Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G85.24 Capsicum annuum HOM05D005210 ORTHO05D010286 1.3e-93 346.3 164 100.0
Solyc00g025290.1 Solanum lycopersicum HOM05D005210 ORTHO05D010286 4.5e-54 214.9 105 96.2
PGSC0003DMG400041193 Solanum tuberosum HOM05D005210 ORTHO05D010286 4.5e-54 214.9 105 96.2
Sopen11g014320 Solanum pennellii HOM05D005210 ORTHO05D010286 1.2e-51 206.8 156 68.6
Nitab4.5_0007225g0020 Nicotiana tabacum HOM05D005210 ORTHO05D010286 3.0e-50 202.2 105 90.5
arahy.Tifrunner.gnm1.ann1.QPLA3G Arachis hypogaea HOM05D005210 ORTHO05D010080 8.9e-50 200.7 105 90.5
Lj2P1229T95 Lonicera japonica HOM05D005210 ORTHO05D010286 1.5e-49 199.9 105 90.5
Dinv06682 Davidia involucrata HOM05D005210 ORTHO05D010080 3.4e-49 198.7 140 71.4
Hma1.2p1_0066F.1_g036150 Hydrangea macrophylla HOM05D005210 ORTHO05D010286 4.4e-49 198.4 105 89.5
RhsimMtG0002800 Rhododendron simsii HOM05D002864 ORTHO05D008485 3.7e-48 195.3 105 88.6
Actinidia34888 Actinidia chinensis HOM05D005210 ORTHO05D010080 2.4e-47 192.6 105 87.6
EL10Ac6g14456 Beta vulgaris HOM05D005210 ORTHO05D010286 2.4e-47 192.6 105 84.8
CAN.G1.5 Capsicum annuum HOM05D005210 ORTHO05D010286 4.1e-47 191.8 105 87.6
ClCG09G013030 Citrullus lanatus HOM05D005210 ORTHO05D010286 4.5e-46 188.3 115 79.1
AUR62042343 Chenopodium quinoa HOM05D005210 ORTHO05D010286 1.0e-45 187.2 105 83.8
AUR62043906 Chenopodium quinoa HOM05D005210 ORTHO05D010286 1.0e-45 187.2 105 83.8
Ah.10g028400 Amaranthus hybridus HOM05D005210 ORTHO05D010286 6.6e-45 184.5 105 81.9
SalBow1G3053 Salvia bowleyana HOM05D005210 ORTHO05D010286 8.6e-45 184.1 105 85.7
SabraMtG0001200 Salix brachista HOM05D005210 ORTHO05D010286 1.5e-44 183.3 105 84.8
RcHm_v2.0_Chr7g0235961 Rosa chinensis HOM05D005210 ORTHO05D010286 2.1e-43 179.5 97 86.6
RcHm_v2.0_MTg0499091 Rosa chinensis HOM05D005210 ORTHO05D010286 2.1e-43 179.5 97 86.6
Cfa021370 Carpinus fangiana HOM05D002864 ORTHO05D008485 1.8e-42 176.4 97 85.6
Peaxi162Scf00489g00022 Petunia axillaris HOM05D005210 ORTHO05D011782 4.6e-38 161.8 79 93.7
ECA039G0011 Erigeron canadensis HOM05D005210 ORTHO05D010286 6.0e-38 161.4 140 62.1
Lsat_1_v5_gn_2_41741 Lactuca sativa HOM05D005210 ORTHO05D010286 6.0e-38 161.4 140 62.1
Lsat_1_v5_gn_6_2961 Lactuca sativa HOM05D005210 ORTHO05D010286 6.0e-38 161.4 140 62.1
Lsat_1_v5_gn_0_34981 Lactuca sativa HOM05D005210 ORTHO05D010286 1.7e-37 159.8 142 61.3
Lsat_1_v5_gn_5_16200 Lactuca sativa HOM05D005210 ORTHO05D010286 1.9e-36 156.4 140 60.7
FAN17G0417 Fragaria x ananassa HOM05D005210 ORTHO05D010286 7.3e-36 154.5 97 75.3
Nn117s43415 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.2e-33 147.1 163 52.8
Nn1g10110 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.2e-33 147.1 163 52.8
Nn1g10192 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.2e-33 147.1 163 52.8
Lsat_1_v5_gn_5_16401 Lactuca sativa HOM05D005210 ORTHO05D010286 2.0e-33 146.4 140 58.6
arahy.Tifrunner.gnm1.ann1.2DSY3L Arachis hypogaea HOM05D005210 ORTHO05D010286 1.2e-27 127.1 107 62.6
GSVIVG01005452001 Vitis vinifera HOM05D008814 ORTHO05D010812 1.6e-27 126.7 163 47.9
Glyma.12G155200 Glycine max HOM05D005210 ORTHO05D010286 2.8e-27 125.9 124 55.6
TPR.G28261 Trifolium pratense HOM05D005210 ORTHO05D010286 3.6e-27 125.6 124 55.6
LjContig00439g0018526 Lotus japonicus HOM05D005210 ORTHO05D010286 2.3e-26 122.9 154 48.1
Oeu002130.1 Olea europaea HOM05D005210 ORTHO05D010286 2.9e-24 115.9 155 47.1
CAN.G960.18 Capsicum annuum HOM05D008814 ORTHO05D010812 5.4e-23 111.7 65 83.1
