Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G851.13 Capsicum annuum HOM05D004539 ORTHO05D005482 6.3e-264 913.7 505 100.0
Nitab4.5_0012730g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.9e-212 742.7 515 83.3
Solyc04g081030.3 Solanum lycopersicum HOM05D004539 ORTHO05D005482 2.6e-201 705.7 518 80.7
Sopen04g034650 Solanum pennellii HOM05D004539 ORTHO05D005482 2.1e-195 686.0 518 79.2
PGSC0003DMG400003712 Solanum tuberosum HOM05D004539 ORTHO05D005482 3.1e-194 682.2 566 73.3
Peaxi162Scf00287g00122 Petunia axillaris HOM05D004539 ORTHO05D005482 1.1e-180 637.1 517 75.4
CAN.G851.15 Capsicum annuum HOM05D004539 ORTHO05D005482 3.4e-161 572.4 335 89.3
vmacro21700 Vaccinium macrocarpon HOM05D004539 ORTHO05D005482 1.3e-136 490.7 558 59.0
Rhsim06G0026400 Rhododendron simsii HOM05D004539 ORTHO05D005482 4.7e-134 482.3 556 58.3
Dinv31810 Davidia involucrata HOM05D004539 ORTHO05D005482 4.3e-127 459.1 553 52.8
Dinv39486 Davidia involucrata HOM05D004539 ORTHO05D005482 7.3e-127 458.4 548 55.7
Oeu036929.3 Olea europaea HOM05D004539 ORTHO05D005482 2.0e-124 450.3 560 50.9
Ciclev10004791m.g Citrus clementina HOM05D004539 ORTHO05D005482 4.4e-124 449.1 526 58.2
DCAR_013849 Daucus carota HOM05D004539 ORTHO05D005482 2.9e-123 446.4 552 53.3
Atru.chr13.359 Acer truncatum HOM05D004539 ORTHO05D005482 4.9e-123 445.7 540 57.2
Hma1.2p1_0773F.1_g216150 Hydrangea macrophylla HOM05D004539 ORTHO05D005482 4.9e-123 445.7 556 53.2
SGA_v2.0_scaffold4G01895 Striga asiatica HOM05D004539 ORTHO05D005482 5.0e-120 435.6 542 51.1
SGA_v2.0_scaffold92G28288 Striga asiatica HOM05D004539 ORTHO05D005482 8.6e-120 434.9 542 51.1
MSTRG.25219 Avicennia marina HOM05D004539 ORTHO05D005482 5.6e-119 432.2 475 56.0
Potri.005G234800 Populus trichocarpa HOM05D004539 ORTHO05D005482 1.6e-118 430.6 563 54.4
Thecc.04G277100 Theobroma cacao HOM05D004539 ORTHO05D005482 1.6e-118 430.6 550 54.5
Sabra05G0181000 Salix brachista HOM05D004539 ORTHO05D005482 2.1e-118 430.3 563 54.4
TAR629G0090 Trochodendron aralioides HOM05D004539 ORTHO05D005482 3.6e-118 429.5 563 52.9
COL.COLO4_38586 Corchorus olitorius HOM05D004539 ORTHO05D005482 6.2e-118 428.7 549 50.5
Cc10_g02110 Coffea canephora HOM05D004539 ORTHO05D005482 4.0e-117 426.0 540 53.3
CiPaw.08G062700 Carya illinoinensis HOM05D004539 ORTHO05D005482 3.4e-116 422.9 557 54.4
Duzib192G0399 Durio zibethinus HOM05D004539 ORTHO05D005482 3.4e-116 422.9 548 50.7
COL.COLO4_16338 Corchorus olitorius HOM05D004539 ORTHO05D005482 9.8e-116 421.4 547 49.7
Nn6g32243 Nelumbo nucifera HOM05D004539 ORTHO05D005482 2.9e-115 419.9 574 49.5
