Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G248.16 Capsicum annuum HOM05D001108 ORTHO05D005418 3.0e-96 355.1 174 100.0
CAN.G851.1 Capsicum annuum HOM05D001108 ORTHO05D005418 3.0e-96 355.1 174 100.0
CAN.G248.11 Capsicum annuum HOM05D001108 ORTHO05D005418 5.8e-84 314.3 176 91.5
CAN.G248.33 Capsicum annuum HOM05D001108 ORTHO05D005418 7.9e-81 303.9 165 90.9
Solyc07g054190.4 Solanum lycopersicum HOM05D001108 ORTHO05D005418 1.0e-75 287.0 165 86.7
Sopen07g028120 Solanum pennellii HOM05D001108 ORTHO05D005418 1.0e-75 287.0 165 86.7
Nitab4.5_0004071g0020 Nicotiana tabacum HOM05D001108 ORTHO05D005418 7.1e-74 280.8 165 83.6
Nitab4.5_0000512g0050 Nicotiana tabacum HOM05D001108 ORTHO05D005418 2.7e-73 278.9 165 83.0
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 3.0e-72 275.4 165 82.4
PGSC0003DMG400018350 Solanum tuberosum HOM05D001108 ORTHO05D005418 3.7e-70 268.5 157 85.4
SalBow1G0161 Salvia bowleyana HOM05D001108 ORTHO05D005418 2.2e-67 259.2 165 77.6
CSS0042510 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-66 255.8 165 73.9
CSS0044059 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 2.5e-66 255.8 165 73.9
CSS0002926 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-66 255.0 165 73.9
CSS0039738 Camellia sinensis var. sinensis HOM05D001108 ORTHO05D005418 4.2e-66 255.0 165 73.9
Nn1g04079 Nelumbo nucifera HOM05D001108 ORTHO05D005418 3.6e-65 251.9 165 75.2
Nn1g06569 Nelumbo nucifera HOM05D001108 ORTHO05D005418 7.9e-65 250.8 165 74.5
Lsat_1_v5_gn_3_37280 Lactuca sativa HOM05D001108 ORTHO05D005418 1.3e-64 250.0 166 72.3
HanXRQChr06g0171321 Helianthus annuus HOM05D001108 ORTHO05D005418 1.8e-64 249.6 166 72.3
MSTRG.5628 Avicennia marina HOM05D001108 ORTHO05D005418 6.7e-64 247.7 165 74.5
Migut.C01348 Erythranthe guttata HOM05D001108 ORTHO05D005418 1.1e-63 246.9 165 73.3
Sc21g0002830 Simmondsia chinensis HOM05D001108 ORTHO05D005418 1.5e-63 246.5 165 72.7
HanXRQChr06g0171311 Helianthus annuus HOM05D001108 ORTHO05D005418 3.3e-63 245.4 166 69.9
Ah.01g015170 Amaranthus hybridus HOM05D001108 ORTHO05D005418 4.3e-63 245.0 165 70.9
unitig_60.g25406 Utricularia gibba HOM05D001108 ORTHO05D005418 4.3e-63 245.0 165 73.3
vmacro12300 Vaccinium macrocarpon HOM05D001108 ORTHO05D005418 4.3e-63 245.0 165 73.3
Hund07929 Selenicereus undatus HOM05D001108 ORTHO05D005418 7.4e-63 244.2 165 70.9
EL10Ac9g20764 Beta vulgaris HOM05D001108 ORTHO05D005418 9.7e-63 243.8 165 70.9
MD09G1247800 Malus domestica HOM05D001108 ORTHO05D005418 9.7e-63 243.8 165 70.3
MD17G1240700 Malus domestica HOM05D001108 ORTHO05D005418 1.3e-62 243.4 165 70.3
Haze_21052 Corylus avellana HOM05D001108 ORTHO05D001619 1.7e-62 243.0 165 71.5