CAN.G1109.2 Capsicum annuum HOM05D008814 ORTHO05D010812 1.6e-22 110.2 65 81.5
Solyc00g500343.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 1.0e-21 107.5 65 81.5
Solyc08g036500.1 Solanum lycopersicum HOM05D008814 ORTHO05D010812 1.0e-21 107.5 65 81.5
CAN.G1.21 Capsicum annuum HOM05D008814 ORTHO05D010812 8.6e-21 104.4 65 78.5
TPR.G24723 Trifolium pratense HOM05D005210 ORTHO05D010286 1.1e-20 104.0 139 42.4
BcaC02g09030 Brassica carinata HOM05D008814 ORTHO05D010812 2.5e-20 102.8 57 82.5
A04p09340 Brassica napus HOM05D008814 ORTHO05D010812 2.5e-20 102.8 57 82.5
BolSC28t60310H Brassica oleracea HOM05D008814 ORTHO05D010812 2.5e-20 102.8 57 82.5
BolSC28t60366H Brassica oleracea HOM05D008814 ORTHO05D010812 2.5e-20 102.8 57 82.5
BraSC48t46234Z Brassica rapa HOM05D008814 ORTHO05D010812 2.5e-20 102.8 57 82.5
BcaC09g49585 Brassica carinata HOM05D008814 ORTHO05D010812 7.3e-20 101.3 57 80.7
PGSC0003DMG400033609 Solanum tuberosum HOM05D008814 ORTHO05D010812 7.3e-20 101.3 65 76.9
CsaV3_7G023800 Cucumis sativus L. HOM05D008814 ORTHO05D010812 2.1e-19 99.8 57 78.9
unitig_87.g27938 Utricularia gibba HOM05D005210 ORTHO05D010286 3.6e-19 99.0 59 83.1
Nitab4.5_0000172g1910 Nicotiana tabacum HOM05D008814 ORTHO05D010812 1.8e-18 96.7 57 78.9
CARHR283020 Cardamine hirsuta HOM05D005210 ORTHO05D010286 7.6e-17 91.3 76 61.8
ATMG00660 Arabidopsis thaliana HOM05D005210 ORTHO05D010286 9.9e-17 90.9 76 61.8
C01p34810 Brassica napus HOM05D008814 ORTHO05D010812 1.7e-16 90.1 56 73.2
C01p34890 Brassica napus HOM05D008814 ORTHO05D010812 2.2e-16 89.7 57 71.9
Psat0s4951g0200 Pisum sativum HOM05D002965 ORTHO05D010812 3.8e-16 89.0 108 48.1
HanXRQChr14g0460771 Helianthus annuus HOM05D005210 ORTHO05D010286 1.1e-15 87.4 45 86.7
HanXRQMTg0579401 Helianthus annuus HOM05D005210 ORTHO05D010286 1.4e-15 87.0 45 86.7
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.4e-15 86.3 96 49.0
Sopen05g009620 Solanum pennellii HOM05D008814 ORTHO05D010812 4.2e-15 85.5 53 75.5
SHI29301 Sapria himalayana HOM05D008814 ORTHO05D010812 7.1e-15 84.7 63 68.3
Nn2g10474 Nelumbo nucifera HOM05D008814 ORTHO05D010812 3.5e-14 82.4 47 78.7
Lj2P1215T12 Lonicera japonica HOM05D008814 ORTHO05D010812 7.8e-14 81.3 54 70.4
SHI04841 Sapria himalayana HOM05D008814 ORTHO05D010812 5.1e-13 78.6 66 63.6
Nitab4.5_0014940g0030 Nicotiana tabacum HOM05D008814 ORTHO05D010812 1.5e-12 77.0 45 80.0
MELO3C013036.2 Cucumis melo HOM05D008814 ORTHO05D010812 1.9e-12 76.6 53 67.9
Nn1g09507 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.9e-12 76.6 47 76.6
Nitab4.5_0009709g0010 Nicotiana tabacum HOM05D005210 ORTHO05D010286 4.3e-12 75.5 41 82.9
Nn8g40503 Nelumbo nucifera HOM05D008814 ORTHO05D010812 7.3e-12 74.7 47 72.3
SHI11895 Sapria himalayana HOM05D005210 ORTHO05D010286 9.6e-12 74.3 62 64.5
Nn1g10191 Nelumbo nucifera HOM05D008814 ORTHO05D010812 1.2e-11 73.9 59 61.0
BcaC02g09031 Brassica carinata HOM05D008814 ORTHO05D010812 8.1e-11 71.2 53 66.0
MELO3C027941.2 Cucumis melo HOM05D008814 ORTHO05D010812 1.4e-10 70.5 42 73.8
Peaxi162Scf01120g00002 Petunia axillaris HOM05D008814 ORTHO05D010812 1.8e-10 70.1 86 47.7
Solyc08g036535.1 Solanum lycopersicum HOM05D018954 ORTHO05D010812 3.8e-08 62.4 42 76.2
BraSC48t46322Z Brassica rapa HOM05D005210 ORTHO05D010286 6.4e-08 61.6 34 82.4
Peaxi162Scf00700g00729 Petunia axillaris HOM05D001102 ORTHO05D001018 9.3e-07 57.8 42 64.3
ATR0987G010 Amborella trichopoda HOM05D008814 ORTHO05D010812 3.5e-06 55.8 40 72.5


User provided reference genes

Program Settings