Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G847.1 Capsicum annuum HOM05D004171 ORTHO05D004983 1.7e-111 406.0 200 100.0
CAN.G162.108 Capsicum annuum HOM05D004171 ORTHO05D004983 3.9e-100 368.2 200 90.5
Nitab4.5_0000297g0160 Nicotiana tabacum HOM05D004171 ORTHO05D004983 2.7e-93 345.5 200 85.5
Solyc07g063620.3 Solanum lycopersicum HOM05D004171 ORTHO05D004983 4.6e-93 344.7 200 85.5
Sopen07g031800 Solanum pennellii HOM05D004171 ORTHO05D004983 4.6e-93 344.7 200 85.5
PGSC0003DMG400019283 Solanum tuberosum HOM05D004171 ORTHO05D004983 7.9e-93 344.0 200 85.0
Peaxi162Scf01216g00047 Petunia axillaris HOM05D004171 ORTHO05D004983 1.0e-92 343.6 200 85.5
Nitab4.5_0009110g0010 Nicotiana tabacum HOM05D004171 ORTHO05D004983 6.7e-92 340.9 200 84.5
CAN.G187.6 Capsicum annuum HOM05D004171 ORTHO05D004983 9.1e-81 303.9 186 83.3
MSTRG.12927 Avicennia marina HOM05D004171 ORTHO05D004983 2.0e-80 302.8 198 71.7
Cc05_g12750 Coffea canephora HOM05D004171 ORTHO05D004983 4.5e-80 301.6 200 72.0
Dinv08350 Davidia involucrata HOM05D004171 ORTHO05D004983 4.2e-78 295.0 198 71.7
PGR031G0147 Punica granatum HOM05D004171 ORTHO05D004983 4.2e-78 295.0 198 69.7
Thecc.07G070400 Theobroma cacao HOM05D004171 ORTHO05D004983 2.1e-77 292.7 198 70.2
Duzib170G1088 Durio zibethinus HOM05D004171 ORTHO05D004983 2.7e-77 292.4 198 69.2
Actinidia05147 Actinidia chinensis HOM05D004171 ORTHO05D004983 1.8e-76 289.7 198 69.2
SalBow7G4117 Salvia bowleyana HOM05D004171 ORTHO05D004983 1.8e-76 289.7 198 70.2
Gohir.A04G025600 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-76 289.3 198 68.7
Gohir.D05G362300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 2.3e-76 289.3 198 68.7
Gorai.009G430400 Gossypium raimondii HOM05D004171 ORTHO05D004983 2.3e-76 289.3 198 68.7
Hma1.2p1_1176F.1_g264170 Hydrangea macrophylla HOM05D004171 ORTHO05D004983 2.3e-76 289.3 198 69.7
COL.COLO4_09488 Corchorus olitorius HOM05D004171 ORTHO05D004983 3.9e-76 288.5 198 68.7
Duzib213G0518 Durio zibethinus HOM05D004171 ORTHO05D004983 3.9e-76 288.5 198 68.7
Manes.15G082500 Manihot esculenta HOM05D004171 ORTHO05D004983 3.9e-76 288.5 198 68.2
Dinv22359 Davidia involucrata HOM05D004171 ORTHO05D004983 5.1e-76 288.1 198 70.7
Cpa.g.sc12.36 Carica papaya HOM05D004171 ORTHO05D004983 6.7e-76 287.7 198 66.2
TAR627G1073 Trochodendron aralioides HOM05D004171 ORTHO05D004983 6.7e-76 287.7 198 68.7
Actinidia09971 Actinidia chinensis HOM05D004171 ORTHO05D004983 8.8e-76 287.3 198 68.7
Cfa020499 Carpinus fangiana HOM05D004171 ORTHO05D004983 1.5e-75 286.6 198 68.2
Sabra11G0111100 Salix brachista HOM05D004171 ORTHO05D004983 1.5e-75 286.6 200 68.5
Potri.011G126300 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.0e-75 286.2 200 68.0
TWI38G2120 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.6e-75 285.8 198 67.7
TWI39G0675 Tripterygium wilfordii HOM05D004171 ORTHO05D004983 2.6e-75 285.8 199 67.8
