Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G847.6 Capsicum annuum HOM05D004555 ORTHO05D005305 3.1e-125 451.8 232 100.0
PGSC0003DMG400015428 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.1e-113 412.5 231 88.3
Solyc12g089230.2 Solanum lycopersicum HOM05D000012 ORTHO05D000567 1.2e-111 406.8 227 88.1
Sopen12g031110 Solanum pennellii HOM05D004555 ORTHO05D005305 3.3e-111 405.2 231 86.6
MSTRG.1250 Avicennia marina HOM05D004555 ORTHO05D005305 7.7e-100 367.5 228 78.1
Dinv39456 Davidia involucrata HOM05D004555 ORTHO05D005305 1.6e-97 359.8 225 78.7
PGSC0003DMG400003702 Solanum tuberosum HOM05D004555 ORTHO05D005305 2.8e-97 359.0 225 77.3
Solyc04g080750.4 Solanum lycopersicum HOM05D004555 ORTHO05D005305 6.1e-97 357.8 225 76.9
Peaxi162Scf00189g00812 Petunia axillaris HOM05D004555 ORTHO05D005305 1.0e-96 357.1 222 75.7
Peaxi162Scf00064g00530 Petunia axillaris HOM05D000012 ORTHO05D000567 3.0e-96 355.5 226 79.2
SGA_v2.0_scaffold201G41359 Striga asiatica HOM05D004555 ORTHO05D005305 7.5e-95 350.9 224 77.2
Prupe.1G374200 Prunus persica HOM05D004555 ORTHO05D005305 6.3e-94 347.8 220 76.8
FAN27G1022 Fragaria x ananassa HOM05D004555 ORTHO05D005305 3.1e-93 345.5 224 73.7
MD08G1024400 Malus domestica HOM05D004555 ORTHO05D005305 3.1e-93 345.5 229 72.5
QL02p009638 Quercus lobata HOM05D004555 ORTHO05D005305 5.4e-93 344.7 220 76.4
QL02p009656 Quercus lobata HOM05D004555 ORTHO05D005305 5.4e-93 344.7 220 76.4
Actinidia29808 Actinidia chinensis HOM05D004555 ORTHO05D005305 7.0e-93 344.4 222 75.7
FAN15G3036 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-92 343.6 224 73.2
FAN26G3263 Fragaria x ananassa HOM05D004555 ORTHO05D005305 1.2e-92 343.6 224 73.2
HanXRQChr16g0501461 Helianthus annuus HOM05D004555 ORTHO05D005305 4.5e-92 341.7 224 76.3
FvH4_2g39310 Fragaria vesca HOM05D004555 ORTHO05D005305 1.3e-91 340.1 224 72.3
HanXRQChr09g0269571 Helianthus annuus HOM05D004555 ORTHO05D005305 1.3e-91 340.1 226 74.8
CiPaw.07G156800 Carya illinoinensis HOM05D004555 ORTHO05D005305 2.3e-91 339.3 228 71.9
QL02p009623 Quercus lobata HOM05D004555 ORTHO05D005305 6.6e-91 337.8 222 73.9
RcHm_v2.0_Chr6g0301691 Rosa chinensis HOM05D004555 ORTHO05D005305 6.6e-91 337.8 226 71.7
Migut.C00768 Erythranthe guttata HOM05D004555 ORTHO05D005305 2.5e-90 335.9 225 71.1
GSVIVG01009773001 Vitis vinifera HOM05D004555 ORTHO05D005305 3.3e-90 335.5 226 74.3
Lsat_1_v5_gn_4_117401 Lactuca sativa HOM05D004555 ORTHO05D005305 6.1e-89 331.3 226 71.2
CSS0029656 Camellia sinensis var. sinensis HOM05D004555 ORTHO05D005305 1.4e-88 330.1 226 72.6
Rhsim07G0242900 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.4e-88 330.1 223 73.1
Rhsim07G0242300 Rhododendron simsii HOM05D004555 ORTHO05D005305 1.8e-88 329.7 223 73.1
