Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G852.1 Capsicum annuum HOM05D006302 ORTHO05D007960 1.4e-82 309.7 173 100.0
CAN.G637.21 Capsicum annuum HOM05D006302 ORTHO05D007960 4.3e-39 165.2 94 84.0
Solyc03g098160.3 Solanum lycopersicum HOM05D006302 ORTHO05D007960 2.8e-30 136.0 95 70.5
Nitab4.5_0001180g0010 Nicotiana tabacum HOM05D006302 ORTHO05D007960 4.8e-30 135.2 155 57.4
Nitab4.5_0005200g0040 Nicotiana tabacum HOM05D006302 ORTHO05D007960 6.3e-30 134.8 140 64.3
Sopen03g028860 Solanum pennellii HOM05D006302 ORTHO05D007960 6.3e-30 134.8 156 60.9
SalBow5G5149 Salvia bowleyana HOM05D006302 ORTHO05D007960 1.0e-19 100.9 90 55.6
SalBow5G5312 Salvia bowleyana HOM05D006302 ORTHO05D007960 1.0e-19 100.9 90 55.6
Cc04_g09070 Coffea canephora HOM05D006302 ORTHO05D007960 1.1e-18 97.4 96 57.3
Dinv19314 Davidia involucrata HOM05D006302 ORTHO05D007960 1.5e-18 97.1 90 54.4
MSTRG.23195 Avicennia marina HOM05D006302 ORTHO05D007960 2.5e-18 96.3 94 53.2
Rhsim09G0028600 Rhododendron simsii HOM05D006302 ORTHO05D007960 9.4e-18 94.4 86 59.3
Oeu060652.1 Olea europaea HOM05D006302 ORTHO05D007960 1.6e-17 93.6 90 50.0
Migut.O00235 Erythranthe guttata HOM05D006302 ORTHO05D007960 2.1e-17 93.2 90 53.3
Lsat_1_v5_gn_2_15380 Lactuca sativa HOM05D006302 ORTHO05D007960 3.6e-17 92.4 94 52.1
Actinidia34644 Actinidia chinensis HOM05D006302 ORTHO05D007960 1.0e-16 90.9 87 55.2
ECA238G1211 Erigeron canadensis HOM05D006302 ORTHO05D007960 5.2e-16 88.6 88 53.4
CSS0040809 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 6.8e-16 88.2 91 51.6
TAR629G0371 Trochodendron aralioides HOM05D006302 ORTHO05D007960 1.5e-15 87.0 85 55.3
vmacro22676 Vaccinium macrocarpon HOM05D006302 ORTHO05D007960 3.4e-15 85.9 85 54.1
unitig_22.g5442 Utricularia gibba HOM05D006302 ORTHO05D007960 5.7e-15 85.1 90 51.1
Eucgr.H00592 Eucalyptus grandis HOM05D006302 ORTHO05D007960 1.3e-14 84.0 83 53.0
ClCG01G014910 Citrullus lanatus HOM05D006302 ORTHO05D007960 2.8e-14 82.8 85 49.4
DCAR_010206 Daucus carota HOM05D006302 ORTHO05D007960 4.8e-14 82.0 89 49.4
HanXRQChr01g0002621 Helianthus annuus HOM05D006302 ORTHO05D007960 4.8e-14 82.0 85 50.6
MELO3C002158.2 Cucumis melo HOM05D006302 ORTHO05D007960 1.4e-13 80.5 85 48.2
CsaV3_1G007420 Cucumis sativus L. HOM05D006302 ORTHO05D007960 1.4e-13 80.5 85 48.2
Lalb_Chr14g0370421 Lupinus albus HOM05D006302 ORTHO05D007960 5.4e-13 78.6 97 46.4
PGR083G1118 Punica granatum HOM05D006302 ORTHO05D007960 5.4e-13 78.6 83 53.0
VMungo0464G0980 Vigna mungo HOM05D006302 ORTHO05D007960 5.4e-13 78.6 85 51.8