Lj4A486G10 Lonicera japonica HOM05D004539 ORTHO05D005482 6.4e-115 418.7 610 49.7
PGR031G2058 Punica granatum HOM05D004539 ORTHO05D005482 3.2e-114 416.4 542 51.7
SalBow6G1219 Salvia bowleyana HOM05D004539 ORTHO05D005482 1.2e-113 414.5 529 52.0
TWI60G0405 Tripterygium wilfordii HOM05D004539 ORTHO05D005482 1.6e-113 414.1 566 50.0
Cfa013903 Carpinus fangiana HOM05D004539 ORTHO05D005482 2.0e-113 413.7 545 54.9
Ciclev10011488m.g Citrus clementina HOM05D004539 ORTHO05D005482 2.7e-113 413.3 515 55.1
Manes.05G152500 Manihot esculenta HOM05D004539 ORTHO05D005482 3.0e-112 409.8 560 51.4
Gohir.D07G219000 Gossypium hirsutum HOM05D004539 ORTHO05D005482 3.9e-112 409.5 545 49.9
Gorai.001G253500 Gossypium raimondii HOM05D004539 ORTHO05D005482 6.6e-112 408.7 545 49.9
Lsat_1_v5_gn_4_116341 Lactuca sativa HOM05D004539 ORTHO05D005482 8.6e-112 408.3 551 49.4
Sabra02G0022100 Salix brachista HOM05D004539 ORTHO05D005482 1.9e-111 407.1 567 51.7
Cpa.g.sc147.12 Carica papaya HOM05D004539 ORTHO05D005482 2.5e-111 406.8 567 48.0
Haze_22584 Corylus avellana HOM05D004539 ORTHO05D005482 2.5e-111 406.8 533 56.5
MD08G1018100 Malus domestica HOM05D004539 ORTHO05D005482 2.5e-111 406.8 558 52.9
Sed0008828 Sechium edule HOM05D004539 ORTHO05D005482 2.5e-111 406.8 548 52.0
CsaV3_3G001200 Cucumis sativus L. HOM05D004539 ORTHO05D005482 3.3e-111 406.4 561 53.7
Lalb_Chr03g0033831 Lupinus albus HOM05D004539 ORTHO05D005482 3.3e-111 406.4 519 51.1
Prupe.1G370700 Prunus persica HOM05D004539 ORTHO05D005482 5.6e-111 405.6 552 49.8
Hund26867 Selenicereus undatus HOM05D004539 ORTHO05D005482 5.6e-111 405.6 543 50.1
Lj4C484T3 Lonicera japonica HOM05D004539 ORTHO05D005482 9.5e-111 404.8 510 52.2
CANSAT54G2989 Cannabis sativa HOM05D004539 ORTHO05D005482 2.8e-110 403.3 558 50.2
Gohir.A07G212900 Gossypium hirsutum HOM05D004539 ORTHO05D005482 4.7e-110 402.5 545 49.2
Oeu030391.1 Olea europaea HOM05D004539 ORTHO05D005482 1.4e-109 401.0 524 51.3
Sed0017053 Sechium edule HOM05D004539 ORTHO05D005482 1.8e-109 400.6 559 51.5
Phvul.003G186400 Phaseolus vulgaris HOM05D004539 ORTHO05D005482 4.0e-109 399.4 542 52.8
Aqoxy7G01402 Aquilegia oxysepala HOM05D004539 ORTHO05D005482 4.4e-108 396.0 487 52.2
Cpa.g.sc140.19 Carica papaya HOM05D004539 ORTHO05D005482 1.7e-107 394.0 566 50.0
Hund17219 Selenicereus undatus HOM05D004539 ORTHO05D005482 1.7e-107 394.0 556 49.1
Migut.C00791 Erythranthe guttata HOM05D004539 ORTHO05D005482 8.3e-107 391.7 523 50.1
VMungo1215G0403 Vigna mungo HOM05D004539 ORTHO05D005482 8.3e-107 391.7 547 53.0