Migut.H01900 Erythranthe guttata HOM05D004171 ORTHO05D004983 3.3e-75 285.4 198 69.2
Ciclev10009152m.g Citrus clementina HOM05D004171 ORTHO05D004983 4.4e-75 285.0 200 69.5
PGR083G0998 Punica granatum HOM05D004171 ORTHO05D004983 1.7e-74 283.1 198 66.7
RcHm_v2.0_Chr5g0036121 Rosa chinensis HOM05D004171 ORTHO05D004983 1.7e-74 283.1 195 66.2
vmacro11810 Vaccinium macrocarpon HOM05D004171 ORTHO05D004983 1.7e-74 283.1 198 67.2
Duzib268G0239 Durio zibethinus HOM05D004171 ORTHO05D004983 2.8e-74 282.3 198 67.7
Glyma.12G134300 Glycine max HOM05D004171 ORTHO05D004983 2.8e-74 282.3 198 66.2
Phvul.011G138400 Phaseolus vulgaris HOM05D004171 ORTHO05D004983 2.8e-74 282.3 198 65.2
arahy.Tifrunner.gnm1.ann1.EUN1K4 Arachis hypogaea HOM05D004171 ORTHO05D004983 3.7e-74 282.0 198 65.2
CiPaw.11G177500 Carya illinoinensis HOM05D004171 ORTHO05D004983 3.7e-74 282.0 198 67.2
Manes.03G117000 Manihot esculenta HOM05D004171 ORTHO05D004983 3.7e-74 282.0 198 66.2
Haze_09543 Corylus avellana HOM05D004171 ORTHO05D004983 4.8e-74 281.6 198 67.2
arahy.Tifrunner.gnm1.ann1.SXKR4Z Arachis hypogaea HOM05D004171 ORTHO05D004983 6.3e-74 281.2 198 65.2
Lj3g0003583 Lotus japonicus HOM05D004171 ORTHO05D004983 6.3e-74 281.2 198 65.7
Gohir.D13G148000 Gossypium hirsutum HOM05D004171 ORTHO05D004983 8.2e-74 280.8 198 66.7
Gorai.013G165800 Gossypium raimondii HOM05D004171 ORTHO05D004983 8.2e-74 280.8 198 66.7
Oeu006766.1 Olea europaea HOM05D004171 ORTHO05D004983 8.2e-74 280.8 198 70.2
Atru.chr2.2929 Acer truncatum HOM05D004171 ORTHO05D004983 1.4e-73 280.0 200 66.5
VMungo1127G0586 Vigna mungo HOM05D004171 ORTHO05D004983 1.4e-73 280.0 198 64.6
Prupe.4G191500 Prunus persica HOM05D004171 ORTHO05D004983 2.4e-73 279.3 195 66.7
Rhsim06G0192400 Rhododendron simsii HOM05D004171 ORTHO05D004983 2.4e-73 279.3 198 66.7
MSTRG.14383 Avicennia marina HOM05D004171 ORTHO05D004983 3.1e-73 278.9 198 67.7
Gohir.A13G143300 Gossypium hirsutum HOM05D004171 ORTHO05D004983 4.1e-73 278.5 198 66.2
MD11G1235500 Malus domestica HOM05D004171 ORTHO05D004983 4.1e-73 278.5 195 66.2
Hund23371 Selenicereus undatus HOM05D004171 ORTHO05D004983 5.3e-73 278.1 198 65.2
arahy.Tifrunner.gnm1.ann1.H2QIWP Arachis hypogaea HOM05D004171 ORTHO05D004983 1.5e-72 276.6 198 63.1
arahy.Tifrunner.gnm1.ann1.UD3S3B Arachis hypogaea HOM05D004171 ORTHO05D004983 1.5e-72 276.6 198 63.1
CSS0009250 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.5e-72 276.6 198 66.2
CSS0026220 Camellia sinensis var. sinensis HOM05D004171 ORTHO05D004983 1.5e-72 276.6 199 67.3
MD03G1217700 Malus domestica HOM05D004171 ORTHO05D004983 1.5e-72 276.6 195 66.7
Psat4g140880 Pisum sativum HOM05D004171 ORTHO05D004983 1.5e-72 276.6 200 65.0
THA.LOC104799905 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 3.4e-72 275.4 198 64.1
Eucgr.F01074 Eucalyptus grandis HOM05D004171 ORTHO05D004983 4.5e-72 275.0 198 65.2