Manes.06G000900 Manihot esculenta HOM05D006302 ORTHO05D007960 7.0e-13 78.2 84 48.8
Nn4g24592 Nelumbo nucifera HOM05D006302 ORTHO05D007960 7.0e-13 78.2 85 52.9
Sed0020457 Sechium edule HOM05D006302 ORTHO05D007960 7.0e-13 78.2 85 48.2
TPR.G28992 Trifolium pratense HOM05D006302 ORTHO05D007960 7.0e-13 78.2 85 49.4
HPP92_002770 Vanilla planifolia HOM05D006302 ORTHO05D007960 7.0e-13 78.2 85 49.4
Ca_23670_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 9.1e-13 77.8 99 45.5
Ca_26696_v3 Cicer arietinum L. HOM05D006302 ORTHO05D007960 9.1e-13 77.8 99 45.5
Prupe.5G239800 Prunus persica HOM05D006302 ORTHO05D007960 9.1e-13 77.8 83 48.2
Haze_18958 Corylus avellana HOM05D006302 ORTHO05D007960 1.6e-12 77.0 85 47.1
Peaxi162Scf00171g00631 Petunia axillaris HOM05D006302 ORTHO05D007960 2.0e-12 76.6 97 43.3
Psat1g124600 Pisum sativum HOM05D006302 ORTHO05D007960 2.0e-12 76.6 85 49.4
Potri.015G033300 Populus trichocarpa HOM05D006302 ORTHO05D007960 2.0e-12 76.6 82 48.8
MD14G1242200 Malus domestica HOM05D006302 ORTHO05D007960 3.5e-12 75.9 85 47.1
arahy.Tifrunner.gnm1.ann1.2W4JQ8 Arachis hypogaea HOM05D006302 ORTHO05D007960 4.5e-12 75.5 86 47.7
Lj2g0026336 Lotus japonicus HOM05D006302 ORTHO05D007960 5.9e-12 75.1 85 47.1
Phvul.004G145200 Phaseolus vulgaris HOM05D006302 ORTHO05D007960 7.7e-12 74.7 85 50.6
Sabra15G0027400 Salix brachista HOM05D006302 ORTHO05D007960 7.7e-12 74.7 82 47.6
Zm00001eb256430 Zea mays HOM05D006302 ORTHO05D007960 7.7e-12 74.7 87 43.7
COL.COLO4_09239 Corchorus olitorius HOM05D006302 ORTHO05D007960 1.0e-11 74.3 74 51.4
Thecc.03G067700 Theobroma cacao HOM05D006302 ORTHO05D007960 1.0e-11 74.3 74 51.4
EL10Ac8g19491 Beta vulgaris HOM05D006302 ORTHO05D007960 1.3e-11 73.9 85 43.5
CiPaw.15G150000 Carya illinoinensis HOM05D006302 ORTHO05D007960 1.3e-11 73.9 82 47.6
Glyma.16G219200 Glycine max HOM05D006302 ORTHO05D007960 1.3e-11 73.9 84 48.8
Medtr4g016590 Medicago truncatula HOM05D006302 ORTHO05D007960 2.2e-11 73.2 99 44.4
PSO063G0294 Papaver somniferum HOM05D006302 ORTHO05D007960 2.2e-11 73.2 82 51.2
Sc10g0008950 Simmondsia chinensis HOM05D006302 ORTHO05D007960 2.2e-11 73.2 94 43.6
AUR62034018 Chenopodium quinoa HOM05D006302 ORTHO05D007960 2.9e-11 72.8 84 41.7
Os02g0772500 Oryza sativa ssp. japonica HOM05D006302 ORTHO05D007960 2.9e-11 72.8 90 43.3
GSVIVG01012939001 Vitis vinifera HOM05D006302 ORTHO05D007960 1.1e-10 70.9 86 47.7
ATR0598G116 Amborella trichopoda HOM05D006302 ORTHO05D007960 2.5e-10 69.7 86 39.5
Gorai.005G134900 Gossypium raimondii HOM05D006302 ORTHO05D007960 2.5e-10 69.7 74 48.6