Atru.chr13.408 Acer truncatum HOM05D004555 ORTHO05D005305 5.2e-88 328.2 225 71.6
CANSAT25G0954 Cannabis sativa HOM05D004555 ORTHO05D005305 6.8e-88 327.8 229 68.6
DCAR_022455 Daucus carota HOM05D004555 ORTHO05D005305 6.8e-88 327.8 227 67.8
Cfa013876 Carpinus fangiana HOM05D004555 ORTHO05D005305 1.2e-87 327.0 221 72.9
Gorai.009G199000 Gossypium raimondii HOM05D004555 ORTHO05D005305 1.2e-87 327.0 229 69.0
Gohir.D05G194000 Gossypium hirsutum HOM05D004555 ORTHO05D005305 2.0e-87 326.2 229 69.0
Nn1g05806 Nelumbo nucifera HOM05D004555 ORTHO05D005305 2.0e-87 326.2 225 73.3
Thecc.08G033700 Theobroma cacao HOM05D004555 ORTHO05D005305 2.6e-87 325.9 221 71.9
Gohir.A05G190600 Gossypium hirsutum HOM05D004555 ORTHO05D005305 5.7e-87 324.7 229 68.1
Nitab4.5_0007928g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 5.7e-87 324.7 251 66.9
Sc02g0005680 Simmondsia chinensis HOM05D004555 ORTHO05D005305 5.7e-87 324.7 220 70.5
Actinidia29807 Actinidia chinensis HOM05D004555 ORTHO05D005305 7.5e-87 324.3 224 69.6
Aqoxy5G01553 Aquilegia oxysepala HOM05D004555 ORTHO05D005305 9.8e-87 323.9 220 71.8
Potri.005G231600 Populus trichocarpa HOM05D004555 ORTHO05D005305 9.8e-87 323.9 226 69.0
Duzib093G2146 Durio zibethinus HOM05D004555 ORTHO05D005305 1.3e-86 323.6 218 70.2
Thecc.08G033500 Theobroma cacao HOM05D004555 ORTHO05D005305 1.3e-86 323.6 221 71.0
Nitab4.5_0000577g0020 Nicotiana tabacum HOM05D004555 ORTHO05D005305 4.9e-86 321.6 230 73.0
Ciclev10002388m.g Citrus clementina HOM05D004555 ORTHO05D005305 1.1e-85 320.5 218 71.6
Lj5g0004312 Lotus japonicus HOM05D004555 ORTHO05D005305 1.1e-85 320.5 223 70.4
Eucgr.F01860 Eucalyptus grandis HOM05D004555 ORTHO05D005305 1.8e-85 319.7 223 70.4
Lalb_Chr22g0354561 Lupinus albus HOM05D004555 ORTHO05D005305 1.8e-85 319.7 219 70.8
Sabra02G0025300 Salix brachista HOM05D004555 ORTHO05D005305 1.8e-85 319.7 226 69.0
ClCG08G014730 Citrullus lanatus HOM05D004555 ORTHO05D005305 2.4e-85 319.3 220 69.1
Lj4P789T31 Lonicera japonica HOM05D004555 ORTHO05D005305 5.4e-85 318.2 223 67.7
Glyma.17G253500 Glycine max HOM05D004555 ORTHO05D005305 7.0e-85 317.8 222 68.5
Cfa013877 Carpinus fangiana HOM05D004555 ORTHO05D005305 9.2e-85 317.4 223 70.4
MBI16_g23832_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 9.2e-85 317.4 219 70.8
Atru.chr13.407 Acer truncatum HOM05D004555 ORTHO05D005305 1.6e-84 316.6 226 69.0
COL.COLO4_26241 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.7e-84 315.8 222 69.8
Glyma.14G071100 Glycine max HOM05D004555 ORTHO05D005305 2.7e-84 315.8 222 68.5
THA.LOC104812564 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 1.0e-83 313.9 223 67.7
CsaV3_2G029030 Cucumis sativus L. HOM05D004555 ORTHO05D005305 1.3e-83 313.5 221 69.2
ECA232G1060 Erigeron canadensis HOM05D004555 ORTHO05D005305 2.3e-83 312.8 196 78.6
