Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 6.9e-136 487.3 240 100.0
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-87 325.9 227 76.7
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.6e-76 288.9 167 82.0
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-76 288.5 145 98.6
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-74 282.3 145 96.6
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-67 259.2 210 63.3
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-67 259.2 210 63.3
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-67 259.2 210 63.3
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.1e-67 259.2 210 63.3
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 3.1e-67 259.2 210 63.3
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.0e-66 256.5 167 74.9
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 3.1e-59 232.6 167 65.9
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 3.1e-59 232.6 167 65.9
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 5.8e-58 228.4 119 95.8
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 5.4e-56 221.9 154 70.8
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 2.1e-55 219.9 131 79.4
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-55 219.5 135 77.8
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.3e-54 217.2 145 73.8
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.0e-54 216.1 145 73.8
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.0e-54 216.1 145 73.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 9.0e-51 204.5 177 57.1
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 9.0e-51 204.5 177 57.1
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.2e-50 204.1 177 57.1
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.2e-50 204.1 177 57.1
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 5.8e-50 201.8 138 74.6
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.2e-49 199.9 140 70.0
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 6.4e-49 198.4 145 67.6
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.4e-43 179.9 176 53.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-42 176.4 188 51.6
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.2e-41 173.3 169 54.4
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 3.2e-40 169.5 145 57.2
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.2e-40 169.1 145 57.2
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 3.5e-39 166.0 167 53.3
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.3e-38 164.1 167 52.7
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.0e-38 162.9 136 58.1
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-38 162.5 166 51.8
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-38 162.5 166 51.8
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-38 162.5 166 51.8
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.1e-37 161.0 210 41.4
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 2.5e-37 159.8 140 58.6
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 4.8e-36 155.6 163 51.5
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 9.0e-35 151.4 231 40.3
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 9.0e-35 151.4 89 87.6
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 2.9e-33 146.4 177 46.3
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 2.9e-33 146.4 177 46.3
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 4.2e-32 142.5 92 76.1
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.3e-32 141.4 170 47.1
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.6e-31 140.6 177 44.1
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 7.9e-31 138.3 110 59.1
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.9e-31 138.3 85 78.8
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 2.5e-29 133.3 146 50.7
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.2e-28 128.3 101 65.3
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.1e-27 127.9 141 48.9
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 9.0e-27 124.8 167 46.1
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.5e-26 124.0 163 42.9
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 2.6e-26 123.2 140 50.7
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-26 123.2 71 78.9
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 4.5e-26 122.5 88 69.3
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 7.6e-26 121.7 81 70.4
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.7e-25 120.6 125 48.8
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 8.5e-25 118.2 155 43.2
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-24 117.5 74 73.0
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 3.2e-24 116.3 125 48.0
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 4.2e-24 115.9 63 84.1
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.5e-24 115.5 109 54.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 2.7e-23 113.2 127 47.2
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.6e-23 112.5 66 77.3
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 4.6e-23 112.5 66 77.3
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.1e-23 112.1 154 44.8
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 6.1e-23 112.1 154 44.8
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 5.1e-22 109.0 67 73.1
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 6.7e-22 108.6 133 46.6
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.7e-22 108.2 132 47.7
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 9.7e-21 104.8 124 47.6
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 3.7e-20 102.8 145 42.8
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 3.7e-20 102.8 95 53.7
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 8.2e-20 101.7 62 71.0
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 1.4e-19 100.9 58 75.9
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 1.4e-19 100.9 104 51.9
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 2.4e-19 100.1 122 46.7
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.3e-19 99.0 137 47.4
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.4e-18 96.3 134 41.8
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.4e-18 96.3 134 41.8
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 5.9e-18 95.5 122 43.4
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.3e-17 94.4 137 45.3
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-17 94.0 75 62.7
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 2.2e-17 93.6 76 64.5
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.8e-17 92.8 55 76.4
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 6.5e-17 92.0 56 76.8
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 6.5e-17 92.0 121 43.0
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 4.2e-16 89.4 135 42.2
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 5.5e-16 89.0 100 52.0
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 9.4e-16 88.2 96 46.9
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-15 87.8 103 51.5
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-15 87.8 103 51.5
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-15 87.8 103 51.5
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.2e-15 87.8 103 51.5
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.2e-15 87.8 99 46.5
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 3.6e-15 86.3 78 57.7
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 4.7e-15 85.9 158 38.6
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 3.9e-14 82.8 103 51.5
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 3.9e-14 82.8 158 35.4
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 5.1e-14 82.4 106 41.5
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.8e-14 81.6 76 60.5
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 8.8e-14 81.6 85 49.4
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.1e-13 81.3 58 65.5
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 2.0e-13 80.5 125 38.4
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 2.6e-13 80.1 64 67.2
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 2.6e-13 80.1 167 33.5
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 2.2e-12 77.0 147 36.1
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 6.3e-12 75.5 77 51.9
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 3.1e-11 73.2 120 40.0
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 3.1e-11 73.2 124 41.1
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.1e-11 72.8 135 37.0
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 6.9e-11 72.0 89 47.2
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 9.1e-11 71.6 87 47.1
Nitab4.5_0005831g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.0e-10 70.5 149 35.6
MBI04_g15067_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.4e-10 69.7 142 35.9
MBI04_g40993_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.4e-10 69.7 142 35.9
Nitab4.5_0004300g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.4e-10 69.7 120 39.2
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.9e-09 66.6 58 50.0
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.9e-09 66.6 55 52.7
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 5.0e-09 65.9 61 44.3
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 5.0e-09 65.9 61 52.5
Nitab4.5_0010586g0020 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.1e-08 64.7 108 38.9
MBI05_g05345_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.4e-08 64.3 67 47.8
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.4e-08 64.3 55 52.7
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.9e-08 63.9 56 51.8
Nn1g09933 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-08 63.9 120 34.2
Nn1g10009 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-08 63.9 120 34.2
Nitab4.5_0000048g0250 Nicotiana tabacum HOM05D032662 ORTHO05D036864 1.9e-08 63.9 36 77.8
Nitab4.5_0000866g0220 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.9e-08 63.9 151 35.1
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.2e-08 63.2 37 70.3
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 3.2e-08 63.2 169 29.0
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.2e-08 63.2 59 45.8
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 3.2e-08 63.2 50 58.0
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.7e-07 60.1 49 55.1
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 4.7e-07 59.3 56 50.0
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 8.0e-07 58.5 141 29.8
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.0e-06 58.2 101 38.6
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.0e-06 58.2 101 38.6
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 1.0e-06 58.2 62 40.3
Nitab4.5_0000085g0170 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.3e-06 57.0 53 50.9
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-06 56.6 55 45.5
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 3.0e-06 56.6 45 60.0
Cfa023009 Carpinus fangiana HOM05D002660 ORTHO05D013121 6.7e-06 55.5 63 46.0
Glyma.17G185300 Glycine max HOM05D002660 ORTHO05D003902 8.8e-06 55.1 91 36.3


User provided reference genes

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