QL08p038694 Quercus lobata HOM05D001108 ORTHO05D005418 2.2e-62 242.7 165 71.5
CANSAT80G2367 Cannabis sativa HOM05D001108 ORTHO05D005418 8.2e-62 240.7 165 69.7
Ciclev10013903m.g Citrus clementina HOM05D001108 ORTHO05D005418 1.1e-61 240.4 165 69.7
CiPaw.04G125800 Carya illinoinensis HOM05D001108 ORTHO05D005418 1.4e-61 240.0 165 70.3
Rhsim06G0142500 Rhododendron simsii HOM05D001108 ORTHO05D005418 1.8e-61 239.6 165 70.9
Prupe.3G137500 Prunus persica HOM05D001108 ORTHO05D005418 2.4e-61 239.2 165 70.3
Lsat_1_v5_gn_4_70021 Lactuca sativa HOM05D001108 ORTHO05D005418 3.1e-61 238.8 166 68.7
Cc05_g07130 Coffea canephora HOM05D001108 ORTHO05D005418 4.1e-61 238.4 157 75.2
TAR627G0387 Trochodendron aralioides HOM05D001108 ORTHO05D005418 5.3e-61 238.0 165 70.3
PSO478G1555 Papaver somniferum HOM05D001108 ORTHO05D005418 6.9e-61 237.7 165 70.9
PSO782G4551 Papaver somniferum HOM05D001108 ORTHO05D005418 9.1e-61 237.3 165 70.3
AUR62019549 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.6e-60 235.7 165 66.7
PSO541G4613 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-60 235.7 165 70.3
PSO675G3815 Papaver somniferum HOM05D001108 ORTHO05D005418 2.6e-60 235.7 165 70.3
RcHm_v2.0_Chr7g0232111 Rosa chinensis HOM05D001108 ORTHO05D005418 2.6e-60 235.7 165 69.7
Atru.chr6.2997 Acer truncatum HOM05D001108 ORTHO05D005418 3.4e-60 235.3 166 68.7
EL10Ac4g08320 Beta vulgaris HOM05D001108 ORTHO05D005418 3.4e-60 235.3 165 65.5
Manes.13G146800 Manihot esculenta HOM05D001108 ORTHO05D005418 5.9e-60 234.6 165 70.9
Dinv26419 Davidia involucrata HOM05D001108 ORTHO05D005418 1.3e-59 233.4 157 72.6
AUR62036092 Chenopodium quinoa HOM05D001108 ORTHO05D005418 1.7e-59 233.0 165 65.5
Dinv23643 Davidia involucrata HOM05D001108 ORTHO05D005418 2.2e-59 232.6 157 72.6
DCAR_013007 Daucus carota HOM05D001108 ORTHO05D005418 5.0e-59 231.5 158 72.8
TWI75G0959 Tripterygium wilfordii HOM05D001108 ORTHO05D005418 5.0e-59 231.5 165 68.5
Lalb_Chr03g0029441 Lupinus albus HOM05D001108 ORTHO05D005418 6.5e-59 231.1 165 67.9
FvH4_5g33380 Fragaria vesca HOM05D001108 ORTHO05D005418 1.1e-58 230.3 168 68.5
FAN18G0425 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.1e-58 230.3 168 68.5
Gohir.A09G128300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 1.4e-58 229.9 165 67.9
Eucgr.K01017 Eucalyptus grandis HOM05D001108 ORTHO05D005418 2.5e-58 229.2 178 65.7
Thecc.05G172000 Theobroma cacao HOM05D001108 ORTHO05D005418 2.5e-58 229.2 165 69.1
VMungo1127G1775 Vigna mungo HOM05D001108 ORTHO05D005418 2.5e-58 229.2 165 68.5
Gohir.D09G124300 Gossypium hirsutum HOM05D001108 ORTHO05D005418 4.2e-58 228.4 165 67.9