FvH4_5g17940 Fragaria vesca HOM05D006302 ORTHO05D007960 3.2e-10 69.3 85 43.5
FAN18G4444 Fragaria x ananassa HOM05D006302 ORTHO05D007960 3.2e-10 69.3 85 43.5
Gohir.D02G118900 Gossypium hirsutum HOM05D006302 ORTHO05D007960 5.5e-10 68.6 74 47.3
CDE07G1110 Ceratophyllum demersum HOM05D006302 ORTHO05D007960 7.2e-10 68.2 84 42.9
Gohir.A03G090800 Gossypium hirsutum HOM05D006302 ORTHO05D007960 7.2e-10 68.2 74 47.3
TWI81G1078 Tripterygium wilfordii HOM05D006302 ORTHO05D007960 7.2e-10 68.2 91 42.9
FAN13G0246 Fragaria x ananassa HOM05D006302 ORTHO05D007960 9.4e-10 67.8 85 42.4
QL10p033145 Quercus lobata HOM05D006302 ORTHO05D007960 9.4e-10 67.8 88 47.7
RcHm_v2.0_Chr7g0177661 Rosa chinensis HOM05D006302 ORTHO05D007960 1.6e-09 67.0 85 43.5
SEGI_33145 Sequoiadendron giganteum HOM05D006302 ORTHO05D007960 2.1e-09 66.6 75 45.3
FAN08G1906 Fragaria x ananassa HOM05D006302 ORTHO05D007960 2.7e-09 66.2 85 43.5
Aa31LG8G4630 Aethionema arabicum HOM05D006302 ORTHO05D007960 6.1e-09 65.1 85 42.4
SGA_v2.0_scaffold90G27777 Striga asiatica HOM05D006302 ORTHO05D007960 1.4e-08 63.9 118 37.3
FAN04G1871 Fragaria x ananassa HOM05D006302 ORTHO05D007960 1.8e-08 63.5 80 42.5
CSS0030577 Camellia sinensis var. sinensis HOM05D006302 ORTHO05D007960 5.2e-08 62.0 88 40.9
arahy.Tifrunner.gnm1.ann1.YU9TRY Arachis hypogaea HOM05D006302 ORTHO05D007960 1.5e-07 60.5 122 34.4
Atru.chr9.205 Acer truncatum HOM05D006302 ORTHO05D007960 3.4e-07 59.3 68 45.6
AagrBONN_evm.TU.Sc2ySwM_362.1719 Anthoceros agrestis HOM05D006302 ORTHO05D007960 4.4e-07 58.9 46 58.7
Ciclev10018592m.g Citrus clementina HOM05D006302 ORTHO05D007960 4.4e-07 58.9 69 42.0
C05p48650 Brassica napus HOM05D006302 ORTHO05D007960 7.5e-07 58.2 68 44.1
BolC5t33600H Brassica oleracea HOM05D006302 ORTHO05D007960 7.5e-07 58.2 68 44.1
Duzib084G0934 Durio zibethinus HOM05D006302 ORTHO05D007960 7.5e-07 58.2 74 45.9
CBR_g4862 Chara braunii HOM05D006302 ORTHO05D007960 9.8e-07 57.8 60 45.0
Pp3c9_1610 Physcomitrium patens HOM05D006302 ORTHO05D007960 9.8e-07 57.8 99 36.4
Pp3c9_1614 Physcomitrium patens HOM05D006302 ORTHO05D007960 9.8e-07 57.8 99 36.4
BcaC05g28760 Brassica carinata HOM05D006302 ORTHO05D007960 3.7e-06 55.8 68 42.6
Sp3g15860 Schrenkiella parvula HOM05D006302 ORTHO05D007960 3.7e-06 55.8 68 42.6
AL3G30880 Arabidopsis lyrata HOM05D006302 ORTHO05D007960 4.9e-06 55.5 85 37.6
THA.LOC104821822 Tarenaya hassleriana HOM05D006302 ORTHO05D007960 4.9e-06 55.5 68 39.7
SHI19119 Sapria himalayana HOM05D006302 ORTHO05D007960 6.3e-06 55.1 47 53.2


User provided reference genes

Program Settings