Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 2168.7 1084 100.0
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 2065.8 1084 94.9
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 2060.0 1084 94.6
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 2053.1 1084 94.1
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 2026.1 1094 92.4
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1979.5 1080 90.7
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1826.6 1081 85.8
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1746.5 1087 79.0
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1718.4 1079 78.8
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1715.3 1080 78.1
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1699.9 1088 76.7
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1087 76.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1689.1 1078 76.8
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1089 76.2
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1682.9 1092 75.7
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1680.2 1104 76.0
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1677.9 1084 75.5
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.1 1088 76.1
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1673.7 1088 75.9
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1666.7 1073 76.5
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1657.1 1115 73.8
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1652.1 1076 76.4
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1647.1 1076 75.7
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1642.9 1084 74.9
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1642.5 1083 74.6
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1640.6 1083 75.0
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1639.0 1148 71.8
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1637.1 1085 74.9
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1635.2 1080 74.7
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1633.2 1087 74.4
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1630.2 1078 74.6
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1628.2 1076 75.2
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1627.8 1092 73.4
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1625.5 1091 73.8
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1624.8 1074 74.7
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1619.8 1079 74.8
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1616.7 1085 73.5
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1614.4 1086 73.3
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1080 74.0
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1088 73.7
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1610.1 1087 72.9
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1609.3 1093 72.6
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1607.0 1091 74.1
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1606.3 1084 73.3
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1604.7 1081 72.8
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1604.0 1080 72.5
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1595.9 1083 72.4
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1593.6 1083 72.2
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1081 73.0
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1084 72.6
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1585.1 1083 71.3
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1073 73.3
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1583.9 1073 72.7
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1582.8 1093 72.2
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1086 71.9
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1578.5 1085 71.5
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1575.8 1165 68.8
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1575.5 1083 71.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1575.1 1081 71.9
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1573.9 1103 70.6
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1573.5 1084 71.7
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1572.0 1081 71.7
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1073 72.4
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1073 72.0
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1109 72.2
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1570.1 1074 71.6
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1568.9 1165 68.6
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1567.7 1083 70.8
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1073 72.1
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1566.6 1083 71.0
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1081 71.5
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1083 70.8
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1105 70.3
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1565.1 1076 71.0
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1562.4 1084 72.1
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1081 70.3
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1558.5 1081 70.3
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1553.5 1084 72.0
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1549.3 1015 75.1
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1548.1 991 76.5
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1547.3 1073 71.9
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1542.7 1075 70.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1539.6 1076 70.7
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1529.2 1078 71.2
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1528.1 1078 69.9
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1523.8 1078 70.8
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1522.7 1081 69.5
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1521.9 1078 70.6
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1078 70.5
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1519.6 1094 69.6
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1519.2 1078 70.5
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1076 69.6
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1078 70.3
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1518.4 1069 70.7
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1518.1 1078 70.4
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 1078 70.3
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 1078 70.3
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1515.7 1079 69.8
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1510.7 1078 69.9
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1509.6 1078 70.3
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1508.0 1079 69.6
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1488.4 1083 68.8
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1482.2 1050 69.7
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1481.1 1100 66.8
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1478.8 1105 67.0
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1473.0 1074 66.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1455.7 995 72.9
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1437.6 980 73.1
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1428.7 1095 64.3
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1384.4 1082 66.0
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1344.3 1080 64.7
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1233.8 790 76.7
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1197.6 697 84.9
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1177.9 1084 53.7
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1166.8 1079 54.5
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1157.5 1126 51.7
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1144.4 678 82.9
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 717 79.2
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1129.8 1078 52.7
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1128.2 752 74.3
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1125.5 1074 52.7
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 1.8e-292 1009.6 836 60.6
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 8.5e-274 947.6 816 60.3
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.9e-263 912.1 612 74.8
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 4.1e-252 875.5 951 48.4
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 4.2e-249 865.5 635 71.3
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.8e-247 860.1 503 83.9
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.4e-220 770.8 631 61.3
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 8.0e-216 755.0 987 46.5
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 4.7e-200 702.6 609 60.8
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 9.3e-164 582.0 447 66.4
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 8.8e-154 548.9 311 83.3
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 2.5e-132 477.6 383 63.4
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.0e-130 472.2 313 73.8
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 6.4e-72 276.9 292 51.4
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 5.6e-68 263.8 243 55.6
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 8.4e-64 250.0 205 63.4
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 7.9e-62 243.4 136 80.1
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 1.5e-52 212.6 137 70.8
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 2.8e-35 155.2 160 53.8
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 7.7e-33 147.1 133 55.6
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 2.7e-30 138.7 156 48.7
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 3.9e-29 134.8 72 84.7
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 1.8e-26 125.9 108 56.5
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.7e-24 119.4 97 63.9
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 9.4e-23 113.6 88 63.6
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 3.6e-14 85.1 83 44.6
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 8.8e-13 80.5 49 69.4
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 8.3e-11 73.9 48 72.9
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 3.5e-09 68.6 33 93.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 2.9e-08 65.5 147 32.7
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 39 74.4


User provided reference genes

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