arahy.Tifrunner.gnm1.ann1.MX0J1Q Arachis hypogaea HOM05D004555 ORTHO05D005305 5.0e-83 311.6 225 68.0
PSO724G1102 Papaver somniferum HOM05D004555 ORTHO05D005305 5.0e-83 311.6 224 67.0
THA.LOC104814152 Tarenaya hassleriana HOM05D004555 ORTHO05D005305 6.6e-83 311.2 219 68.0
Hund17186 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-82 310.1 222 68.0
QL02p009603 Quercus lobata HOM05D004555 ORTHO05D005305 3.3e-82 308.9 220 69.1
arahy.Tifrunner.gnm1.ann1.LAIT0P Arachis hypogaea HOM05D004555 ORTHO05D005305 4.3e-82 308.5 226 68.1
EL10Ac1g00613 Beta vulgaris HOM05D004555 ORTHO05D005305 4.3e-82 308.5 222 68.9
Sed0025869 Sechium edule HOM05D004555 ORTHO05D005305 2.1e-81 306.2 219 68.0
Carub.0001s3280 Capsella rubella HOM05D004555 ORTHO05D005305 3.6e-81 305.4 226 65.9
Sp1g29900 Schrenkiella parvula HOM05D004555 ORTHO05D005305 4.7e-81 305.1 226 65.5
Phvul.001G011500 Phaseolus vulgaris HOM05D004555 ORTHO05D005305 8.0e-81 304.3 220 66.4
TWI56G1140 Tripterygium wilfordii HOM05D004555 ORTHO05D005305 2.3e-80 302.8 249 63.1
VMungo0647G2091 Vigna mungo HOM05D004555 ORTHO05D005305 2.3e-80 302.8 218 67.0
Medtr1g022950 Medicago truncatula HOM05D004555 ORTHO05D005305 3.1e-80 302.4 223 66.4
AT1G35180 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 4.0e-80 302.0 226 65.0
Oeu030598.1 Olea europaea HOM05D004555 ORTHO05D005305 5.2e-80 301.6 231 69.3
Duzib116G0274 Durio zibethinus HOM05D004555 ORTHO05D005305 8.9e-80 300.8 204 71.1
Hund17243 Selenicereus undatus HOM05D004555 ORTHO05D005305 8.9e-80 300.8 222 64.9
CANSAT25G2211 Cannabis sativa HOM05D004555 ORTHO05D005305 1.2e-79 300.4 224 64.3
Thhalv10001837m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 1.2e-79 300.4 225 64.9
AL1G49880 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 1.5e-79 300.1 226 64.6
TPR.G30491 Trifolium pratense HOM05D004555 ORTHO05D005305 4.4e-79 298.5 224 63.8
SalBow7G0356 Salvia bowleyana HOM05D004555 ORTHO05D005305 7.5e-79 297.7 281 58.4
unitig_26.g9839 Utricularia gibba HOM05D004555 ORTHO05D005305 9.8e-79 297.4 218 67.9
COL.COLO4_26242 Corchorus olitorius HOM05D004555 ORTHO05D005305 2.2e-78 296.2 187 75.9
PSO729G0189 Papaver somniferum HOM05D004555 ORTHO05D005305 4.9e-78 295.0 250 59.2
BcaC05g27748 Brassica carinata HOM05D004555 ORTHO05D005305 1.1e-77 293.9 228 61.8
C05p37330 Brassica napus HOM05D004555 ORTHO05D005305 1.1e-77 293.9 228 61.8
A05p23860 Brassica napus HOM05D004555 ORTHO05D005305 1.9e-77 293.1 228 61.8
BraA05t21262Z Brassica rapa HOM05D004555 ORTHO05D005305 1.9e-77 293.1 228 61.8
Nitab4.5_0001091g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.9e-77 293.1 230 67.4
BcaB03g13672 Brassica carinata HOM05D004555 ORTHO05D005305 2.4e-77 292.7 224 62.1
CARHR288350 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.4e-77 291.6 227 61.7