Glyma.05G023000 Glycine max HOM05D004539 ORTHO05D005482 1.9e-106 390.6 547 49.7
Lj1g0010849 Lotus japonicus HOM05D004539 ORTHO05D005482 1.9e-106 390.6 552 49.1
Sc02g0002900 Simmondsia chinensis HOM05D004539 ORTHO05D005482 1.9e-106 390.6 542 52.0
ECA232G1826 Erigeron canadensis HOM05D004539 ORTHO05D005482 2.4e-106 390.2 531 50.7
Glyma.17G076700 Glycine max HOM05D004539 ORTHO05D005482 3.2e-106 389.8 551 51.0
GSVIVG01009825001 Vitis vinifera HOM05D004539 ORTHO05D005482 5.4e-106 389.0 537 52.5
unitig_578.g16661 Utricularia gibba HOM05D004539 ORTHO05D005482 7.8e-105 385.2 516 49.4
Ca_11952_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 1.0e-104 384.8 554 51.4
MELO3C013810.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-104 384.8 547 51.2
Psat7g263720 Pisum sativum HOM05D004539 ORTHO05D005482 2.3e-104 383.6 546 52.6
ClCG05G018590 Citrullus lanatus HOM05D004539 ORTHO05D005482 3.0e-104 383.3 629 47.7
MD15G1017400 Malus domestica HOM05D004539 ORTHO05D005482 6.6e-104 382.1 561 50.8
THA.LOC104813189 Tarenaya hassleriana HOM05D004539 ORTHO05D005482 1.5e-103 380.9 537 49.2
AUR62034567 Chenopodium quinoa HOM05D004539 ORTHO05D005482 1.6e-102 377.5 521 53.0
TAR628G0025 Trochodendron aralioides HOM05D004539 ORTHO05D005482 2.1e-102 377.1 576 49.5
AUR62042221 Chenopodium quinoa HOM05D004539 ORTHO05D005482 3.6e-102 376.3 521 52.8
arahy.Tifrunner.gnm1.ann1.D3BLAG Arachis hypogaea HOM05D004539 ORTHO05D005482 2.3e-101 373.6 574 47.9
Actinidia29798 Actinidia chinensis HOM05D004539 ORTHO05D005482 3.4e-100 369.8 550 48.4
HanXRQChr09g0269371 Helianthus annuus HOM05D004539 ORTHO05D005482 7.6e-100 368.6 402 55.0
Medtr4g022890 Medicago truncatula HOM05D004539 ORTHO05D005482 1.3e-99 367.9 547 51.4
AUR62014430 Chenopodium quinoa HOM05D004539 ORTHO05D005482 8.4e-99 365.2 526 52.7
PSO541G3108 Papaver somniferum HOM05D004539 ORTHO05D005482 8.4e-99 365.2 548 49.5
Lj2g0012026 Lotus japonicus HOM05D004539 ORTHO05D005482 1.4e-98 364.4 554 50.0
PSO675G8916 Papaver somniferum HOM05D004539 ORTHO05D005482 1.4e-98 364.4 549 49.4
EL10Ac1g00555 Beta vulgaris HOM05D004539 ORTHO05D005482 1.6e-97 360.9 520 53.3
arahy.Tifrunner.gnm1.ann1.ME0SR7 Arachis hypogaea HOM05D004539 ORTHO05D005482 1.0e-96 358.2 549 46.1
FAN20G1687 Fragaria x ananassa HOM05D004539 ORTHO05D005482 3.9e-96 356.3 535 49.7
TPR.G5561 Trifolium pratense HOM05D004539 ORTHO05D005482 1.9e-95 354.0 543 47.9
Ca_22519_v3 Cicer arietinum L. HOM05D004539 ORTHO05D005482 2.5e-95 353.6 555 48.3
Thhalv10010315m.g Eutrema salsugineum HOM05D004539 ORTHO05D005482 4.3e-95 352.8 534 48.3
