Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G852.4 Capsicum annuum HOM05D003470 ORTHO05D004157 1.5e-95 352.8 172 100.0
Nitab4.5_0003906g0030 Nicotiana tabacum HOM05D003470 ORTHO05D004157 9.7e-15 84.3 94 52.1
Nitab4.5_0004731g0020 Nicotiana tabacum HOM05D003470 ORTHO05D004157 1.3e-14 84.0 95 53.7
CAN.G1038.4 Capsicum annuum HOM05D003470 ORTHO05D004157 1.7e-14 83.6 85 58.8
Sopen09g003360 Solanum pennellii HOM05D003470 ORTHO05D004157 4.8e-14 82.0 87 56.3
MSTRG.19203 Avicennia marina HOM05D003470 ORTHO05D004157 6.3e-14 81.6 112 45.5
SalBow3G0781 Salvia bowleyana HOM05D003470 ORTHO05D004157 6.3e-14 81.6 91 51.6
Peaxi162Scf00138g00213 Petunia axillaris HOM05D003470 ORTHO05D004157 8.2e-14 81.3 90 53.3
Solyc09g008530.3 Solanum lycopersicum HOM05D003470 ORTHO05D004157 8.2e-14 81.3 53 79.2
PGSC0003DMG400003903 Solanum tuberosum HOM05D003470 ORTHO05D004157 8.2e-14 81.3 53 79.2
Dinv37350 Davidia involucrata HOM05D003470 ORTHO05D004157 1.2e-12 77.4 53 71.7
CSS0007947 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 5.9e-12 75.1 53 69.8
CSS0012208 Camellia sinensis var. sinensis HOM05D003470 ORTHO05D004157 5.9e-12 75.1 53 69.8
Actinidia26639 Actinidia chinensis HOM05D003470 ORTHO05D004157 7.7e-12 74.7 53 67.9
DCAR_015016 Daucus carota HOM05D005722 ORTHO05D007934 7.7e-12 74.7 71 56.3
Actinidia28930 Actinidia chinensis HOM05D003470 ORTHO05D004157 8.5e-11 71.2 53 67.9
HanXRQChr13g0400491 Helianthus annuus HOM05D003470 ORTHO05D004157 1.1e-10 70.9 123 39.0
GSVIVG01033709001 Vitis vinifera HOM05D003470 ORTHO05D004157 1.1e-10 70.9 53 66.0
Migut.J00469 Erythranthe guttata HOM05D003470 ORTHO05D004157 2.5e-10 69.7 50 68.0
ECA233G0686 Erigeron canadensis HOM05D003470 ORTHO05D004157 4.2e-10 68.9 62 58.1
FAN05G3818 Fragaria x ananassa HOM05D003470 ORTHO05D004157 4.2e-10 68.9 85 51.8
Sabra06G0094700 Salix brachista HOM05D003470 ORTHO05D004157 4.2e-10 68.9 112 37.5
Lsat_1_v5_gn_6_28040 Lactuca sativa HOM05D003470 ORTHO05D004157 5.5e-10 68.6 51 66.7
FAN05G4328 Fragaria x ananassa HOM05D003470 ORTHO05D004157 9.4e-10 67.8 85 50.6
Potri.006G120400 Populus trichocarpa HOM05D003470 ORTHO05D004157 9.4e-10 67.8 112 39.3
FvH4_6g17113 Fragaria vesca HOM05D003470 ORTHO05D004157 1.2e-09 67.4 85 50.6
FAN14G5641 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.2e-09 67.4 85 50.6
TAR633G0390 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.6e-09 67.0 46 69.6
Cc06_g04710 Coffea canephora HOM05D003470 ORTHO05D004157 2.1e-09 66.6 103 45.6
MD14G1098000 Malus domestica HOM05D003470 ORTHO05D004157 3.6e-09 65.9 53 64.2
Manes.08G016800 Manihot esculenta HOM05D003470 ORTHO05D004157 3.6e-09 65.9 90 45.6
CiPaw.09G004500 Carya illinoinensis HOM05D003470 ORTHO05D004157 4.7e-09 65.5 49 65.3
CiPaw.10G002200 Carya illinoinensis HOM05D003470 ORTHO05D004157 4.7e-09 65.5 49 65.3
Haze_19469 Corylus avellana HOM05D003470 ORTHO05D004157 4.7e-09 65.5 105 38.1
MD12G1103600 Malus domestica HOM05D003470 ORTHO05D004157 4.7e-09 65.5 48 70.8
RcHm_v2.0_Chr3g0471201 Rosa chinensis HOM05D003470 ORTHO05D004157 6.1e-09 65.1 48 70.8
HanXRQChr07g0186251 Helianthus annuus HOM05D003470 ORTHO05D004157 8.0e-09 64.7 65 52.3
FAN09G0366 Fragaria x ananassa HOM05D003470 ORTHO05D004157 1.4e-08 63.9 49 67.3
Prupe.7G123700 Prunus persica HOM05D003470 ORTHO05D004157 1.4e-08 63.9 48 68.8
TAR369G0811 Trochodendron aralioides HOM05D003470 ORTHO05D004157 1.8e-08 63.5 53 58.5
Oeu026700.1 Olea europaea HOM05D003470 ORTHO05D004157 3.0e-08 62.8 93 45.2
Eucgr.A01601 Eucalyptus grandis HOM05D003470 ORTHO05D004157 3.9e-08 62.4 46 65.2