Cc10_g14070 Coffea canephora HOM05D004555 ORTHO05D005305 2.7e-76 289.3 219 64.8
BolC5t32477H Brassica oleracea HOM05D004555 ORTHO05D005305 4.6e-76 288.5 228 61.4
vmacro04301 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.3e-75 287.0 219 67.6
vmacro22853 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 1.3e-75 287.0 219 67.6
AL1G52650 Arabidopsis lyrata HOM05D004555 ORTHO05D005305 5.0e-75 285.0 226 62.8
AUR62014481 Chenopodium quinoa HOM05D004555 ORTHO05D005305 5.0e-75 285.0 225 61.8
Thhalv10011751m.g Eutrema salsugineum HOM05D004555 ORTHO05D005305 5.0e-75 285.0 226 61.1
BcaB04g17579 Brassica carinata HOM05D004555 ORTHO05D005305 8.6e-75 284.3 226 61.5
Sp1g33840 Schrenkiella parvula HOM05D004555 ORTHO05D005305 1.5e-74 283.5 226 60.6
A08p06280 Brassica napus HOM05D004555 ORTHO05D005305 2.5e-74 282.7 227 61.2
BraA08t32631Z Brassica rapa HOM05D004555 ORTHO05D005305 2.5e-74 282.7 227 61.2
BcaC07g37280 Brassica carinata HOM05D004555 ORTHO05D005305 7.3e-74 281.2 227 60.8
C08p07100 Brassica napus HOM05D004555 ORTHO05D005305 7.3e-74 281.2 227 60.8
BolC8t47554H Brassica oleracea HOM05D004555 ORTHO05D005305 7.3e-74 281.2 227 60.8
BraA02t08192Z Brassica rapa HOM05D004555 ORTHO05D005305 9.5e-74 280.8 227 59.5
AT1G35170 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 227 61.2
Haze_22549 Corylus avellana HOM05D004555 ORTHO05D005305 1.2e-73 280.4 195 69.2
AT1G45010 Arabidopsis thaliana HOM05D004555 ORTHO05D005305 1.6e-73 280.0 226 61.9
Carub.0001s3550 Capsella rubella HOM05D004555 ORTHO05D005305 2.1e-73 279.6 225 62.2
Os01g0262500 Oryza sativa ssp. japonica HOM05D004555 ORTHO05D005305 2.1e-73 279.6 218 61.5
Hma1.2p1_1194F.1_g265760 Hydrangea macrophylla HOM05D004555 ORTHO05D005305 4.7e-73 278.5 187 72.2
A02p31830 Brassica napus HOM05D004555 ORTHO05D005305 8.1e-73 277.7 227 58.6
Cpa.g.sc99.8 Carica papaya HOM05D004555 ORTHO05D005305 1.5e-71 273.5 217 65.4
ATR1154G019 Amborella trichopoda HOM05D004555 ORTHO05D005305 4.4e-71 271.9 198 61.6
Psat6g009720 Pisum sativum HOM05D004555 ORTHO05D005305 9.2e-69 264.2 191 65.4
Manes.18G021200 Manihot esculenta HOM05D004555 ORTHO05D005305 1.0e-67 260.8 211 63.0
BcaC03g17015 Brassica carinata HOM05D004555 ORTHO05D005305 3.0e-67 259.2 232 56.5
BolC2t11011H Brassica oleracea HOM05D004555 ORTHO05D005305 3.0e-67 259.2 232 56.5
Sopen04g034340 Solanum pennellii HOM05D004555 ORTHO05D005305 7.3e-66 254.6 152 80.9
Cc10_g02450 Coffea canephora HOM05D004555 ORTHO05D005305 6.8e-64 248.1 149 79.9
AUR62034520 Chenopodium quinoa HOM05D004555 ORTHO05D005305 8.9e-64 247.7 191 62.8
Nitab4.5_0001861g0030 Nicotiana tabacum HOM05D004555 ORTHO05D005305 1.3e-62 243.8 225 58.2
SEGI_11700 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 2.9e-62 242.7 204 53.9