FvH4_2g39030 Fragaria vesca HOM05D004539 ORTHO05D005482 5.6e-95 352.4 533 50.5
FAN27G2077 Fragaria x ananassa HOM05D004539 ORTHO05D005482 7.3e-95 352.1 535 51.2
FAN15G3183 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.8e-94 350.1 537 50.7
Aa31LG4G18400 Aethionema arabicum HOM05D004539 ORTHO05D005482 2.0e-92 344.0 531 49.7
RcHm_v2.0_Chr6g0302141 Rosa chinensis HOM05D004539 ORTHO05D005482 3.2e-90 336.7 527 49.9
A03p47640 Brassica napus HOM05D004539 ORTHO05D005482 6.0e-89 332.4 525 49.5
Ah.02g124950 Amaranthus hybridus HOM05D004539 ORTHO05D005482 1.7e-88 330.9 518 49.8
BraA03t13876Z Brassica rapa HOM05D004539 ORTHO05D005482 8.7e-88 328.6 528 49.2
BolC7t45082H Brassica oleracea HOM05D004539 ORTHO05D005482 1.5e-87 327.8 524 49.2
Carub.0005s1635 Capsella rubella HOM05D004539 ORTHO05D005482 8.1e-86 322.0 532 47.4
BcaC06g33276 Brassica carinata HOM05D004539 ORTHO05D005482 1.8e-85 320.9 536 48.3
C07p45610 Brassica napus HOM05D004539 ORTHO05D005482 1.8e-85 320.9 536 48.3
Sp5g12110 Schrenkiella parvula HOM05D004539 ORTHO05D005482 4.0e-85 319.7 535 46.7
ATR0691G247 Amborella trichopoda HOM05D004539 ORTHO05D005482 5.3e-85 319.3 570 42.6
AL5G30050 Arabidopsis lyrata HOM05D004539 ORTHO05D005482 9.0e-85 318.5 540 42.8
AT3G49990 Arabidopsis thaliana HOM05D004539 ORTHO05D005482 1.2e-84 318.2 532 45.9
CARHR159060 Cardamine hirsuta HOM05D004539 ORTHO05D005482 2.0e-84 317.4 529 46.5
Lj4C792T1 Lonicera japonica HOM05D004539 ORTHO05D005482 2.6e-84 317.0 541 47.0
BcaC06g33116 Brassica carinata HOM05D004539 ORTHO05D005482 7.6e-84 315.5 532 47.7
MBI05_g04844_MAGBIO Magnolia biondii HOM05D004539 ORTHO05D005482 7.1e-82 308.9 673 37.1
HPP92_016110 Vanilla planifolia HOM05D004539 ORTHO05D005482 2.5e-79 300.4 576 40.5
CDE12G0120 Ceratophyllum demersum HOM05D004539 ORTHO05D005482 4.3e-79 299.7 577 39.0
Nitab4.5_0006718g0010 Nicotiana tabacum HOM05D004539 ORTHO05D005482 1.6e-78 297.7 174 86.8
QL02p010726 Quercus lobata HOM05D004539 ORTHO05D005482 3.0e-72 276.9 295 56.3
Cpa.g.sc1191.1 Carica papaya HOM05D004539 ORTHO05D005482 5.6e-71 272.7 301 56.8
Zm00001eb018110 Zea mays HOM05D004539 ORTHO05D005482 1.2e-65 255.0 525 45.0
SEGI_17236 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 3.0e-64 250.4 600 35.2
Os03g0372700 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 7.4e-63 245.7 530 44.0
Eucgr.E04075 Eucalyptus grandis HOM05D004539 ORTHO05D005482 2.1e-62 244.2 314 50.6
Zm00001eb394100 Zea mays HOM05D004539 ORTHO05D005482 2.1e-62 244.2 518 45.4
