Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G852.8 Capsicum annuum HOM05D003493 ORTHO05D003980 5.7e-121 437.6 218 100.0
CAN.G852.10 Capsicum annuum HOM05D003112 ORTHO05D043435 4.5e-25 119.0 175 46.3
CAN.G14.48 Capsicum annuum HOM05D003493 ORTHO05D003980 2.1e-22 110.2 67 80.6
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 2.0e-20 103.6 74 71.6
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 2.0e-20 103.6 74 71.6
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 7.4e-20 101.7 74 70.3
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 2.2e-19 100.1 77 67.5
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 9.1e-18 94.7 74 66.2
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 3.8e-16 89.4 147 42.2
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 4.2e-15 85.9 77 55.8
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 2.1e-14 83.6 77 59.7
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.6e-14 82.8 74 58.1
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 1.4e-13 80.9 71 60.6
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.7e-13 78.6 77 54.5
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 6.7e-13 78.6 77 53.2
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.2e-12 77.8 77 54.5
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 1.5e-12 77.4 64 56.2
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 2.0e-12 77.0 77 51.9
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 2.0e-12 77.0 77 51.9
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 2.0e-12 77.0 77 51.9
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.6e-12 76.6 74 56.8
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 2.6e-12 76.6 84 51.2
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 3.3e-12 76.3 61 63.9
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.3e-12 76.3 77 53.2
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 5.7e-12 75.5 77 50.6
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 7.5e-12 75.1 77 50.6
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.7e-11 73.9 74 54.1
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 2.8e-11 73.2 121 42.1
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 3.7e-11 72.8 80 51.2
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 3.7e-11 72.8 75 52.0
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 3.7e-11 72.8 75 52.0
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 4.8e-11 72.4 63 58.7
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 6.3e-11 72.0 90 48.9
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 6.3e-11 72.0 73 54.8
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 6.3e-11 72.0 77 50.6
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 6.3e-11 72.0 77 50.6
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.4e-10 70.9 75 50.7
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 1.4e-10 70.9 72 52.8
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 2.4e-10 70.1 90 47.8
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 2.4e-10 70.1 93 44.1
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 2.4e-10 70.1 87 49.4
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 4.1e-10 69.3 74 52.7
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 4.1e-10 69.3 72 51.4
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 4.1e-10 69.3 97 48.5
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 4.1e-10 69.3 74 52.7
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 4.1e-10 69.3 75 49.3
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 5.3e-10 68.9 87 50.6
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 7.0e-10 68.6 64 57.8
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 9.1e-10 68.2 77 48.1
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 1.2e-09 67.8 80 45.0
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 1.6e-09 67.4 70 50.0
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 2.7e-09 66.6 69 52.2
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 2.7e-09 66.6 68 50.0
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 2.7e-09 66.6 77 49.4
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 2.7e-09 66.6 69 53.6
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 3.5e-09 66.2 68 50.0
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 3.5e-09 66.2 80 43.8
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 3.5e-09 66.2 64 54.7
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 4.5e-09 65.9 68 50.0
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 4.5e-09 65.9 66 56.1
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 7.7e-09 65.1 74 48.6
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 7.7e-09 65.1 71 46.5
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.0e-08 64.7 77 41.6
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 1.3e-08 64.3 77 44.2
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 1.3e-08 64.3 65 53.8
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 1.3e-08 64.3 77 44.2
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 1.3e-08 64.3 66 54.5
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 1.7e-08 63.9 65 52.3
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 1.7e-08 63.9 68 51.5
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 1.7e-08 63.9 61 50.8
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 2.2e-08 63.5 67 44.8
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 2.2e-08 63.5 78 43.6
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 2.2e-08 63.5 76 46.1
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 2.2e-08 63.5 53 58.5
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 2.2e-08 63.5 64 53.1
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 2.9e-08 63.2 77 44.2
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 2.9e-08 63.2 63 50.8
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.9e-08 63.2 66 56.1
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.9e-08 63.2 66 56.1
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.9e-08 63.2 66 56.1
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 3.8e-08 62.8 74 45.9
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 3.8e-08 62.8 65 52.3
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 5.0e-08 62.4 87 47.1
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 6.5e-08 62.0 71 45.1
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 6.5e-08 62.0 71 45.1
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 6.5e-08 62.0 74 45.9
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 8.5e-08 61.6 84 41.7
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 8.5e-08 61.6 53 56.6
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 8.5e-08 61.6 61 57.4
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 8.5e-08 61.6 75 46.7
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.1e-07 61.2 58 55.2
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 1.5e-07 60.8 113 37.2
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 1.5e-07 60.8 67 47.8
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 1.9e-07 60.5 66 51.5
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 1.9e-07 60.5 94 41.5
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 1.9e-07 60.5 94 41.5
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 1.9e-07 60.5 94 41.5
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.9e-07 60.5 94 41.5
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 1.9e-07 60.5 67 46.3
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 1.9e-07 60.5 67 47.8
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 1.9e-07 60.5 74 44.6
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.5e-07 60.1 76 47.4
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 2.5e-07 60.1 73 49.3
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 4.2e-07 59.3 67 49.3
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 4.2e-07 59.3 94 43.6
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 5.5e-07 58.9 95 40.0
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 5.5e-07 58.9 74 47.3
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 7.2e-07 58.5 94 40.4
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 7.2e-07 58.5 49 57.1
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 9.4e-07 58.2 54 53.7
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 9.4e-07 58.2 62 50.0
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 9.4e-07 58.2 62 50.0
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 9.4e-07 58.2 62 50.0
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 9.4e-07 58.2 99 42.4
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 9.4e-07 58.2 81 43.2
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 1.2e-06 57.8 60 50.0
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.2e-06 57.8 65 52.3
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 1.2e-06 57.8 74 45.9
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.2e-06 57.8 67 43.3
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 1.6e-06 57.4 70 42.9
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 2.1e-06 57.0 74 45.9
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 2.1e-06 57.0 73 49.3
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 2.1e-06 57.0 73 43.8
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 2.7e-06 56.6 64 43.8
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 3.6e-06 56.2 47 61.7
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 3.6e-06 56.2 58 48.3
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 4.7e-06 55.8 49 57.1
Nitab4.5_0001221g0040 Nicotiana tabacum HOM05D000654 ORTHO05D002711 4.7e-06 55.8 65 52.3
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 4.7e-06 55.8 79 41.8
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 6.1e-06 55.5 94 42.6
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 6.1e-06 55.5 66 51.5
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 8.0e-06 55.1 57 52.6


User provided reference genes

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