Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 1.0e-208 729.9 398 100.0
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 1.8e-176 622.9 363 93.9
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 8.7e-176 620.5 363 93.7
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.9e-162 576.2 367 86.9
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.2e-161 573.5 367 86.4
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 9.7e-151 537.3 364 82.4
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 3.6e-145 518.8 363 77.1
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.1e-143 513.8 363 77.1
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 4.8e-142 508.4 363 77.7
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 7.0e-141 504.6 363 75.5
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 9.1e-141 504.2 362 75.7
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 2.0e-140 503.1 363 75.8
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 2.0e-140 503.1 363 75.2
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 1.3e-139 500.4 363 74.9
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 6.5e-139 498.0 357 75.4
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 8.5e-139 497.7 363 74.4
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.2e-138 495.7 363 73.8
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 3.2e-138 495.7 393 70.5
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 7.2e-138 494.6 363 75.5
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 1.6e-137 493.4 363 73.6
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 2.1e-137 493.0 361 73.4
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 3.6e-137 492.3 363 73.8
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 3.6e-137 492.3 363 74.7
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 6.1e-137 491.5 363 74.4
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 8.8e-136 487.6 363 73.6
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.5e-135 486.9 363 72.7
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 1.5e-135 486.9 363 73.6
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 7.4e-135 484.6 364 72.8
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 4.1e-133 478.8 368 71.2
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 1.2e-132 477.2 363 73.0
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 4.2e-130 468.8 363 70.8
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 4.2e-130 468.8 363 70.8
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 4.2e-130 468.8 477 58.7
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 4.2e-130 468.8 375 67.7
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 5.5e-130 468.4 365 72.1
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 5.5e-130 468.4 363 71.9
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 1.2e-129 467.2 363 72.7
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 2.7e-129 466.1 357 72.3
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 3.6e-129 465.7 361 70.1
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 6.1e-129 464.9 361 69.8
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 1.4e-128 463.8 363 71.3
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 4.0e-128 462.2 363 71.6
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 6.8e-128 461.5 363 71.9
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 6.8e-128 461.5 363 71.6
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 2.0e-127 459.9 363 70.2
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 2.6e-127 459.5 363 69.7
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 1.3e-126 457.2 363 69.1
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 1.3e-126 457.2 363 71.1
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 1.7e-126 456.8 424 62.5
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 2.2e-126 456.4 361 69.3
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 2.2e-126 456.4 361 69.3
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 2.8e-126 456.1 363 69.7
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 2.8e-126 456.1 393 66.7
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 4.8e-126 455.3 361 68.4
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 4.8e-126 455.3 363 71.6
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 2.4e-125 453.0 361 68.7
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 3.1e-125 452.6 452 59.5
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 9.1e-125 451.1 361 68.4
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 9.1e-125 451.1 361 68.4
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 9.1e-125 451.1 361 68.4
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 2.0e-124 449.9 297 79.1
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 7.7e-124 448.0 361 67.9
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 1.3e-123 447.2 333 72.7
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 2.9e-123 446.0 361 67.3
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.8e-123 445.7 363 68.6
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 5.0e-123 445.3 359 67.4
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 1.5e-122 443.7 363 68.0
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.6e-121 440.3 363 68.3
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 1.6e-121 440.3 394 64.2
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 2.1e-121 439.9 361 67.9
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 2.7e-121 439.5 361 68.4
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 3.0e-120 436.0 346 68.5
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.2e-120 435.3 363 66.9
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 3.4e-119 432.6 361 65.7
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 7.5e-119 431.4 344 70.9
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 1.7e-118 430.3 362 66.0
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 1.8e-117 426.8 361 65.4
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.6e-116 423.7 363 66.1
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 1.1e-114 417.5 334 69.2
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 1.9e-114 416.8 334 71.0
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 1.6e-113 413.7 363 65.8
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 3.6e-113 412.5 358 63.4
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 8.0e-113 411.4 363 65.0
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.0e-112 411.0 277 78.0
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 8.3e-110 401.4 336 68.2
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 1.4e-109 400.6 363 64.2
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.3e-107 394.0 333 66.4
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.1e-105 386.7 391 59.1
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 5.2e-104 382.1 367 58.6
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 2.6e-103 379.8 355 60.0
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.9e-101 373.6 424 56.6
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 3.3e-98 362.8 301 69.4
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 2.3e-96 356.7 357 58.0
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 1.1e-90 337.8 363 54.8
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 4.3e-90 335.9 335 60.3
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.4e-79 299.7 346 54.9
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 4.2e-61 239.6 225 64.0
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 2.0e-47 194.1 374 35.0
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 5.1e-43 179.5 379 34.0
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 1.9e-37 161.0 229 50.7
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 1.6e-36 157.9 344 31.4
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.0e-35 155.2 378 31.0
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 8.8e-35 152.1 137 61.3
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 5.7e-34 149.4 384 31.2
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 8.5e-30 135.6 156 57.1
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 3.9e-27 126.7 181 45.3
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.1e-26 125.2 84 70.2
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.0e-22 112.1 110 55.5
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 8.2e-17 92.4 159 37.7
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 1.8e-16 91.3 105 53.3
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.7e-15 87.4 94 54.3
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 1.3e-14 85.1 447 24.6
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 4.2e-13 80.1 54 79.6
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 9.4e-13 79.0 118 37.3
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 1.8e-11 74.7 63 61.9
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 2.3e-11 74.3 58 67.2
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 3.0e-11 73.9 93 57.0
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 9.8e-10 68.9 63 66.7
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 1.4e-08 65.1 67 59.7
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 2.4e-08 64.3 66 59.1
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 4.5e-07 60.1 60 56.7
SEGI_32656 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 4.5e-07 60.1 121 36.4
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.7e-06 58.2 41 73.2
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 8.5e-06 55.8 61 47.5


User provided reference genes

Program Settings