THA.LOC104824701 Tarenaya hassleriana HOM05D001108 ORTHO05D005418 4.2e-58 228.4 165 70.3
Gorai.006G143100 Gossypium raimondii HOM05D001108 ORTHO05D005418 5.5e-58 228.0 165 67.9
Duzib093G1006 Durio zibethinus HOM05D001108 ORTHO05D005418 7.2e-58 227.6 165 67.9
COL.COLO4_33977 Corchorus olitorius HOM05D001108 ORTHO05D005418 9.4e-58 227.3 165 67.3
Sabra19G0110800 Salix brachista HOM05D001108 ORTHO05D005418 9.4e-58 227.3 165 67.9
Sabra19G0112200 Salix brachista HOM05D001108 ORTHO05D005418 9.4e-58 227.3 165 67.9
Glyma.12G112900 Glycine max HOM05D001108 ORTHO05D005418 1.2e-57 226.9 165 67.3
Ca_20056_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 1.6e-57 226.5 165 65.5
ClCG02G017630 Citrullus lanatus HOM05D001108 ORTHO05D005418 1.6e-57 226.5 165 66.7
FAN04G2154 Fragaria x ananassa HOM05D001108 ORTHO05D005418 1.6e-57 226.5 168 67.3
Potri.019G100500 Populus trichocarpa HOM05D001108 ORTHO05D005418 1.6e-57 226.5 165 67.3
Cpa.g.sc34.160 Carica papaya HOM05D001108 ORTHO05D005418 2.1e-57 226.1 165 68.5
CsaV3_6G012940 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.7e-57 225.7 165 65.5
Lj3g0011439 Lotus japonicus HOM05D001108 ORTHO05D005418 2.7e-57 225.7 165 66.7
Potri.013G131800 Populus trichocarpa HOM05D001108 ORTHO05D005418 2.7e-57 225.7 165 67.9
Duzib128G0360 Durio zibethinus HOM05D001108 ORTHO05D005418 3.6e-57 225.3 165 68.5
Medtr0004s0220 Medicago truncatula HOM05D001108 ORTHO05D005418 3.6e-57 225.3 174 62.6
Sabra13G0111300 Salix brachista HOM05D001108 ORTHO05D005418 3.6e-57 225.3 165 67.9
AUR62002952 Chenopodium quinoa HOM05D001108 ORTHO05D005418 4.7e-57 224.9 192 60.9
Haze_13157 Corylus avellana HOM05D001108 ORTHO05D005418 4.7e-57 224.9 157 69.4
MELO3C000760.2 Cucumis melo HOM05D001108 ORTHO05D005418 4.7e-57 224.9 165 65.5
Phvul.011G114100 Phaseolus vulgaris HOM05D001108 ORTHO05D005418 4.7e-57 224.9 165 66.7
Sed0006413 Sechium edule HOM05D001108 ORTHO05D005418 4.7e-57 224.9 165 66.1
CARHR111330 Cardamine hirsuta HOM05D001108 ORTHO05D005418 7.9e-57 224.2 165 68.5
PGR142G4253 Punica granatum HOM05D001108 ORTHO05D005418 7.9e-57 224.2 165 68.5
BcaC06g36761 Brassica carinata HOM05D001108 ORTHO05D005418 1.0e-56 223.8 165 68.5
C07p00210 Brassica napus HOM05D001108 ORTHO05D005418 1.0e-56 223.8 165 68.5
BolC7t40471H Brassica oleracea HOM05D001108 ORTHO05D005418 1.0e-56 223.8 165 68.5
Cfa017142 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.4e-56 223.4 157 70.1
Actinidia11036 Actinidia chinensis HOM05D001108 ORTHO05D005418 2.3e-56 222.6 155 71.0
CsaV3_6G013000 Cucumis sativus L. HOM05D001108 ORTHO05D005418 2.3e-56 222.6 165 65.5
BcaB03g16863 Brassica carinata HOM05D001108 ORTHO05D005418 3.0e-56 222.2 165 68.5