CARHR036190 Cardamine hirsuta HOM05D004555 ORTHO05D005305 4.9e-62 241.9 195 60.0
Zm00001eb333330 Zea mays HOM05D004555 ORTHO05D005305 2.4e-61 239.6 207 58.0
TPR.G17924 Trifolium pratense HOM05D004555 ORTHO05D005305 1.1e-58 230.7 159 68.6
MELO3C010969.2 Cucumis melo HOM05D004555 ORTHO05D005305 3.3e-58 229.2 160 70.6
MBI16_g23833_MAGBIO Magnolia biondii HOM05D004555 ORTHO05D005305 6.2e-57 224.9 231 55.0
Aa31LG6G8640 Aethionema arabicum HOM05D004555 ORTHO05D005305 1.5e-55 220.3 180 61.1
AagrBONN_evm.TU.Sc2ySwM_369.584 Anthoceros agrestis HOM05D004555 ORTHO05D005305 1.3e-54 217.2 217 47.9
C02p49220 Brassica napus HOM05D004555 ORTHO05D005305 9.3e-53 211.1 217 50.2
SMO259G0011 Selaginella moellendorffii HOM05D004555 ORTHO05D005305 4.6e-52 208.8 214 50.5
Sed0024456 Sechium edule HOM05D004555 ORTHO05D005305 3.0e-51 206.1 177 61.0
FAN20G2579 Fragaria x ananassa HOM05D004555 ORTHO05D005305 8.7e-51 204.5 222 49.5
Mapoly0020s0017 Marchantia polymorpha HOM05D004555 ORTHO05D005305 1.5e-50 203.8 212 47.2
SEGI_31948 Sequoiadendron giganteum HOM05D004555 ORTHO05D005305 9.9e-47 191.0 144 57.6
HanXRQChr09g0269541 Helianthus annuus HOM05D004555 ORTHO05D005305 6.2e-41 171.8 118 71.2
Nitab4.5_0007928g0040 Nicotiana tabacum HOM05D004555 ORTHO05D005305 8.4e-38 161.4 124 66.9
Lalb_Chr14g0369521 Lupinus albus HOM05D004555 ORTHO05D005305 1.4e-37 160.6 118 63.6
CBR_g32335 Chara braunii HOM05D004555 ORTHO05D005305 9.3e-37 157.9 181 42.5
TPR.G29885 Trifolium pratense HOM05D004555 ORTHO05D005305 1.3e-35 154.1 118 63.6
Haze_22557 Corylus avellana HOM05D004555 ORTHO05D005305 1.6e-33 147.1 89 77.5
Pp3c7_6700 Physcomitrium patens HOM05D004555 ORTHO05D005305 2.9e-30 136.3 146 44.5
Lalb_Chr14g0369531 Lupinus albus HOM05D004555 ORTHO05D005305 6.5e-30 135.2 89 74.2
MCO11G540 Micromonas commoda HOM05D004555 ORTHO05D005305 2.0e-23 113.6 209 31.6
vmacro04300 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-22 109.8 154 42.9
vmacro22852 Vaccinium macrocarpon HOM05D004555 ORTHO05D005305 2.9e-22 109.8 154 42.9
Cc11_g05350 Coffea canephora HOM05D004555 ORTHO05D005305 3.8e-22 109.4 74 71.6
QL02p009653 Quercus lobata HOM05D004555 ORTHO05D005305 5.7e-18 95.5 65 70.8
Hund17190 Selenicereus undatus HOM05D004555 ORTHO05D005305 1.5e-15 87.4 80 56.2
PGR031G0233 Punica granatum HOM05D004555 ORTHO05D005305 7.7e-15 85.1 66 56.1
CAN.G851.44 Capsicum annuum HOM05D007089 ORTHO05D005305 2.5e-13 80.1 47 76.6
CARHR263530 Cardamine hirsuta HOM05D004555 ORTHO05D005305 5.5e-13 79.0 71 53.5
HanXRQChr09g0269551 Helianthus annuus HOM05D004555 ORTHO05D005305 5.3e-08 62.4 51 58.8
arahy.Tifrunner.gnm1.ann1.5FL4AU Arachis hypogaea HOM05D000229 ORTHO05D005305 6.5e-06 55.5 42 59.5


User provided reference genes

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