Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 6.9e-40 166.8 80 100.0
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.5e-34 148.3 70 100.0
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.5e-34 148.3 70 100.0
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 1.8e-32 142.1 71 95.8
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 2.4e-32 141.7 70 97.1
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.4e-32 141.7 70 97.1
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.4e-32 141.7 70 97.1
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.4e-32 141.7 70 97.1
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 5.3e-32 140.6 70 94.3
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 6.9e-32 140.2 70 95.7
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 9.0e-32 139.8 70 94.3
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 2.0e-31 138.7 70 92.9
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.0e-31 138.7 70 92.9
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.6e-31 138.3 70 92.9
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 3.4e-31 137.9 70 94.3
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 3.4e-31 137.9 70 92.9
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 3.4e-31 137.9 70 92.9
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 5.9e-31 137.1 70 91.4
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.3e-30 136.0 70 91.4
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 1.3e-30 136.0 70 91.4
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 2.2e-30 135.2 70 90.0
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 2.2e-30 135.2 70 91.4
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 2.2e-30 135.2 70 91.4
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.2e-30 135.2 70 91.4
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 2.2e-30 135.2 70 91.4
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 5.0e-30 134.0 71 88.7
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 5.0e-30 134.0 71 88.7
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 5.0e-30 134.0 70 91.4
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 5.0e-30 134.0 70 90.0
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 5.0e-30 134.0 70 87.1
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 6.5e-30 133.7 73 86.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 6.5e-30 133.7 73 86.3
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 6.5e-30 133.7 73 86.3
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 6.5e-30 133.7 73 86.3
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 6.5e-30 133.7 70 90.0
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 6.5e-30 133.7 70 90.0
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.4e-29 132.5 70 88.6
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.4e-29 132.5 70 88.6
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.9e-29 132.1 70 90.0
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 1.9e-29 132.1 70 88.6
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 2.5e-29 131.7 70 88.6
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 3.2e-29 131.3 70 87.1
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 3.2e-29 131.3 70 88.6
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 4.2e-29 131.0 70 88.6
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 4.2e-29 131.0 70 90.0
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 5.5e-29 130.6 70 87.1
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 5.5e-29 130.6 70 87.1
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 5.5e-29 130.6 70 87.1
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 5.5e-29 130.6 70 87.1
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 5.5e-29 130.6 70 87.1
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 7.2e-29 130.2 70 87.1
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.2e-28 129.4 70 88.6
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 1.2e-28 129.4 70 88.6
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 2.1e-28 128.6 70 85.7
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 2.1e-28 128.6 70 85.7
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 2.1e-28 128.6 70 85.7
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 2.1e-28 128.6 68 88.2
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 2.1e-28 128.6 70 85.7
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.7e-28 128.3 70 85.7
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 2.7e-28 128.3 71 81.7
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 3.6e-28 127.9 70 85.7
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.6e-28 127.9 70 84.3
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 3.6e-28 127.9 70 85.7
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 4.6e-28 127.5 70 87.1
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 4.6e-28 127.5 70 84.3
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 4.6e-28 127.5 70 84.3
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 6.1e-28 127.1 70 84.3
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 6.1e-28 127.1 70 84.3
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 6.1e-28 127.1 70 84.3
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 7.9e-28 126.7 70 88.6
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 1.0e-27 126.3 70 84.3
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 1.0e-27 126.3 70 84.3
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 1.0e-27 126.3 70 82.9
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.0e-27 126.3 70 84.3
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.4e-27 125.9 70 82.9
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.4e-27 125.9 70 82.9
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.8e-27 125.6 70 80.0
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 1.8e-27 125.6 70 87.1
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 2.3e-27 125.2 70 84.3
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 5.1e-27 124.0 70 82.9
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 6.7e-27 123.6 70 80.0
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 1.1e-26 122.9 70 81.4
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 2.0e-26 122.1 70 80.0
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 2.0e-26 122.1 63 85.7
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 7.4e-26 120.2 70 80.0
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 2.2e-25 118.6 70 78.6
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 2.2e-25 118.6 89 68.5
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 4.8e-25 117.5 62 85.5
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 8.2e-25 116.7 101 61.4
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 1.5e-23 112.5 69 81.2
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 2.6e-23 111.7 70 70.0
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 4.5e-23 110.9 68 75.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 1.7e-22 109.0 70 71.4
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 2.9e-22 108.2 68 75.0
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 3.2e-21 104.8 49 98.0
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 2.7e-20 101.7 144 45.1
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 6.1e-20 100.5 70 64.3
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 2.0e-18 95.5 52 84.6
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 3.3e-18 94.7 55 80.0
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 7.4e-18 93.6 62 75.8
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 7.4e-18 93.6 47 91.5
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 1.1e-16 89.7 48 89.6
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 1.4e-16 89.4 61 72.1
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 5.3e-16 87.4 44 84.1
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 2.0e-15 85.5 53 73.6
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 7.7e-15 83.6 62 64.5
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 1.7e-14 82.4 48 77.1
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 1.1e-13 79.7 77 51.9
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 3.2e-13 78.2 48 75.0
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 5.5e-13 77.4 70 51.4
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 9.4e-13 76.6 38 84.2
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 1.2e-12 76.3 69 58.0
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 3.6e-12 74.7 72 47.2
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 3.6e-12 74.7 49 71.4
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 8.0e-12 73.6 37 91.9
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.4e-11 72.8 52 67.3
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.4e-11 72.8 34 97.1
ClCG08G010140 Citrullus lanatus HOM05D005946 ORTHO05D007340 4.0e-11 71.2 37 86.5
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 4.0e-11 71.2 47 72.3
Peaxi162Scf00207g00238 Petunia axillaris HOM05D005946 ORTHO05D007340 1.1e-10 69.7 36 91.7
Sabra10G0047000 Salix brachista HOM05D005946 ORTHO05D007340 2.0e-10 68.9 42 78.6
Psat5g094720 Pisum sativum HOM05D005946 ORTHO05D007340 7.5e-10 67.0 46 69.6
arahy.Tifrunner.gnm1.ann1.K0QS2G Arachis hypogaea HOM05D005946 ORTHO05D007340 3.7e-09 64.7 42 73.8
FAN04G2943 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.3e-09 63.9 37 81.1
FAN08G3074 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.3e-09 63.9 37 81.1
FAN18G3129 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.3e-09 63.9 37 81.1
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 1.1e-08 63.2 36 83.3
Nitab4.5_0000976g0200 Nicotiana tabacum HOM05D005946 ORTHO05D007340 1.2e-07 59.7 27 96.3


User provided reference genes

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