Thhalv10002078m.g Eutrema salsugineum HOM05D001108 ORTHO05D005418 5.1e-56 221.5 165 67.3
ECA246G0340 Erigeron canadensis HOM05D001108 ORTHO05D005418 6.7e-56 221.1 158 68.4
HPP92_003131 Vanilla planifolia HOM05D001108 ORTHO05D005418 6.7e-56 221.1 176 64.2
Medtr1g066930 Medicago truncatula HOM05D001108 ORTHO05D005418 8.8e-56 220.7 166 64.5
AL3G53780 Arabidopsis lyrata HOM05D001108 ORTHO05D005418 1.1e-55 220.3 165 67.3
AT2G20690 Arabidopsis thaliana HOM05D001108 ORTHO05D005418 2.6e-55 219.2 165 66.7
SEGI_26411 Sequoiadendron giganteum HOM05D001108 ORTHO05D005418 2.6e-55 219.2 165 63.6
A07p00070 Brassica napus HOM05D001108 ORTHO05D005418 3.3e-55 218.8 167 67.1
BraA07t27798Z Brassica rapa HOM05D001108 ORTHO05D005418 3.3e-55 218.8 167 67.1
CDE02G0464 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 5.7e-55 218.0 168 63.7
Carub.0003s3520 Capsella rubella HOM05D001108 ORTHO05D005418 7.4e-55 217.6 165 67.3
SGA_v2.0_scaffold92G28314 Striga asiatica HOM05D001108 ORTHO05D005418 1.3e-54 216.9 166 66.9
CBR_g36747 Chara braunii HOM05D001108 ORTHO05D005418 3.7e-54 215.3 173 61.8
CDE09G0563 Ceratophyllum demersum HOM05D001108 ORTHO05D005418 4.8e-54 214.9 168 63.7
Pp3c2_19260 Physcomitrium patens HOM05D001108 ORTHO05D005418 8.2e-54 214.2 165 64.8
Aqoxy1G02436 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 1.8e-53 213.0 141 74.5
arahy.Tifrunner.gnm1.ann1.SGC5R3 Arachis hypogaea HOM05D001108 ORTHO05D005418 1.8e-53 213.0 165 66.1
arahy.Tifrunner.gnm1.ann1.PPEG78 Arachis hypogaea HOM05D001108 ORTHO05D005418 2.4e-53 212.6 165 66.1
Mapoly0026s0114 Marchantia polymorpha HOM05D001108 ORTHO05D005418 2.4e-53 212.6 165 64.2
AagrBONN_evm.TU.Sc2ySwM_228.5414 Anthoceros agrestis HOM05D001108 ORTHO05D005418 4.1e-53 211.8 165 64.8
arahy.Tifrunner.gnm1.ann1.85LIYI Arachis hypogaea HOM05D001108 ORTHO05D005418 5.3e-53 211.5 165 65.5
arahy.Tifrunner.gnm1.ann1.S0UG05 Arachis hypogaea HOM05D001108 ORTHO05D005418 5.3e-53 211.5 165 66.1
Lj1P722T15 Lonicera japonica HOM05D001108 ORTHO05D005418 1.2e-52 210.3 141 73.8
Sp3g33940 Schrenkiella parvula HOM05D001108 ORTHO05D005418 2.0e-52 209.5 157 67.5
AUR62007757 Chenopodium quinoa HOM05D001108 ORTHO05D005418 2.6e-52 209.1 184 58.7
Aqoxy1G02437 Aquilegia oxysepala HOM05D001108 ORTHO05D005418 2.9e-51 205.7 166 59.6
Cpa.g.sc34.159 Carica papaya HOM05D001108 ORTHO05D005418 5.0e-51 204.9 165 58.8
SMO137G0361 Selaginella moellendorffii HOM05D001108 ORTHO05D005418 5.0e-51 204.9 173 59.5
ATR1096G056 Amborella trichopoda HOM05D001108 ORTHO05D005418 6.5e-51 204.5 165 62.4
CANSAT80G2295 Cannabis sativa HOM05D001108 ORTHO05D005418 8.2e-46 187.6 136 66.9