TAR629G3225 Trochodendron aralioides HOM05D004171 ORTHO05D004983 5.9e-72 274.6 198 65.7
CiPaw.12G123300 Carya illinoinensis HOM05D004171 ORTHO05D004983 1.0e-71 273.9 198 65.7
FAN11G0158 Fragaria x ananassa HOM05D004171 ORTHO05D004983 1.7e-71 273.1 196 65.3
Medtr8g464760 Medicago truncatula HOM05D004171 ORTHO05D004983 1.7e-71 273.1 200 63.5
CsaV3_3G044320 Cucumis sativus L. HOM05D004171 ORTHO05D004983 2.9e-71 272.3 198 65.7
FvH4_3g21110 Fragaria vesca HOM05D004171 ORTHO05D004983 2.9e-71 272.3 196 64.8
SGA_v2.0_scaffold9G04958 Striga asiatica HOM05D004171 ORTHO05D004983 2.9e-71 272.3 198 64.1
MELO3C018184.2 Cucumis melo HOM05D004171 ORTHO05D004983 3.8e-71 271.9 198 64.6
FAN16G3093 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.8e-71 271.9 196 65.3
Lalb_Chr01g0017051 Lupinus albus HOM05D004171 ORTHO05D004983 3.8e-71 271.9 198 64.6
PSO541G5656 Papaver somniferum HOM05D004171 ORTHO05D004983 3.8e-71 271.9 198 64.1
QL08p017518 Quercus lobata HOM05D004171 ORTHO05D004983 3.8e-71 271.9 197 64.5
Aqoxy1G02716 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 5.0e-71 271.6 198 64.1
AL7G25450 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.0e-71 271.6 197 62.4
ClCG11G018550 Citrullus lanatus HOM05D004171 ORTHO05D004983 6.5e-71 271.2 198 64.1
PSO675G0635 Papaver somniferum HOM05D004171 ORTHO05D004983 6.5e-71 271.2 198 63.1
Glyma.12G218800 Glycine max HOM05D004171 ORTHO05D004983 8.5e-71 270.8 198 64.1
FAN25G0362 Fragaria x ananassa HOM05D004171 ORTHO05D004983 2.5e-70 269.2 196 63.8
Lj1A854T34 Lonicera japonica HOM05D004171 ORTHO05D004983 2.5e-70 269.2 198 66.2
MBI02_g13230_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.5e-70 269.2 198 62.6
Eucgr.F03360 Eucalyptus grandis HOM05D004171 ORTHO05D004983 3.2e-70 268.9 199 63.3
Sp7g25280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 3.2e-70 268.9 197 61.4
Thhalv10025946m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 4.2e-70 268.5 197 61.9
THA.LOC104813397 Tarenaya hassleriana HOM05D004171 ORTHO05D004983 4.2e-70 268.5 198 62.1
CARHR235000 Cardamine hirsuta HOM05D004171 ORTHO05D004983 5.5e-70 268.1 197 62.4
AT4G27350 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.2e-69 266.9 197 60.4
GSVIVG01014444001 Vitis vinifera HOM05D004171 ORTHO05D004983 1.6e-69 266.5 198 61.1
Aa31LG3G10200 Aethionema arabicum HOM05D004171 ORTHO05D004983 2.7e-69 265.8 197 61.9
Thhalv10014333m.g Eutrema salsugineum HOM05D004171 ORTHO05D004983 2.7e-69 265.8 197 61.9
BcaNung03036 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-69 265.4 197 61.9
BcaNung05201 Brassica carinata HOM05D004171 ORTHO05D004983 3.6e-69 265.4 197 61.9
CANSAT11G0840 Cannabis sativa HOM05D004171 ORTHO05D004983 3.6e-69 265.4 198 62.6
BcaB05g22115 Brassica carinata HOM05D004171 ORTHO05D004983 4.7e-69 265.0 197 61.4