TWI74G0295 Tripterygium wilfordii HOM05D003470 ORTHO05D004157 3.9e-08 62.4 45 66.7
TAR623G0591 Trochodendron aralioides HOM05D003470 ORTHO05D004157 3.9e-08 62.4 46 69.6
vmacro07330 Vaccinium macrocarpon HOM05D003470 ORTHO05D004157 3.9e-08 62.4 48 62.5
Gohir.D09G139800 Gossypium hirsutum HOM05D003470 ORTHO05D004157 5.2e-08 62.0 77 50.6
COL.COLO4_22242 Corchorus olitorius HOM05D003470 ORTHO05D004157 6.7e-08 61.6 83 44.6
Dinv31268 Davidia involucrata HOM05D003470 ORTHO05D004157 6.7e-08 61.6 88 44.3
Rhsim03G0087000 Rhododendron simsii HOM05D003470 ORTHO05D004157 6.7e-08 61.6 79 45.6
Duzib093G1940 Durio zibethinus HOM05D003470 ORTHO05D004157 8.8e-08 61.2 48 64.6
QL07p041535 Quercus lobata HOM05D003470 ORTHO05D004157 8.8e-08 61.2 49 61.2
Gorai.006G160300 Gossypium raimondii HOM05D003470 ORTHO05D004157 1.1e-07 60.8 77 49.4
Nn2g13883 Nelumbo nucifera HOM05D003470 ORTHO05D004157 1.1e-07 60.8 67 46.3
Sc20g0001480 Simmondsia chinensis HOM05D003470 ORTHO05D004157 2.0e-07 60.1 107 35.5
Aqoxy1G01047 Aquilegia oxysepala HOM05D003470 ORTHO05D004157 2.6e-07 59.7 45 62.2
Lj3C994T12 Lonicera japonica HOM05D003470 ORTHO05D004157 2.6e-07 59.7 53 58.5
Lj5g0020068 Lotus japonicus HOM05D003470 ORTHO05D004157 2.6e-07 59.7 74 51.4
Thecc.10G090100 Theobroma cacao HOM05D003470 ORTHO05D004157 3.3e-07 59.3 71 49.3
Glyma.13G147300 Glycine max HOM05D003470 ORTHO05D004157 4.4e-07 58.9 47 66.0
Thecc.05G074600 Theobroma cacao HOM05D003470 ORTHO05D004157 4.4e-07 58.9 40 75.0
Glyma.10G062800 Glycine max HOM05D003470 ORTHO05D004157 7.4e-07 58.2 47 66.0
Atru.chr8.1716 Acer truncatum HOM05D003470 ORTHO05D004157 9.7e-07 57.8 48 58.3
Actinidia18557 Actinidia chinensis HOM05D003470 ORTHO05D004157 1.3e-06 57.4 83 43.4
Gohir.D10G208000 Gossypium hirsutum HOM05D003470 ORTHO05D004157 1.3e-06 57.4 51 56.9
Gorai.011G233700 Gossypium raimondii HOM05D003470 ORTHO05D004157 1.3e-06 57.4 51 56.9
arahy.Tifrunner.gnm1.ann1.8W3QW7 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.7e-06 57.0 71 52.1
arahy.Tifrunner.gnm1.ann1.FKX1H2 Arachis hypogaea HOM05D003470 ORTHO05D004157 1.7e-06 57.0 71 52.1
Manes.10G053000 Manihot esculenta HOM05D003470 ORTHO05D004157 1.7e-06 57.0 53 54.7
Nn6g35185 Nelumbo nucifera HOM05D003470 ORTHO05D004157 1.7e-06 57.0 103 33.0
Sc06g0002130 Simmondsia chinensis HOM05D003470 ORTHO05D004157 2.2e-06 56.6 62 51.6
VMungo0720G2647 Vigna mungo HOM05D003470 ORTHO05D000001 2.2e-06 56.6 42 66.7
Duzib106G0260 Durio zibethinus HOM05D003470 ORTHO05D004157 2.8e-06 56.2 61 50.8
Gohir.A10G200100 Gossypium hirsutum HOM05D003470 ORTHO05D004157 2.8e-06 56.2 51 54.9
Duzib128G1576 Durio zibethinus HOM05D003470 ORTHO05D004157 3.7e-06 55.8 46 63.0
TPR.G22446 Trifolium pratense HOM05D003470 ORTHO05D004157 3.7e-06 55.8 52 59.6
Atru.chr12.917 Acer truncatum HOM05D003470 ORTHO05D004157 4.8e-06 55.5 45 57.8
Gohir.A09G143900 Gossypium hirsutum HOM05D003470 ORTHO05D004157 4.8e-06 55.5 77 49.4
PSO063G0006 Papaver somniferum HOM05D003470 ORTHO05D004157 4.8e-06 55.5 40 65.0
Hund06764 Selenicereus undatus HOM05D003470 ORTHO05D004157 4.8e-06 55.5 98 38.8
Ciclev10033678m.g Citrus clementina HOM05D003470 ORTHO05D004157 6.3e-06 55.1 71 43.7
SGA_v2.0_scaffold40G15455 Striga asiatica HOM05D003470 ORTHO05D003317 6.3e-06 55.1 132 34.1
CANSAT78G0551 Cannabis sativa HOM05D003470 ORTHO05D004157 8.2e-06 54.7 80 41.2
Duzib114G1051 Durio zibethinus HOM05D003470 ORTHO05D004157 8.2e-06 54.7 75 44.0
PSO339G3515 Papaver somniferum HOM05D003470 ORTHO05D004157 8.2e-06 54.7 45 57.8
Rhsim03G0111500 Rhododendron simsii HOM05D003470 ORTHO05D004157 8.2e-06 54.7 67 46.3


User provided reference genes

Program Settings