.0
CsaV3_3G017000 Cucumis sativus L. HOM05D003520 ORTHO05D003332 5.5e-07 62.0 281 27.0
Os04g0266400 Oryza sativa ssp. japonica HOM05D003520 ORTHO05D003332 5.5e-07 62.0 119 32.8
TAR636G1398 Trochodendron aralioides HOM05D003520 ORTHO05D003332 7.2e-07 61.6 142 33.1
vmacro13941 Vaccinium macrocarpon HOM05D003520 ORTHO05D003332 7.2e-07 61.6 100 37.0
SEGI_04263 Sequoiadendron giganteum HOM05D016141 ORTHO05D004692 9.4e-07 61.2 48 56.2
Lsat_1_v5_gn_6_86841 Lactuca sativa HOM05D003520 ORTHO05D003332 1.2e-06 60.8 212 25.5
Oeu048797.1 Olea europaea HOM05D003520 ORTHO05D003332 1.2e-06 60.8 331 23.0
Oeu056239.2 Olea europaea HOM05D003520 ORTHO05D003332 1.2e-06 60.8 128 33.6
PSO782G5503 Papaver somniferum HOM05D003520 ORTHO05D003332 2.1e-06 60.1 268 24.3
THA.LOC104800257 Tarenaya hassleriana HOM05D012366 ORTHO05D003332 2.1e-06 60.1 186 28.0
CDE06G0068 Ceratophyllum demersum HOM05D003520 ORTHO05D003332 2.7e-06 59.7 149 32.2
Sc22g0000330 Simmondsia chinensis HOM05D003520 ORTHO05D003332 2.7e-06 59.7 825 21.6
Manes.01G173632 Manihot esculenta HOM05D004190 ORTHO05D004692 3.6e-06 59.3 84 41.7
PSO478G3392 Papaver somniferum HOM05D003520 ORTHO05D003332 3.6e-06 59.3 298 24.2
MD01G1199300 Malus domestica HOM05D003520 ORTHO05D003332 4.7e-06 58.9 316 28.5
Zm00001eb420370 Zea mays HOM05D003520 ORTHO05D003332 4.7e-06 58.9 79 40.5
COL.COLO4_18512 Corchorus olitorius HOM05D004190 ORTHO05D004692 8.0e-06 58.2 104 35.6
Thecc.09G321100 Theobroma cacao HOM05D004190 ORTHO05D004692 8.0e-06 58.2 47 53.2
GSVIVG01024954001 Vitis vinifera HOM05D004190 ORTHO05D004692 8.0e-06 58.2 76 43.4


User provided reference genes

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