BraA02t06113Z Brassica rapa HOM05D004171 ORTHO05D004983 4.7e-69 265.0 197 61.4
Sed0003677 Sechium edule HOM05D004171 ORTHO05D004983 4.7e-69 265.0 198 62.6
Sc16g0006730 Simmondsia chinensis HOM05D004171 ORTHO05D004983 4.7e-69 265.0 198 61.6
A02p10500 Brassica napus HOM05D004171 ORTHO05D004983 1.0e-68 263.8 197 61.4
Ah.04g165380 Amaranthus hybridus HOM05D004171 ORTHO05D004983 1.4e-68 263.5 199 62.3
AT5G54240 Arabidopsis thaliana HOM05D004171 ORTHO05D004983 1.4e-68 263.5 197 60.9
BcaNung05200 Brassica carinata HOM05D004171 ORTHO05D004983 1.4e-68 263.5 197 61.9
Carub.0007s1352 Capsella rubella HOM05D004171 ORTHO05D004983 1.4e-68 263.5 197 60.9
Lalb_Chr19g0134521 Lupinus albus HOM05D004171 ORTHO05D004983 2.3e-68 262.7 198 61.6
Sp6g16280 Schrenkiella parvula HOM05D004171 ORTHO05D004983 2.3e-68 262.7 197 60.9
C09p44520 Brassica napus HOM05D004171 ORTHO05D004983 3.0e-68 262.3 197 61.9
BraA10t43247Z Brassica rapa HOM05D004171 ORTHO05D004983 3.0e-68 262.3 197 61.9
CARHR267500 Cardamine hirsuta HOM05D004171 ORTHO05D004983 3.0e-68 262.3 197 61.4
BcaB08g35778 Brassica carinata HOM05D004171 ORTHO05D004983 3.9e-68 261.9 197 61.4
AUR62029303 Chenopodium quinoa HOM05D004171 ORTHO05D004983 3.9e-68 261.9 199 61.8
AUR62015590 Chenopodium quinoa HOM05D004171 ORTHO05D004983 6.7e-68 261.2 199 62.3
BcaC04g20360 Brassica carinata HOM05D004171 ORTHO05D004983 8.8e-68 260.8 197 61.4
BcaC09g50581 Brassica carinata HOM05D004171 ORTHO05D004983 8.8e-68 260.8 197 60.9
BolC1t02294H Brassica oleracea HOM05D004171 ORTHO05D004983 8.8e-68 260.8 197 60.9
BolC9t57324H Brassica oleracea HOM05D004171 ORTHO05D004983 8.8e-68 260.8 197 61.4
A01p18530 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-67 260.4 197 60.9
A10p11530 Brassica napus HOM05D004171 ORTHO05D004983 1.1e-67 260.4 197 61.9
BraA01t01802Z Brassica rapa HOM05D004171 ORTHO05D004983 1.1e-67 260.4 197 60.9
DCAR_009989 Daucus carota HOM05D004171 ORTHO05D004983 2.0e-67 259.6 198 64.1
HanXRQChr02g0031371 Helianthus annuus HOM05D004171 ORTHO05D004983 2.0e-67 259.6 199 61.8
MBI18_g19831_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 2.0e-67 259.6 198 60.6
AL8G29560 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 5.7e-67 258.1 197 59.9
C01p23480 Brassica napus HOM05D004171 ORTHO05D004983 5.7e-67 258.1 197 59.9
Lsat_1_v5_gn_7_105981 Lactuca sativa HOM05D004171 ORTHO05D004983 9.7e-67 257.3 199 62.3
HPP92_012360 Vanilla planifolia HOM05D004171 ORTHO05D004983 2.2e-66 256.1 198 58.1
Potri.001G408001 Populus trichocarpa HOM05D004171 ORTHO05D004983 2.8e-66 255.8 181 66.9
TPR.G25226 Trifolium pratense HOM05D004171 ORTHO05D004983 3.7e-66 255.4 200 60.5
ATR0693G292 Amborella trichopoda HOM05D004171 ORTHO05D004983 8.2e-66 254.2 198 58.6
unitig_699.g19211 Utricularia gibba HOM05D004171 ORTHO05D004983 1.8e-65 253.1 198 62.6
VMungo1080G1500 Vigna mungo HOM05D004171 ORTHO05D004983 7.0e-65 251.1 198 61.1