Zm00001eb394110 Zea mays HOM05D004539 ORTHO05D005482 2.1e-62 244.2 518 45.4
FvH4_7g07450 Fragaria vesca HOM05D004539 ORTHO05D005482 5.1e-48 196.4 402 42.8
Pp3c26_3100 Physcomitrium patens HOM05D004539 ORTHO05D005482 2.0e-44 184.5 598 32.6
SHI27908 Sapria himalayana HOM05D004539 ORTHO05D005482 6.5e-43 179.5 290 41.4
FAN10G3704 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.2e-42 176.8 395 43.0
Mapoly0079s0035 Marchantia polymorpha HOM05D004539 ORTHO05D005482 3.9e-40 170.2 594 31.5
TAR628G0156 Trochodendron aralioides HOM05D004539 ORTHO05D005482 1.5e-39 168.3 143 64.3
FAN22G0834 Fragaria x ananassa HOM05D004539 ORTHO05D005482 2.0e-39 167.9 278 43.5
CDE04G1317 Ceratophyllum demersum HOM05D004539 ORTHO05D009003 2.3e-32 144.4 511 29.2
QL02p010735 Quercus lobata HOM05D004539 ORTHO05D005482 2.0e-31 141.4 259 51.0
SEGI_09517 Sequoiadendron giganteum HOM05D004539 ORTHO05D005482 7.5e-31 139.4 445 32.1
FAN05G0730 Fragaria x ananassa HOM05D000664 ORTHO05D000491 8.2e-30 136.0 103 71.8
AagrBONN_evm.TU.Sc2ySwM_344.1857 Anthoceros agrestis HOM05D004539 ORTHO05D005482 5.0e-27 126.7 527 32.3
CBR_g23809 Chara braunii HOM05D004539 ORTHO05D005482 3.2e-26 124.0 723 26.6
FAN01G2597 Fragaria x ananassa HOM05D004539 ORTHO05D005482 4.4e-23 113.6 197 46.2
FAN06G2453 Fragaria x ananassa HOM05D004539 ORTHO05D005482 5.7e-23 113.2 227 43.6
MELO3C004859.2 Cucumis melo HOM05D004539 ORTHO05D005482 4.8e-22 110.2 88 65.9
Os07g0634300 Oryza sativa ssp. japonica HOM05D004539 ORTHO05D005482 4.1e-21 107.1 224 39.7
Zm00001eb328540 Zea mays HOM05D004539 ORTHO05D005482 1.2e-20 105.5 452 30.5
Potri.002G028100 Populus trichocarpa HOM05D004539 ORTHO05D005482 7.2e-18 96.3 131 48.9
TAR369G0231 Trochodendron aralioides HOM05D004539 ORTHO05D005482 6.1e-17 93.2 100 51.0
MELO3C014949.2 Cucumis melo HOM05D004539 ORTHO05D005482 8.0e-17 92.8 108 51.9
Rhsim06G0016800 Rhododendron simsii HOM05D004539 ORTHO05D005482 1.4e-13 82.0 157 41.4
MELO3C034665.2 Cucumis melo HOM05D004539 ORTHO05D005482 1.0e-11 75.9 183 37.2
AagrBONN_evm.TU.Sc2ySwM_344.3799 Anthoceros agrestis HOM05D004539 ORTHO05D005482 1.3e-11 75.5 458 29.3
SMO367G1003 Selaginella moellendorffii HOM05D004539 ORTHO05D005482 2.5e-10 71.2 182 31.3
PRCOL_00001157 Prasinoderma coloniale HOM05D004539 ORTHO05D005482 9.5e-10 69.3 350 28.0
Rhsim06G0017000 Rhododendron simsii HOM05D004539 ORTHO05D005482 9.5e-10 69.3 123 37.4
BcaB05g23177 Brassica carinata HOM05D004539 ORTHO05D005482 2.9e-06 57.8 115 38.3


User provided reference genes

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