CAN.G362.18 Capsicum annuum HOM05D001108 ORTHO05D005418 4.1e-45 185.3 164 64.0
Ah.04g164360 Amaranthus hybridus HOM05D001108 ORTHO05D005418 3.5e-44 182.2 165 55.2
Zm00001eb410410 Zea mays HOM05D001108 ORTHO05D005418 8.5e-43 177.6 174 54.6
Zm00001eb410210 Zea mays HOM05D001108 ORTHO05D005418 1.6e-41 173.3 175 53.1
Sabra19G0110900 Salix brachista HOM05D001108 ORTHO05D005418 2.1e-41 172.9 167 56.3
CAN.G248.14 Capsicum annuum HOM05D001108 ORTHO05D005418 5.2e-40 168.3 79 100.0
BcaC04g22783 Brassica carinata HOM05D001108 ORTHO05D005418 2.6e-39 166.0 136 64.7
Os12g0541000 Oryza sativa ssp. japonica HOM05D001108 ORTHO05D005418 7.5e-39 164.5 174 48.9
HanXRQChr06g0169711 Helianthus annuus HOM05D001108 ORTHO05D005418 1.1e-37 160.6 166 53.0
MD09G1265300 Malus domestica HOM05D001108 ORTHO05D005418 1.6e-33 146.7 141 53.9
C09p15330 Brassica napus HOM05D001108 ORTHO05D005418 1.3e-30 137.1 157 51.0
Pp3s30_1010 Physcomitrium patens HOM05D000723 ORTHO05D004839 1.1e-29 134.0 161 44.7
Psat4g001880 Pisum sativum HOM05D001108 ORTHO05D005418 1.5e-26 123.6 165 42.4
Cfa026241 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.9e-26 123.2 143 47.6
FAN08G2132 Fragaria x ananassa HOM05D001108 ORTHO05D005418 8.0e-25 117.9 73 76.7
unitig_88.g27587 Utricularia gibba HOM05D001108 ORTHO05D005418 1.8e-24 116.7 75 74.7
unitig_88.g27586 Utricularia gibba HOM05D001108 ORTHO05D005418 4.4e-23 112.1 70 75.7
Lsat_1_v5_gn_4_42240 Lactuca sativa HOM05D001108 ORTHO05D005418 9.2e-21 104.4 70 70.0
Cre06.g296600 Chlamydomonas reinhardtii HOM05D001108 ORTHO05D005418 1.7e-19 100.1 160 37.5
Ca_28725_v3 Cicer arietinum L. HOM05D001108 ORTHO05D005418 6.6e-19 98.2 168 36.9
PRCOL_00001102 Prasinoderma coloniale HOM05D001108 ORTHO05D005418 5.6e-18 95.1 129 38.8
Psat5g098840 Pisum sativum HOM05D001108 ORTHO05D005418 2.8e-17 92.8 74 54.1
MCO11G757 Micromonas commoda HOM05D001108 ORTHO05D005418 2.3e-16 89.7 151 39.1
Lsat_1_v5_gn_8_150060 Lactuca sativa HOM05D001108 ORTHO05D005418 1.7e-14 83.6 65 60.0
HanXRQChr06g0169731 Helianthus annuus HOM05D001108 ORTHO05D005418 9.2e-13 77.8 51 70.6
Psat5g097760 Pisum sativum HOM05D002292 ORTHO05D005418 1.2e-12 77.4 111 36.0
Medtr4g063470 Medicago truncatula HOM05D001108 ORTHO05D005418 1.0e-11 74.3 66 53.0
Cfa014613 Carpinus fangiana HOM05D001108 ORTHO05D005418 1.3e-11 73.9 97 48.5
AagrBONN_evm.TU.Sc2ySwM_228.459 Anthoceros agrestis HOM05D001108 ORTHO05D005418 5.0e-11 72.0 87 43.7
RcHm_v2.0_Chr2g0153941 Rosa chinensis HOM05D001108 ORTHO05D005418 7.3e-10 68.2 112 41.1
CAN.G10322.1 Capsicum annuum HOM05D001108 ORTHO05D115629 2.0e-07 60.1 73 50.7


User provided reference genes

Program Settings