MBI18_g27681_MAGBIO Magnolia biondii HOM05D004171 ORTHO05D004983 1.6e-64 250.0 217 56.7
Carub.0008s1458 Capsella rubella HOM05D004171 ORTHO05D004983 5.9e-64 248.1 187 61.5
Sed0025378 Sechium edule HOM05D004171 ORTHO05D004983 5.9e-64 248.1 198 61.6
EL10Ac4g08047 Beta vulgaris HOM05D004171 ORTHO05D004983 2.9e-63 245.7 228 53.5
CDE02G1151 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 2.9e-63 245.7 198 57.1
ECA236G3492 Erigeron canadensis HOM05D004171 ORTHO05D004983 2.9e-63 245.7 199 62.3
BcaC09g50583 Brassica carinata HOM05D002586 ORTHO05D007009 5.0e-63 245.0 187 61.0
FAN21G0927 Fragaria x ananassa HOM05D004171 ORTHO05D004983 3.2e-62 242.3 197 59.9
Aa31LG5G10160 Aethionema arabicum HOM05D002586 ORTHO05D007009 4.7e-61 238.4 185 58.9
Gohir.A08G020900 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.3e-58 230.3 198 57.1
Gorai.004G029100 Gossypium raimondii HOM05D004171 ORTHO05D004983 1.3e-58 230.3 198 57.1
DCAR_008697 Daucus carota HOM05D004171 ORTHO05D004983 2.4e-57 226.1 199 55.8
Os07g0559400 Oryza sativa ssp. japonica HOM05D004171 ORTHO05D004983 5.3e-57 224.9 199 51.8
Zm00001eb324170 Zea mays HOM05D004171 ORTHO05D004983 6.5e-55 218.0 199 52.3
Aqoxy1G03898 Aquilegia oxysepala HOM05D004171 ORTHO05D004983 2.1e-53 213.0 189 51.3
CDE01G0586 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 5.7e-51 204.9 169 55.6
Mapoly0102s0009 Marchantia polymorpha HOM05D004171 ORTHO05D004983 7.5e-51 204.5 199 48.7
SEGI_27365 Sequoiadendron giganteum HOM05D004171 ORTHO05D004983 9.5e-46 187.6 157 53.5
Pp3c3_11900 Physcomitrium patens HOM05D004171 ORTHO05D004983 4.1e-41 172.2 199 42.7
SMO116G0055 Selaginella moellendorffii HOM05D004171 ORTHO05D004983 9.2e-41 171.0 198 40.4
AagrBONN_evm.TU.Sc2ySwM_228.913 Anthoceros agrestis HOM05D004171 ORTHO05D004983 8.3e-34 147.9 202 39.6
CBR_g24077 Chara braunii HOM05D004171 ORTHO05D004983 3.5e-32 142.5 200 37.0
Nn1g03875 Nelumbo nucifera HOM05D004171 ORTHO05D004983 5.0e-31 138.7 109 61.5
CDE12G0832 Ceratophyllum demersum HOM05D004171 ORTHO05D004983 3.1e-28 129.4 167 40.7
Oeu019367.1 Olea europaea HOM05D004171 ORTHO05D004983 5.2e-28 128.6 80 77.5
Nn1g06780 Nelumbo nucifera HOM05D004171 ORTHO05D004983 7.5e-27 124.8 80 72.5
Ca_22993_v3 Cicer arietinum L. HOM05D004171 ORTHO05D004983 2.8e-21 106.3 80 58.8
Gohir.D08G031500 Gossypium hirsutum HOM05D004171 ORTHO05D004983 1.8e-20 103.6 98 53.1
AL9U10820 Arabidopsis lyrata HOM05D004171 ORTHO05D004983 1.5e-14 84.0 73 54.8
C02p17300 Brassica napus HOM05D004171 ORTHO05D004983 1.9e-14 83.6 52 69.2
BolC2t07830H Brassica oleracea HOM05D004171 ORTHO05D004983 1.9e-14 83.6 52 69.2
BolC2t07836H Brassica oleracea HOM05D004171 ORTHO05D004983 1.9e-14 83.6 52 69.2
CBR_g54085 Chara braunii HOM05D000019 ORTHO05D000002 9.5e-14 81.3 79 45.6


User provided reference genes

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